ClCG05G013230 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G013230
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotran_gag_3 domain-containing protein
Location	CG_Chr05: 18663306 .. 18663897 (-)
RNA-Seq Expression	ClCG05G013230
Synteny	ClCG05G013230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAACATCAACAACGATCCTCAACCCCTTCCCGAAACTTCCATTCCTAATCCTTCTCCCATGAAATCAACCACCGAGTCTACCTATGTGAAGAAGAACCCTGATGCATATGAGGTTAGATCTGGAACTTGTCCAGTCGGCACTCCTGCTTCCATAAACTTGTTGATCAAGTGACTTCCATCAAAATGGATCTCAACAACTTCTTGCTGTGGCAAAATATTGCTCTCCCAATCCTTGGAGCTACAAATTTGAAGTACACCTCACTGGTAAGGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTCAGAAGATGAACCACAAGGTTTATTACTTCTGTATCCTGAATATAATATTTGGATAGCTGCTGATCAGCTTCTCATTGGGTGGTTATATAACTTGATGACAATAGAAGTAACTTATCAAGTCAATGGGCATGATACAACAAATGGACTATGGGAGGCACTGCAAGAGTTTTATAGGCTTCAAGCCTCATTTCAACAAGATTACCTCAAAAGGATGCTTCAACAGACCAAAAGGAAGTTCCAAGATGGCCAAATATCCAACTTTAATGAAAAGCTTTGCTGA

mRNA sequence

ATGACCAACATCAACAACGATCCTCAACCCCTTCCCGAAACTTCCATTCCTAATCCTTCTCCCATGAAATCAACCACCGAGTCTACCTATGTGAAGAAGAACCCTGATGCATATGAGGTTAGATCTGGAACTTGTCCAGTCGGCACTCCTGCTTCCATAAACTTTGACTTCCATCAAAATGGATCTCAACAACTTCTTGCTGTGGCAAAATATTGCTCTCCCAATCCTTGGAGCTACAAATTTGAAGTACACCTCACTGGTAAGGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTCAGAAGATGAACCACAAGGTTTATTACTTCTGTATCCTGAATATAATATTTGGATAGCTGCTGATCAGCTTCTCATTGGGTGGTTATATAACTTGATGACAATAGAAGTAACTTATCAAGTCAATGGGCATGATACAACAAATGGACTATGGGAGGCACTGCAAGAGTTTTATAGGCTTCAAGCCTCATTTCAACAAGATTACCTCAAAAGGATGCTTCAACAGACCAAAAGGAAGTTCCAAGATGGCCAAATATCCAACTTTAATGAAAAGCTTTGCTGA

Coding sequence (CDS)

ATGACCAACATCAACAACGATCCTCAACCCCTTCCCGAAACTTCCATTCCTAATCCTTCTCCCATGAAATCAACCACCGAGTCTACCTATGTGAAGAAGAACCCTGATGCATATGAGGTTAGATCTGGAACTTGTCCAGTCGGCACTCCTGCTTCCATAAACTTTGACTTCCATCAAAATGGATCTCAACAACTTCTTGCTGTGGCAAAATATTGCTCTCCCAATCCTTGGAGCTACAAATTTGAAGTACACCTCACTGGTAAGGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTCAGAAGATGAACCACAAGGTTTATTACTTCTGTATCCTGAATATAATATTTGGATAGCTGCTGATCAGCTTCTCATTGGGTGGTTATATAACTTGATGACAATAGAAGTAACTTATCAAGTCAATGGGCATGATACAACAAATGGACTATGGGAGGCACTGCAAGAGTTTTATAGGCTTCAAGCCTCATTTCAACAAGATTACCTCAAAAGGATGCTTCAACAGACCAAAAGGAAGTTCCAAGATGGCCAAATATCCAACTTTAATGAAAAGCTTTGCTGA

Protein sequence

MTNINNDPQPLPETSIPNPSPMKSTTESTYVKKNPDAYEVRSGTCPVGTPASINFDFHQNGSQQLLAVAKYCSPNPWSYKFEVHLTGKDVCPEMSIILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKRKFQDGQISNFNEKLC

Homology

[Close]

BLAST of ClCG05G013230 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 79  YKFEVHLTGKDVCPEMSII--LPPSE------------DEPQGLLLLYPEYNIWIAADQL 138
           YK E HL+G  +C  M  +  +P  E                G     P Y +W+ ADQL
Sbjct: 53  YKLERHLSGTKICSPMFTVSTIPSIETGDFGSQASGGASSATGERTFNPLYEVWVTADQL 112

Query: 139 LIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQT 177
           L+GW YN MT EV  Q+ GH++   LW+A+   + +Q+  ++DYL+++ QQT
Sbjct: 113 LLGWPYNSMTPEVAVQLMGHESAKSLWDAIHSLFGVQSRAEKDYLRQVFQQT 164

[Close]

BLAST of ClCG05G013230 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYN 137
           SYK   +LTG   CP   ++   +    +G         L P Y  WI  D+LL+GWLYN
Sbjct: 57  SYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYN 116

Query: 138 LMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQT 177
            M  +V  QV G  T+  LW A+QE + +Q+  + DYLK++ QQT
Sbjct: 117 SMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQT 161

[Close]

BLAST of ClCG05G013230 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 8.8e-11
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVCP--------EMSIILPPSED-----EPQGLLLLYPEYNIWIAA--- 137
           SY+ E HLTG+D CP        + +  +PP ++     +  G+  L P+  I  A+   
Sbjct: 65  SYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLGGQYSGIASLTPQQGITTASNSS 124

Query: 138 ---------------DQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQ 177
                          DQLL+GWLYN MT EV  QV G++    LW A+QE + LQ+   +
Sbjct: 125 PVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGYENYKYLWAAIQELFGLQSRAGE 184

[Close]

BLAST of ClCG05G013230 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVCPEMSIILPP--SEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTI 137
           SYK + HLT ++ CP   II P   +         + P+++ W+  D LL+GW+YN MT 
Sbjct: 50  SYKLQGHLTEENQCPPKFIINPTCGASSRSTTTKTVNPKFDQWVTFDLLLLGWMYNSMTP 109

Query: 138 EVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR 179
           EV  Q+ G +T   LWEA+Q+ + +Q   ++D+L+   Q T++
Sbjct: 110 EVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQK 152

[Close]

BLAST of ClCG05G013230 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAA 137
           SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  
Sbjct: 52  SYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITT 111

Query: 138 DQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR 179
           D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q+  ++D+L +  Q TK+
Sbjct: 112 DLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 168

[Close]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYN 137
           SYK   +LTG   CP   ++   +    +G         L P Y  WI  D+LL+GWLYN
Sbjct: 57  SYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYN 116

Query: 138 LMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQT 177
            M  +V  QV G  T+  LW A+QE + +Q+  + DYLK++ QQT
Sbjct: 117 SMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQT 161

[Close]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAA 137
           SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  
Sbjct: 52  SYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITT 111

Query: 138 DQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR 179
           D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q+  ++D+L +  Q TK+
Sbjct: 112 DLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 168

[Close]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 78  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAA 137
           SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  
Sbjct: 127 SYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITT 186

Query: 138 DQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR 179
           D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q+  ++D+L +  Q TK+
Sbjct: 187 DLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 243

[Close]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 97  ILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQE 156
           I  PS         + P Y  W+  DQLL+GWLYN MT EV  QV G++    LW A+QE
Sbjct: 17  ISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQE 76

Query: 157 FYRLQASFQQDYLKRMLQQTKR 179
            + +Q+  ++DYL+++ QQT++
Sbjct: 77  LFGVQSQAEEDYLRQVFQQTRK 98

[Close]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL
Match: A0A803QCY3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 34/100 (34.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 79  YKFEVHLTGKDVCPEMSIILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVT 138
           ++ +  L G +VCP   +    +ED  + +  L PE+  WI  DQLL+GWLY+ MT  + 
Sbjct: 63  HRLDGFLNGTNVCPSEYVYTGSTEDGSKTIKTLNPEFENWIVNDQLLMGWLYSSMTETIA 122

Query: 139 YQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR 179
            +V G  +  GLW AL++ Y   +  + D  + ++Q TK+
Sbjct: 123 TEVMGSTSAAGLWHALEQLYGAHSKSKMDDTRTLIQTTKK 162

The following BLAST results are available for this feature:

BLAST of ClCG05G013230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887015.1	1.8e-11	35.71	uncharacterized protein LOC120077182 [Benincasa hispida]	[more]
XP_022151683.1	3.9e-11	39.05	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_038902487.1	8.8e-11	35.38	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_031745012.1	1.1e-10	35.92	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
KAA0067279.1	1.7e-09	35.04	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG05G013230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G013230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	1.9e-11	39.05	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7VPY0	8.0e-10	35.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DY80	8.0e-10	35.04	uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=...	[more]
A0A6J1D5J0	1.0e-09	41.46	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A803QCY3	1.0e-09	34.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of ClCG05G013230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G013230.1	ClCG05G013230.1	mRNA