ClCG05G013120 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G013120
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Cell wall protein DAN4-like
Location	CG_Chr05: 18355901 .. 18356290 (-)
RNA-Seq Expression	ClCG05G013120
Synteny	ClCG05G013120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAATCTCTTACTCTTCTTGCTCTTATGATCGCCGCTGTCGTCGGCACTATCGCTCAGGCTCCTTCTACCTCCCCCATCACCTCCCCAGCTCCAGTGTCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTCATCTCCATCTTCACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCGCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

mRNA sequence

ATGGCTTATCAATCTCTTACTCTTCTTGCTCTTATGATCGCCGCTGTCGTCGGCACTATCGCTCAGGCTCCTTCTACCTCCCCCATCACCTCCCCAGCTCCAGTGTCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTCATCTCCATCTTCACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCGCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

Coding sequence (CDS)

ATGGCTTATCAATCTCTTACTCTTCTTGCTCTTATGATCGCCGCTGTCGTCGGCACTATCGCTCAGGCTCCTTCTACCTCCCCCATCACCTCCCCAGCTCCAGTGTCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTCATCTCCATCTTCACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCGCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

Protein sequence

MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPGSSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSRLFTNGFLGR

Homology

[Close]

BLAST of ClCG05G013120 vs. NCBI nr
Match: XP_038887448.1 (putative protein TPRXL [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 79/129 (61.24%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLA++I A+VG  AQAPSTS  TSPAP++SSFDSTSSP +S        SSP 
Sbjct: 1   MAYQSLALLAVIIVAIVGAFAQAPSTSSTTSPAPMTSSFDSTSSPMTS-----FETSSPT 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFH-AQSPTTETAPISSPPAETS 120
           SS  S        +TSPD+S YAPSISVAPAF  DS + + AQSPT E AP  SP  ETS
Sbjct: 61  SSQDS--------STSPDLSTYAPSISVAPAFSSDSTSSNSAQSPTPEIAPTGSPSVETS 116

Query: 121 RLFTNGFLG 129
           RLFTN F G
Sbjct: 121 RLFTNDFFG 116

[Close]

BLAST of ClCG05G013120 vs. NCBI nr
Match: XP_038887469.1 (classical arabinogalactan protein 6-like [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-19
Identity = 78/129 (60.47%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LL ++I A+VG  AQAPSTSP TS AP++SSFDSTSS  +S        SSP 
Sbjct: 1   MAYQSLALLVVIIVAIVGAFAQAPSTSPTTSSAPMTSSFDSTSSLQTS-----FETSSPM 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFH-AQSPTTETAPISSPPAETS 120
           SS  S        + SPD+S YAPSISVAPAF PDS + + AQSPT E AP  SP A TS
Sbjct: 61  SSQDS--------SISPDLSTYAPSISVAPAFSPDSTSSNSAQSPTPEAAPTGSPTAGTS 116

Query: 121 RLFTNGFLG 129
           RLFTNGF G
Sbjct: 121 RLFTNGFFG 116

[Close]

BLAST of ClCG05G013120 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 72/129 (55.81%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLAL++ AV G +AQAPSTSP +SP  ++SS D                    
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVD-------------------- 60

Query: 61  SSTSSPSSLDGTPTTSPDV-SAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETS 120
           SSTSS SSLD T TT+    SA A SISVAPAF PDS+   AQSPTT T+P  SP  ETS
Sbjct: 61  SSTSSSSSLDSTTTTTTTTSSADASSISVAPAFSPDSS---AQSPTTATSPTGSPSGETS 106

Query: 121 RLFTNGFLG 129
           R FTNGF G
Sbjct: 121 RFFTNGFFG 106

[Close]

BLAST of ClCG05G013120 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-15
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  L L+I A+ G +AQAPSTSP ++PA ++SSFDS++S +SS DS T       
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
                      TPTT+   S    SIS+APAF PDS+   AQSPTT T+P  S  AETSR
Sbjct: 61  -----------TPTTTTTSSTDDSSISIAPAFSPDSS---AQSPTTATSPTGSTSAETSR 106

Query: 121 LFTNGFL 128
           LF+NGFL
Sbjct: 121 LFSNGFL 106

[Close]

BLAST of ClCG05G013120 vs. NCBI nr
Match: KAA0056279.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 69/128 (53.91%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL+I AV G +AQAP+TSP ++PA ++SS    +S +SS DS T+      
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
                       PTT+   SA A SISVAPAF PDS+   AQSPTT T+P  SP AETSR
Sbjct: 61  ------------PTTTIS-SADASSISVAPAFSPDSS---AQSPTTATSPTGSPSAETSR 102

Query: 121 LFTNGFLG 129
           LFTNGF G
Sbjct: 121 LFTNGFFG 102

[Close]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 72/129 (55.81%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLAL++ AV G +AQAPSTSP +SP  ++SS D                    
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVD-------------------- 60

Query: 61  SSTSSPSSLDGTPTTSPDV-SAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETS 120
           SSTSS SSLD T TT+    SA A SISVAPAF PDS+   AQSPTT T+P  SP  ETS
Sbjct: 61  SSTSSSSSLDSTTTTTTTTSSADASSISVAPAFSPDSS---AQSPTTATSPTGSPSGETS 106

Query: 121 RLFTNGFLG 129
           R FTNGF G
Sbjct: 121 RFFTNGFFG 106

[Close]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  L L+I A+ G +AQAPSTSP ++PA ++SSFDS++S +SS DS T       
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
                      TPTT+   S    SIS+APAF PDS+   AQSPTT T+P  S  AETSR
Sbjct: 61  -----------TPTTTTTSSTDDSSISIAPAFSPDSS---AQSPTTATSPTGSTSAETSR 106

Query: 121 LFTNGFL 128
           LF+NGFL
Sbjct: 121 LFSNGFL 106

[Close]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 69/128 (53.91%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL+I AV G +AQAP+TSP ++PA ++SS    +S +SS DS T+      
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
                       PTT+   SA A SISVAPAF PDS+   AQSPTT T+P  SP AETSR
Sbjct: 61  ------------PTTTIS-SADASSISVAPAFSPDSS---AQSPTTATSPTGSPSAETSR 102

Query: 121 LFTNGFLG 129
           LFTNGF G
Sbjct: 121 LFTNGFFG 102

[Close]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL+I AV G +AQ P++S   +PAP +SSFDS++  +SS   +T + ++  
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSS---TPAPTTSSFDSSTPSSSSSLDSTTTTTTTT 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
           +S+SS SS D            +PSISVAP   PDS   +AQSPTT  +P  S  AETSR
Sbjct: 61  TSSSSGSSAD------------SPSISVAPGLAPDS---YAQSPTTAASPTGS-SAETSR 109

Query: 121 LFTNGFLG 129
            FTNGF G
Sbjct: 121 FFTNGFFG 109

[Close]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 1   MAYQSLTLLALMIAAVVGTIAQAPSTSPITSPAPVSSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL+I A+ G +AQ P++              ST +PT+S   A +++SS  
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTS--------------STPAPTTSSTPAPMTSSS-- 60

Query: 61  SSTSSPSSLDGTPTTSPDVSAYAPSISVAPAFMPDSANFHAQSPTTETAPISSPPAETSR 120
           SS+SS  S   T TTS   S  +PSIS AP   PDS+   AQSPTT T+P  SP  ETSR
Sbjct: 61  SSSSSLDSTTTTTTTSSGSSIDSPSISAAPGLSPDSS---AQSPTTATSPSGSPSIETSR 109

Query: 121 LFTNGFLG 129
           LF+NGF G
Sbjct: 121 LFSNGFFG 109

The following BLAST results are available for this feature:

BLAST of ClCG05G013120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887448.1	3.1e-20	61.24	putative protein TPRXL [Benincasa hispida]	[more]
XP_038887469.1	2.6e-19	60.47	classical arabinogalactan protein 6-like [Benincasa hispida]	[more]
KAA0056285.1	2.1e-16	55.81	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
XP_008450206.1	3.9e-15	52.76	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]
KAA0056279.1	2.1e-13	53.91	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall pro...	[more]

BLAST of ClCG05G013120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G013120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1H7	1.0e-16	55.81	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPQ2	1.9e-15	52.76	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A5D3C1I1	1.0e-13	53.91	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LB81	3.1e-10	49.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1	[more]
A0A0A0L8Q5	1.2e-09	48.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]

BLAST of ClCG05G013120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G013120.1	ClCG05G013120.1	mRNA