ClCG05G011220 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G011220
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr05: 13225301 .. 13225642 (+)
RNA-Seq ExpressionClCG05G011220
SyntenyClCG05G011220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

mRNA sequence

ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Coding sequence (CDS)

ATGGCGACAACAATGGTAGCGGTAGCTGTTGTCGTCCTAGTTTTGAGTCTGATCAGTCAAAACCATTGCAAGGCTGCTTCTCTAAGTCCTTCAAATTTGGGGAATCAGACGGCAGCAGCAGGGCCATGGACACAGTGCAACAGTCTGGATGAGGACATTGACATGAACACAGCGTTTCCAAGCCTTGCTGCCAGTAATCAGTTCAGTGGTGGGACTAAATATCCGAACAGACCAGTGTGTAATCGGCCGGGAAGAAGATATGACTATAACTGTCCTGGCCCCGAACGAGGAATCCACCCCCAAGAAAAGTATAGCCCATTTAAACGTAACTTTCCACGATAG

Protein sequence

MATTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQTAAAGPWTQCNSLDEDIDMNTAFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRNFPR
Homology
[Close]
BLAST of ClCG05G011220 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-06
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 0 

Query: 3   TTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDID 62
           TTMVAVA++V V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED +
Sbjct: 17  TTMVAVAIIV-VVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDN 76

Query: 63  MNT-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 111
           + T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 77  IETSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

[Close]
BLAST of ClCG05G011220 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 0 

Query: 3   TTMVAVAVVVLVLSLISQNHCKAASLSPSNLGNQ-TAAAGPWTQCNSLD-------EDID 62
           TTMVAVA++V V+S I  +HCKAASL+ SNLGN+ T AA   T CNSLD       ED +
Sbjct: 17  TTMVAVAIIV-VVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLIGVEDDN 76

Query: 63  MNT-AFPSLAASNQFSGGTKYPNRPVCNRPGRRYDYNCPGPERGIHPQEKYSPFKRN 111
           + T AFPSL  + + + G K     VC R G RYD     P++  +P +K S F R+
Sbjct: 77  IETSAFPSLYNTVRTANGQK----AVCGRVG-RYDNQRCLPQKRPNPIQKCSTFTRS 126

The following BLAST results are available for this feature:
BLAST of ClCG05G011220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57814.13.8e-0647.01hypothetical protein Csa_009509 [Cucumis sativus][more]
BLAST of ClCG05G011220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G011220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA121.8e-0647.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
BLAST of ClCG05G011220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011220.2ClCG05G011220.2mRNA