ClCG05G014110 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G014110
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTransport membrane protein
LocationCG_Chr05: 22610183 .. 22612219 (-)
RNA-Seq ExpressionClCG05G014110
SyntenyClCG05G014110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCATTTGCTAGAACTAAGGGGTCTTTCTATGGTAACCTTCATGAACAATCATTGTTTTTTTTTTATGGTTTTTCCACTTTTCACAGCAACTCTTGCCACACCTCCGGATATTTAGTGCCAAATCATCGCCCATTTCCTTATTTCTTTGATAATCGAGTTGGCTATCTTTGTGGCATTGATTCTACAAGTTCGTGAAGAGGGTTGGACAAGTGGAATGAGGGAAAGCGACTTGATCGACAAAAAAGAAGAGGGGAACCCCCAGAAATTCTCAACCAACATTTGGATTCATTCCCGTAAAGATTCTAACAAACAGAGGACTCCTTACCTTAGGAGTGGGATAAATGATACATCCCCGGCAAGCGCCGATGAAGAACGCAAGCAAAGCTGGAGCTCGGGCATTGTTATATTCCATACAGAGAAAGAAGGCACACTGGTAAGAAGGTCGGGGGAGCGAACTGAAAAGCTCAGCTTTGTGGAACAGACCAATCTTCCATACCGCCCCCTTACAACTCTATAAAAAAGCCTGTGGGAAGTGCGAAAAGCTAAGCCACTAATGTCGTGGCAAAGGTTATACCTCAGAAAATCAGCGAAGCTAAAGTTTCGTATTTGTTTGTTATATCTTTAGATCGAGCAACAACTTCTAAGGAAAGCCTGCATTCCCCTTTGAAAGAAGTAAAAAAAAGGGAGCGATAGGGAGGAGAGAAAAGGTTGCGAAAGTGCTTCTAGATCTCATGGAATAAGGAAGAATTTGGAACTCAACTTTCTTGCTTTCATAGAAAAAATGAATTGTGGAGATGAAATCCTGATTACATTACCGTAGGCCAAAATTGGATTTAGAAGAGCAAGCCAAAAAAAGTACACCTACCATATAGTCCCTCTTTAATGTATATATCATTTTATACAGCGATAGATAGTTTGACAAAGGGCACCGGTTCGAAATAGTGTTAGCCATAATCTACCTTTCCCTTATTAGATTCGAATTCGGCTTAGTAATCCCCTTCCTCACGGAAGGAGTAGGAGTCAAGAGTCAAGTCAAGAGTAGCCGTCAACAAAGAGTGAGTAGAGCAGATAGCAAAGAGGGAAAGAAAGCACGGGCGAAGAAAGCCTATTCTATTATAGTAGTCCTCCGGAAAGGGCATATCGGGGAAGAAAGCCCATTAGAATCCAGAGATCTTATGCAAGCTCTTATTCTCCCAGGTAGAAGGGAGGAGGACGAAAAGGGCCACAGCTGCATTAGCAGTTCGCCTAGAATAAAGGTCAAGGAAGTTAACTCTCAGGGCGAATAAGGTCATCATTAAAGCAATTAATTGCGTATTTCCCATCTAGAAATCTATCTTTGTTTATATCTTCAATCATGAAAATTCTTCTCATTAGATGCTAAGGGTTAATATACTAATAAAAGGGCTTGATCCCACACCACACTCCCTAAAATGCTAAGTTTCCAAGGGTTTTACTATCTCTCAAGTCTAGGCCTACTAATGGTGTACCGCCCCAAGCTTTAGTGCTGGACTGCCTACAAAGGGAAAATGGAATTTGGCTGTAAAGCTCTTTCCAATCTTGTCCGGGTAGACCGACAAAAATAAAGGAAAGGGTGACCCTGCTAAAGGACCATCCCATAAAGCTCTAAATGGTAATGGTCAAACCGATCAAATTCAATTTGCTTGCAAGCTCTGGATTACTGAGCCTTGATTCGCCTCTCTTGCTTGCCCTACTGTGTCACTGGTTTAATAAAAGAAACTCTCTGCTCAAGTTAACTCCCTGATTTGCTATTCTATTATCTCAAAGTCTCGTCGGGGTAGACAGGTTTCGCCCCCTAGTAATATAATTCAATCTTTAGGAGCATCAGGGACAACGAGAAGATTCTCAAATGGATAACTCGCATATAAAAGAAAGGATGCTTTGCTTGCCATTGAAGGCGATTCCTAAATTTAGCGAGAAAGCAGACAACGAAAAGAAAGGTAGCGCAGCCGGCGCGAAAAAAGAAAAGCGAGCTGGGAATTCGGCATCATATCGATTAGCTAAGCCAGCCTGA

mRNA sequence

ATGATCCATTTGCTAGAACTAAGGGGTCTTTCTATGTGCCAAATCATCGCCCATTTCCTTATTTCTTTGATAATCGAGTTGGCTATCTTTGTGGCATTGATTCTACAAGTTCGTGAAGAGGGTTGGACAAGTGGAATGAGGGAAAGCGACTTGATCGACAAAAAAGAAGAGGGGAACCCCCAGAAATTCTCAACCAACATTTGGATTCATTCCCGTAAAGATTCTAACAAACAGAGGACTCCTTACCTTAGGAGTGGGATAAATGATACATCCCCGGCAAGCGCCGATGAAGAACGCAAGCAAAGCTGGAGCTCGGGCATTGTTATATTCCATACAGAGAAAGAAGGCACACTGCTTTGTGGAACAGACCAATCTTCCATACCGCCCCCTTACAACTCTATAAAAAAGCCTGTGGGAAGGCACCGGTTCGAAATAGTGTTAGCCATAATCTACCTTTCCCTTATTAGATTCGAATTCGGCTTAGTAATCCCCTTCCTCACGGAAGGAGTAGGAGTCAAGAGTCAAGTCAAGAGTAGCCGTCAACAAAGAGTGAGTAGAGCAGATAGCAAAGAGGGAAAGAAAGCACGGGCGAAGAAAGCCTATTCTATTATAGTAGTCCTCCGGAAAGGGCATATCGGGGAAGAAAGCCCATTAGAATCCAGAGATCTTATGCAAGCTCTTATTCTCCCAGGTAGAAGGGAGGAGGACGAAAAGGGCCACAGCTGCATTAGCAGTTCGCCTAGAATAAAGACCGACAAAAATAAAGGAAAGGGTGACCCTGCTAAAGGACCATCCCATAAAGCTCTAAATGAAGATTCTCAAATGGATAACTCGCATATAAAAGAAAGGATGCTTTGCTTGCCATTGAAGGCGATTCCTAAATTTAGCGAGAAAGCAGACAACGAAAAGAAAGGTAGCGCAGCCGGCGCGAAAAAAGAAAAGCGAGCTGGGAATTCGGCATCATATCGATTAGCTAAGCCAGCCTGA

Coding sequence (CDS)

ATGATCCATTTGCTAGAACTAAGGGGTCTTTCTATGTGCCAAATCATCGCCCATTTCCTTATTTCTTTGATAATCGAGTTGGCTATCTTTGTGGCATTGATTCTACAAGTTCGTGAAGAGGGTTGGACAAGTGGAATGAGGGAAAGCGACTTGATCGACAAAAAAGAAGAGGGGAACCCCCAGAAATTCTCAACCAACATTTGGATTCATTCCCGTAAAGATTCTAACAAACAGAGGACTCCTTACCTTAGGAGTGGGATAAATGATACATCCCCGGCAAGCGCCGATGAAGAACGCAAGCAAAGCTGGAGCTCGGGCATTGTTATATTCCATACAGAGAAAGAAGGCACACTGCTTTGTGGAACAGACCAATCTTCCATACCGCCCCCTTACAACTCTATAAAAAAGCCTGTGGGAAGGCACCGGTTCGAAATAGTGTTAGCCATAATCTACCTTTCCCTTATTAGATTCGAATTCGGCTTAGTAATCCCCTTCCTCACGGAAGGAGTAGGAGTCAAGAGTCAAGTCAAGAGTAGCCGTCAACAAAGAGTGAGTAGAGCAGATAGCAAAGAGGGAAAGAAAGCACGGGCGAAGAAAGCCTATTCTATTATAGTAGTCCTCCGGAAAGGGCATATCGGGGAAGAAAGCCCATTAGAATCCAGAGATCTTATGCAAGCTCTTATTCTCCCAGGTAGAAGGGAGGAGGACGAAAAGGGCCACAGCTGCATTAGCAGTTCGCCTAGAATAAAGACCGACAAAAATAAAGGAAAGGGTGACCCTGCTAAAGGACCATCCCATAAAGCTCTAAATGAAGATTCTCAAATGGATAACTCGCATATAAAAGAAAGGATGCTTTGCTTGCCATTGAAGGCGATTCCTAAATTTAGCGAGAAAGCAGACAACGAAAAGAAAGGTAGCGCAGCCGGCGCGAAAAAAGAAAAGCGAGCTGGGAATTCGGCATCATATCGATTAGCTAAGCCAGCCTGA

Protein sequence

MIHLLELRGLSMCQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEGNPQKFSTNIWIHSRKDSNKQRTPYLRSGINDTSPASADEERKQSWSSGIVIFHTEKEGTLLCGTDQSSIPPPYNSIKKPVGRHRFEIVLAIIYLSLIRFEFGLVIPFLTEGVGVKSQVKSSRQQRVSRADSKEGKKARAKKAYSIIVVLRKGHIGEESPLESRDLMQALILPGRREEDEKGHSCISSSPRIKTDKNKGKGDPAKGPSHKALNEDSQMDNSHIKERMLCLPLKAIPKFSEKADNEKKGSAAGAKKEKRAGNSASYRLAKPA
Homology
BLAST of ClCG05G014110 vs. NCBI nr
Match: YP_005090428.1 (orf1 gene product [Dorcoceras hygrometricum] >AEK53322.1 hypothetical protein [Dorcoceras hygrometricum])

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-16
Identity = 61/97 (62.89%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKK------EEG------NP 72
           CQI+A FLISLIIELAIFVA I+QVREEGWTSGMRES  IDKK      E G      N 
Sbjct: 233 CQIVARFLISLIIELAIFVASIVQVREEGWTSGMRESGSIDKKRRVAPLEPGKVIININI 292

Query: 73  QKFSTNIW----IHSRKDSNKQRTPYLRSGINDTSPA 94
            +F +N      IHSRKD N Q+TPYLRSG++DTS A
Sbjct: 293 NEFQSNSQPTDVIHSRKDYNTQKTPYLRSGMSDTSGA 329

BLAST of ClCG05G014110 vs. NCBI nr
Match: KAF3452197.1 (hypothetical protein FNV43_RR08295 [Rhamnella rubrinervis])

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-16
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEGNP---------QKF 72
           CQI+A FLIS IIELAIFVA I+QVREEGWTSGMRES  I+KKE+ +P         ++F
Sbjct: 188 CQIVALFLISSIIELAIFVASIVQVREEGWTSGMRESGSINKKEKSSPTLEPGKVTIKEF 247

Query: 73  STN----IWIHSRKDSNKQRTPYLRSGINDTS 92
            +N      IHSRKD N Q+TPYLRSG++DTS
Sbjct: 248 PSNSQPTYAIHSRKDYNTQKTPYLRSGMSDTS 279

BLAST of ClCG05G014110 vs. NCBI nr
Match: KAF3452142.1 (hypothetical protein FNV43_RR08240 [Rhamnella rubrinervis])

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-16
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEGNP---------QKF 72
           CQI+A FLIS IIELAIFVA I+QVREEGWTSGMRES  I+KKE+ +P         ++F
Sbjct: 754 CQIVALFLISSIIELAIFVASIVQVREEGWTSGMRESGSINKKEKSSPTLEPGKVTIKEF 813

Query: 73  STN----IWIHSRKDSNKQRTPYLRSGINDTS 92
            +N      IHSRKD N Q+TPYLRSG++DTS
Sbjct: 814 PSNSQPTYAIHSRKDYNTQKTPYLRSGMSDTS 845

BLAST of ClCG05G014110 vs. NCBI nr
Match: QKE23886.1 (SecY-independent membrane transporter protein [Scutellaria amoena])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-15
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEG-----NPQKFSTNI 72
           CQI+A FLIS IIELAIFVA I+QVREEGWTSGMRES  IDKK+E       P K   N 
Sbjct: 233 CQIVARFLISFIIELAIFVASIVQVREEGWTSGMRESGSIDKKKEKKSSPLEPGKVIINE 292

Query: 73  W---------IHSRKDSNKQRTPYLRSGINDTSPA 94
           +         IHSRKD N Q+TPYLR G++DTS A
Sbjct: 293 FQSNSQPTYAIHSRKDYNTQKTPYLRIGMSDTSGA 327

BLAST of ClCG05G014110 vs. NCBI nr
Match: QTI91123.1 (transport membrane protein [Scutellaria tsinyunensis])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-15
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEG-----NPQKFSTNI 72
           CQI+A FLIS IIELAIFVA I+QVREEGWTSGMRES  IDKK+E       P K   N 
Sbjct: 223 CQIVARFLISFIIELAIFVASIVQVREEGWTSGMRESGSIDKKKEKKSSPLEPGKVIINE 282

Query: 73  W---------IHSRKDSNKQRTPYLRSGINDTSPA 94
           +         IHSRKD N Q+TPYLR G++DTS A
Sbjct: 283 FQSNSQPTYAIHSRKDYNTQKTPYLRIGMSDTSGA 317

BLAST of ClCG05G014110 vs. ExPASy Swiss-Prot
Match: P93312 (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-12
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEGNP 61
           CQI+A FLISLIIELAIFVALI+QVREEGWTSGMRES  I+KK + +P
Sbjct: 223 CQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGSIEKKNKSSP 270

BLAST of ClCG05G014110 vs. ExPASy TrEMBL
Match: G9FCN9 (Uncharacterized protein orf1 OS=Dorcoceras hygrometricum OX=472368 GN=orf1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-16
Identity = 61/97 (62.89%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKK------EEG------NP 72
           CQI+A FLISLIIELAIFVA I+QVREEGWTSGMRES  IDKK      E G      N 
Sbjct: 233 CQIVARFLISLIIELAIFVASIVQVREEGWTSGMRESGSIDKKRRVAPLEPGKVIININI 292

Query: 73  QKFSTNIW----IHSRKDSNKQRTPYLRSGINDTSPA 94
            +F +N      IHSRKD N Q+TPYLRSG++DTS A
Sbjct: 293 NEFQSNSQPTDVIHSRKDYNTQKTPYLRSGMSDTSGA 329

BLAST of ClCG05G014110 vs. ExPASy TrEMBL
Match: A0A6M8E2W9 (SecY-independent membrane transporter protein OS=Scutellaria amoena OX=1052904 GN=mttB PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-16
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEG-----NPQKFSTNI 72
           CQI+A FLIS IIELAIFVA I+QVREEGWTSGMRES  IDKK+E       P K   N 
Sbjct: 233 CQIVARFLISFIIELAIFVASIVQVREEGWTSGMRESGSIDKKKEKKSSPLEPGKVIINE 292

Query: 73  W---------IHSRKDSNKQRTPYLRSGINDTSPA 94
           +         IHSRKD N Q+TPYLR G++DTS A
Sbjct: 293 FQSNSQPTYAIHSRKDYNTQKTPYLRIGMSDTSGA 327

BLAST of ClCG05G014110 vs. ExPASy TrEMBL
Match: A0A2R4LW69 (Transport membrane protein (Fragment) OS=Citrus sinensis OX=2711 GN=mttB PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-14
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEG----NPQKFSTNIW 72
           CQI+A FLI LIIELAIFVA I+QV EEGWTSGMRES  I+KK+       P K + N +
Sbjct: 231 CQIVARFLIYLIIELAIFVASIVQVLEEGWTSGMRESGSIEKKKRRVAPLEPGKLTINEF 290

Query: 73  ---------IHSRKDSNKQRTPYLRSGINDTS 92
                    IHSRKD N ++TPYLRSGI+DTS
Sbjct: 291 PSNSQPTYAIHSRKDYNTEKTPYLRSGISDTS 322

BLAST of ClCG05G014110 vs. ExPASy TrEMBL
Match: D5I3C8 (Transport membrane protein OS=Citrullus lanatus OX=3654 GN=mttB PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-12
Identity = 52/87 (59.77%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   MIHLLELRGLSM---------------------------CQIIAHFLISLIIELAIFVAL 60
           +I LLELRGLS+                           CQI+A FLISLIIELAIFVAL
Sbjct: 196 VIRLLELRGLSVETFTNNRRFLMVFSLFIAALSTPPDIWCQIVACFLISLIIELAIFVAL 255

BLAST of ClCG05G014110 vs. ExPASy TrEMBL
Match: A0A699JM43 (Transport membrane protein, mitochondrial OS=Tanacetum cinerariifolium OX=118510 GN=Tci_617495 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-12
Identity = 53/86 (61.63%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 19  FLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEG--NPQK-------FSTN--- 78
           FLI  IIELAI VA I+QVREEGWTSGMRES  IDKK      P K       F +N   
Sbjct: 116 FLIFSIIELAISVASIVQVREEGWTSGMRESGSIDKKNSSLLEPSKVIIIINEFPSNSQQ 175

Query: 79  -IWIHSRKDSNKQRTPYLRSGINDTS 92
              IHSRKDSN Q+TPYLRSG++DTS
Sbjct: 176 TYAIHSRKDSNTQKTPYLRSGMSDTS 201

BLAST of ClCG05G014110 vs. TAIR 10
Match: ATMG00570.1 (Sec-independent periplasmic protein translocase )

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 13  CQIIAHFLISLIIELAIFVALILQVREEGWTSGMRESDLIDKKEEGNP 61
           CQI+A FLISLIIELAIFVA I+QVREEGWTSGMRES  I+KK + +P
Sbjct: 229 CQIVARFLISLIIELAIFVASIVQVREEGWTSGMRESGSIEKKNKSSP 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_005090428.14.0e-1662.89orf1 gene product [Dorcoceras hygrometricum] >AEK53322.1 hypothetical protein [D... [more]
KAF3452197.15.3e-1661.96hypothetical protein FNV43_RR08295 [Rhamnella rubrinervis][more]
KAF3452142.15.3e-1661.96hypothetical protein FNV43_RR08240 [Rhamnella rubrinervis][more]
QKE23886.12.0e-1561.05SecY-independent membrane transporter protein [Scutellaria amoena][more]
QTI91123.12.0e-1561.05transport membrane protein [Scutellaria tsinyunensis][more]
Match NameE-valueIdentityDescription
P933128.2e-1279.17Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16... [more]
Match NameE-valueIdentityDescription
G9FCN92.0e-1662.89Uncharacterized protein orf1 OS=Dorcoceras hygrometricum OX=472368 GN=orf1 PE=3 ... [more]
A0A6M8E2W99.7e-1661.05SecY-independent membrane transporter protein OS=Scutellaria amoena OX=1052904 G... [more]
A0A2R4LW691.1e-1459.78Transport membrane protein (Fragment) OS=Citrus sinensis OX=2711 GN=mttB PE=3 SV... [more]
D5I3C86.5e-1259.77Transport membrane protein OS=Citrullus lanatus OX=3654 GN=mttB PE=3 SV=1[more]
A0A699JM436.5e-1261.63Transport membrane protein, mitochondrial OS=Tanacetum cinerariifolium OX=118510... [more]
Match NameE-valueIdentityDescription
ATMG00570.11.3e-1277.08Sec-independent periplasmic protein translocase [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..282

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G014110.1ClCG05G014110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065002 intracellular protein transmembrane transport
biological_process GO:0043953 protein transport by the Tat complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0033281 TAT protein transport complex
molecular_function GO:0009977 proton motive force dependent protein transmembrane transporter activity