ClCG05G013680 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G013680
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSerine/threonine-protein kinase VRK1-like
LocationCG_Chr05: 20043341 .. 20044244 (+)
RNA-Seq ExpressionClCG05G013680
SyntenyClCG05G013680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTACATTTTGGAGAGGAGTATAGCTGCAACAAGCTTTTAGTGATGAAGCAAAGTTGCACCAGCATTTTGGAAAGGAGCGAAGTTGCCTCAATAATTAAGAAGAATAGCGAGGCTACACCAACATTTCGAAGAAGATATGAAATCGTATCGACATTTTAGAGTGGAGGCAGAGCTGCACCATCATTTTGGAGATGGAGCGAATCTTTACCAGTATTTTGGAGATGGAGCAAAGTTGTACCAACATTTTAGGGATGAAGTAAAGCTACATCAGAATTTTGGAGATGGAGCAAAGCGCACCAACATTTTGGAGATGGCGTGAAGCTCTACTAACATTTTGGAAATGGAACGAAGCTGAACCAGCATTTTAGAGATGGAACGGAGCTGCATCAACATTTTTGGAGATGAAGCGAAGTTGCACCAATATTTTATAGATGGAGCGAAGTTGCACCAATATTTTAGAGATGGAGCGAAGTTGCACCAACATTTTAGGGATAGAGCGAAACCGCACCAACATTGTGTTGATGGCGTGAAGTTGCACTAGCATTTTAGTTGAACAAAGTTGCACCAACAGTTTAAAGATGAAACGAAGCAGCACCAACATTTTTGAGATGACGTGAGGCTGCACCAACATTTTGAAGATGGAGTGAAGTTGCACGAGCATTCTGGAGATGGAGTGAAACCACACCAACATTTTGGAGATGGTGTGAAATTACACCGACATTTTGTAGATGAAGCGAAACCACACCAACATTTTGGAAGAGGAGCGAAGCTACACGAAAATTTTGAAGATGAAGCAAAACCATACCAACATTTTGCAGAGAAGGAGGAGCTGCACCAACATTTTGGAGAAGGAGTAAAACTGCACCAACATTTTGGAAGAGAAGCGAAGCTGCACTAA

mRNA sequence

ATGCACCTACATTTTGGAGAGGAGTATAGCTGCAACAAGCTTTTAGTGATGAAGCAAAGTTGCACCAGCATTTTGGAAAGGAGCGAAGCAGAGCTGCACCATCATTTTGGAGATGGAGCGAATCTTTACCAGTATTTTGGAGATGGAGCAAAGTTGTACCAACATTTTAGGGATGAAGTAAAGCTACATCAGAATTTTGGAGATGGAGCAAAGCGCACCAACATTTTGGAGATGGCCATTTTAGAGATGGAACGGAGCTGCATCAACATTTTTGGAGATGAAGCGAAGTTGCACCAATATTTTATAGATGGAGCGAAGTTGCACCAATATTTTAGAGATGGAGCGAAGTTGCACCAACATTTTAGGGATAGAGCGAAACCGCACCAACATTGTGTTGATGGCGTGAAGCTGCACCAACATTTTGAAGATGGAGTGAAGTTGCACGAGCATTCTGGAGATGGAGTGAAACCACACCAACATTTTGGAGATGGTGTGAAATTACACCGACATTTTGTAGATGAAGCGAAACCACACCAACATTTTGGAAGAGGAGCGAAGCTACACGAAAATTTTGAAGATGAAGCAAAACCATACCAACATTTTGCAGAGAAGGAGGAGCTGCACCAACATTTTGGAGAAGGAGTAAAACTGCACCAACATTTTGGAAGAGAAGCGAAGCTGCACTAA

Coding sequence (CDS)

ATGCACCTACATTTTGGAGAGGAGTATAGCTGCAACAAGCTTTTAGTGATGAAGCAAAGTTGCACCAGCATTTTGGAAAGGAGCGAAGCAGAGCTGCACCATCATTTTGGAGATGGAGCGAATCTTTACCAGTATTTTGGAGATGGAGCAAAGTTGTACCAACATTTTAGGGATGAAGTAAAGCTACATCAGAATTTTGGAGATGGAGCAAAGCGCACCAACATTTTGGAGATGGCCATTTTAGAGATGGAACGGAGCTGCATCAACATTTTTGGAGATGAAGCGAAGTTGCACCAATATTTTATAGATGGAGCGAAGTTGCACCAATATTTTAGAGATGGAGCGAAGTTGCACCAACATTTTAGGGATAGAGCGAAACCGCACCAACATTGTGTTGATGGCGTGAAGCTGCACCAACATTTTGAAGATGGAGTGAAGTTGCACGAGCATTCTGGAGATGGAGTGAAACCACACCAACATTTTGGAGATGGTGTGAAATTACACCGACATTTTGTAGATGAAGCGAAACCACACCAACATTTTGGAAGAGGAGCGAAGCTACACGAAAATTTTGAAGATGAAGCAAAACCATACCAACATTTTGCAGAGAAGGAGGAGCTGCACCAACATTTTGGAGAAGGAGTAAAACTGCACCAACATTTTGGAAGAGAAGCGAAGCTGCACTAA

Protein sequence

MHLHFGEEYSCNKLLVMKQSCTSILERSEAELHHHFGDGANLYQYFGDGAKLYQHFRDEVKLHQNFGDGAKRTNILEMAILEMERSCINIFGDEAKLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGVKPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQHFGEGVKLHQHFGREAKLH
Homology
BLAST of ClCG05G013680 vs. NCBI nr
Match: XP_038887242.1 (LWamide neuropeptides-like [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 7.9e-27
Identity = 76/158 (48.10%), Postives = 89/158 (56.33%), Query Frame = 0

Query: 41  NLYQYFGDGAKLYQHFRDEVKLHQNFGDGAKRTNILEMAILEMERSCINIFGDEAKLHQY 100
           N  QYFGD AK +Q+ RDEVK HQ  G+ AK                   FGDEAKLHQY
Sbjct: 26  NWRQYFGDEAKPHQYLRDEVKPHQYLGEKAKPH---------------QYFGDEAKLHQY 85

Query: 101 FIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGVKPHQH 160
             D AK HQY  D  KLHQ+  D  K HQ+  D  K HQ+  D  K H++ GD  KPHQ+
Sbjct: 86  LEDKAKPHQYLGDEVKLHQYLGDETKSHQYLGDEAKPHQYLGDEAKPHQYLGDEEKPHQY 145

Query: 161 FGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPY 199
            GD  K  ++  DEAKPHQ+ G   K H+   DEAKPY
Sbjct: 146 LGDEAKSFQYLGDEAKPHQYLGDEVKPHQYLGDEAKPY 168

BLAST of ClCG05G013680 vs. NCBI nr
Match: XP_029376745.1 (serine/threonine-protein kinase VRK1-like isoform X1 [Echeneis naucrates])

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-11
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 0

Query: 98  HQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGVKP 157
           HQ + D  + HQ + D  + HQ + D  +PHQ   D  + HQ + D  + H+  GD  + 
Sbjct: 444 HQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRL 503

Query: 158 HQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQHFGEGVKL 217
           HQ +GD  +LH+ + D  +PHQ +G    LH+++ D  +P+Q + +    HQ +G+  + 
Sbjct: 504 HQDYGDSHRLHQDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGDSHRP 563

Query: 218 HQHFGREA 226
           HQ + R A
Sbjct: 564 HQDWDRSA 571

BLAST of ClCG05G013680 vs. NCBI nr
Match: XP_029376746.1 (serine/threonine-protein kinase VRK1-like isoform X2 [Echeneis naucrates])

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-10
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 0

Query: 108 HQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGVKPHQHFGDGVKL 167
           HQ + D  + HQ + D  +PHQ   D  + HQ + D  + H+  GD  + HQ +GD  +L
Sbjct: 444 HQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRLHQDYGDSHRL 503

Query: 168 HRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQHFGEGVKLHQHFGREA 226
           H+ + D  +PHQ +G    LH+++ D  +P+Q + +    HQ +G+  + HQ + R A
Sbjct: 504 HQDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDWDRSA 561

BLAST of ClCG05G013680 vs. NCBI nr
Match: XP_037169853.1 (uncharacterized protein HO173_001265 [Letharia columbiana] >KAF6240594.1 hypothetical protein HO173_001265 [Letharia columbiana])

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-08
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 0

Query: 96  KLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGV 155
           K H++     K H++  +G K HQH   R+K H+H  +  K H+H E   K HEH  +G 
Sbjct: 111 KEHRHKEHRPKEHEHEDNGPKEHQHKEHRSKEHEHEENRHKEHRHKEHRPKEHEHEDNGP 170

Query: 156 KPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQHFGEGV 215
           K HQH     K H+H  +  K H+H     K HE+ E+  K ++H   + + H+H   G 
Sbjct: 171 KEHQHKEHRSKEHKHEENRHKEHRHKEHRPKEHEHEENRHKEHRHKEHRPKEHEHEENGP 230

Query: 216 KLHQH--FGREAKLH 229
           K H+H   GR+ + H
Sbjct: 231 KEHRHKEHGRDEQGH 245

BLAST of ClCG05G013680 vs. NCBI nr
Match: KYQ53236.1 (Protein SON [Trachymyrmex zeteki])

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-05
Identity = 48/131 (36.64%), Postives = 55/131 (41.98%), Query Frame = 0

Query: 91  FGDEAKLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEH 150
           F D   L  YF+D   L  YF D   L  HF D      H +DG  L  HF +G  L  H
Sbjct: 106 FLDGEHLDIYFLDSEHLDTYFLDRKHLDDHFLDCKHLDTHFLDGEHLDTHFFNGEHLDIH 165

Query: 151 SGDGVKPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQH 210
             D      HF DG  L  HF+D      HF  G  L  +F D      HF + E L  H
Sbjct: 166 FLDSEHLDTHFLDGEHLDTHFLDGEHLDDHFLDGEHLDTHFFDGEHLDIHFLDSEHLDTH 225

Query: 211 FGEGVKLHQHF 222
           F +G  L  HF
Sbjct: 226 FLDGENLDIHF 236

BLAST of ClCG05G013680 vs. ExPASy TrEMBL
Match: A0A665TGK9 (Serine/threonine-protein kinase VRK1-like OS=Echeneis naucrates OX=173247 GN=LOC115055234 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 0

Query: 98  HQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEHSGDGVKP 157
           HQ + D  + HQ + D  + HQ + D  +PHQ   D  + HQ + D  + H+  GD  + 
Sbjct: 444 HQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRL 503

Query: 158 HQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQHFGEGVKL 217
           HQ +GD  +LH+ + D  +PHQ +G    LH+++ D  +P+Q + +    HQ +G+  + 
Sbjct: 504 HQDYGDSHRLHQDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGDSHRP 563

Query: 218 HQHFGREA 226
           HQ + R A
Sbjct: 564 HQDWDRSA 571

BLAST of ClCG05G013680 vs. ExPASy TrEMBL
Match: A0A0F8B3F7 (Uncharacterized protein OS=Larimichthys crocea OX=215358 GN=EH28_02027 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 46/211 (21.80%), Postives = 88/211 (41.71%), Query Frame = 0

Query: 23  SILERSEAELHHHFGDGANLYQYFGDGAKLYQHFRDEVKLHQNFGDGA-KRTNILEMAIL 82
           +I    E   +H    G  +Y      + L+ H+     LH ++   +    +  + +IL
Sbjct: 336 TIGNHQEPTQNHREPSGTYIYIVIIQASILHPHYSQASILHPHYSQASILHPHYSQASIL 395

Query: 83  EMERSCINI----FGDEAKLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKL 142
               S  +I    +   + LH ++   + LH ++   + LH H+   +  H H      L
Sbjct: 396 HPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASIL 455

Query: 143 HQHFEDGVKLHEHSGDGVKPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKP 202
           H H+     LH H       H H+     LH H+   +  H H+ + + LH ++   +  
Sbjct: 456 HPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASILHPHYSQASIL 515

Query: 203 YQHFAEKEELHQHFGEGVKLHQHFGREAKLH 229
           + H+++   LH H+ +   LH H+ + + LH
Sbjct: 516 HPHYSQASILHPHYSQASILHPHYSQASILH 546

BLAST of ClCG05G013680 vs. ExPASy TrEMBL
Match: A0A3P9LJU9 (Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 40/131 (30.53%), Postives = 61/131 (46.56%), Query Frame = 0

Query: 91   FGDEAKLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEH 150
            F  E + HQ F    + HQ F    + HQ F    +PHQ     ++ HQ F   ++ H+ 
Sbjct: 912  FTPELRPHQRFTAELRPHQRFTPELRPHQKFTAELRPHQRFTPELRPHQRFTPELRPHQR 971

Query: 151  SGDGVKPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQH 210
                ++PHQ F   ++    F  E +PHQ F    + H+ F  E +P+Q F  +   HQ 
Sbjct: 972  FTPELRPHQRFTPELRPQPSFRAELRPHQRFTPELRPHQRFTAELRPHQRFTPELRPHQR 1031

Query: 211  FGEGVKLHQHF 222
            F   ++ HQ F
Sbjct: 1032 FTPELRPHQRF 1042

BLAST of ClCG05G013680 vs. ExPASy TrEMBL
Match: A0A151WZM8 (Protein SON OS=Trachymyrmex zeteki OX=64791 GN=ALC60_07630 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 48/131 (36.64%), Postives = 55/131 (41.98%), Query Frame = 0

Query: 91  FGDEAKLHQYFIDGAKLHQYFRDGAKLHQHFRDRAKPHQHCVDGVKLHQHFEDGVKLHEH 150
           F D   L  YF+D   L  YF D   L  HF D      H +DG  L  HF +G  L  H
Sbjct: 106 FLDGEHLDIYFLDSEHLDTYFLDRKHLDDHFLDCKHLDTHFLDGEHLDTHFFNGEHLDIH 165

Query: 151 SGDGVKPHQHFGDGVKLHRHFVDEAKPHQHFGRGAKLHENFEDEAKPYQHFAEKEELHQH 210
             D      HF DG  L  HF+D      HF  G  L  +F D      HF + E L  H
Sbjct: 166 FLDSEHLDTHFLDGEHLDTHFLDGEHLDDHFLDGEHLDTHFFDGEHLDIHFLDSEHLDTH 225

Query: 211 FGEGVKLHQHF 222
           F +G  L  HF
Sbjct: 226 FLDGENLDIHF 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887242.17.9e-2748.10LWamide neuropeptides-like [Benincasa hispida][more]
XP_029376745.13.6e-1132.81serine/threonine-protein kinase VRK1-like isoform X1 [Echeneis naucrates][more]
XP_029376746.18.8e-1033.05serine/threonine-protein kinase VRK1-like isoform X2 [Echeneis naucrates][more]
XP_037169853.18.2e-0834.81uncharacterized protein HO173_001265 [Letharia columbiana] >KAF6240594.1 hypothe... [more]
KYQ53236.16.5e-0536.64Protein SON [Trachymyrmex zeteki][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A665TGK91.7e-1132.81Serine/threonine-protein kinase VRK1-like OS=Echeneis naucrates OX=173247 GN=LOC... [more]
A0A0F8B3F72.0e-0721.80Uncharacterized protein OS=Larimichthys crocea OX=215358 GN=EH28_02027 PE=4 SV=1[more]
A0A3P9LJU92.8e-0630.53Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1[more]
A0A151WZM83.1e-0536.64Protein SON OS=Trachymyrmex zeteki OX=64791 GN=ALC60_07630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G013680.1ClCG05G013680.1mRNA