ClCG05G011185 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G011185
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCG_Chr05: 13087376 .. 13088342 (-)
RNA-Seq ExpressionClCG05G011185
SyntenyClCG05G011185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCCTCCAAGCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGTCCAAAAATTGAGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCTACTAAACCGAGGTTGTCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATTTCTTCCACTTCTTTTGCTCTTGTCGTATCCCCAGGTAATCGATGGCTTCTTAACTCTGCTTGTTGCAATCATATGGCATATGACCTCTCCCATGCCTACACCTACTCCTGCAACATCATTTCCCCTCATTTATGCTCCTGACGTAATTGTATGACCATTTCTCATGTCGGCGTAGTTCACACTCTCACCTTGAGTCTTCCCAAAACTTATTGTGTTCCAAATTTAACCTTTAATCTTGCATATGTGAGACAATTATGTGATCTTGGCCTAACTATTTCTTTTTCTCCTAATGGTTGTCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTTGCAAAGTGGGAAGATTGTTTGAACTCACATCTCTTCACCTTCCTGATCATTCGTCCATTTCTGCATCTGTCACTGACTTTGATACATATAAGTGGCATCTCTGTCTGAGTCATGCTTCTTTTAAAAAACTTTGTCATTTAATTTATATTGAAAATCTAAGTAATTTTACAAAATTTGTCCATTTTCATTGTTTGAATTGCTGAAAAG

mRNA sequence

ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCCTCCAAGCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGTCCAAAAATTGAGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCTACTAAACCGAGGTTGTCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATTTCTTCCACTTCTTTTGCTCTTGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTTGCAAAGTGGGAAGATTGTTTGAACTCACATCTCTTCACCTTCCTGATCATTCGTCCATTTCTGCATCTGTCACTGACTTTGATACATATAAGTGGCATCTCTGTCTGAGTCATGCTTCTTTTAAAAAACTTTGTCATTTAATTTATATTGAAAATCTAAGTAATTTTACAAAATTTGTCCATTTTCATTGTTTGAATTGCTGAAAAG

Coding sequence (CDS)

ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCCTCCAAGCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGTCCAAAAATTGAGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCTACTAAACCGAGGTTGTCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATTTCTTCCACTTCTTTTGCTCTTGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTTGCAAAGTGGGAAGATTGTTTGA

Protein sequence

MNLFVLLCYTCNRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
Homology
BLAST of ClCG05G011185 vs. NCBI nr
Match: KAA0058547.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 8.8e-39
Identity = 94/160 (58.75%), Postives = 108/160 (67.50%), Query Frame = 0

Query: 12  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCP 71
           N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCP
Sbjct: 231 NPLPSLDAVIQEILFEEKRLGINLSKHSDVVLASTYSPLGASSTFCKNRKLTGHKFIDCP 290

Query: 72  KIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISD 131
           KIECRYCH  GHILDN P + PR   Y T++KN TKPR S ++     N  +P   QISD
Sbjct: 291 KIECRYCHKPGHILDNCPIKPPRPRSYFTRAKNFTKPRNSSVVAATLDNSTTP-QFQISD 350

Query: 132 LQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
           LQ LL QLISS+S AL VS GS S D  D+W   QSGKIV
Sbjct: 351 LQSLLNQLISSSSSALAVSSGSGSVDGTDDWDGSQSGKIV 389

BLAST of ClCG05G011185 vs. NCBI nr
Match: XP_016903357.1 (PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 7.4e-38
Identity = 92/158 (58.23%), Postives = 106/158 (67.09%), Query Frame = 0

Query: 14  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKI 73
           L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKI
Sbjct: 20  LPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASSTFCKNCKLIGHKFIDCPKI 79

Query: 74  ECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQ 133
           ECRYCH  GHILDN P + PR   Y  ++KN TKPR S +I   S N  +P   QISDLQ
Sbjct: 80  ECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVIAATSDNPTTP-QFQISDLQ 139

Query: 134 DLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
            LL  LISS+S AL VSP S   D  D+W   QSGKIV
Sbjct: 140 SLLNLLISSSSSALAVSPSSGFADGTDDWDGSQSGKIV 176

BLAST of ClCG05G011185 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-36
Identity = 83/161 (51.55%), Postives = 106/161 (65.84%), Query Frame = 0

Query: 12  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCP 71
           N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP
Sbjct: 182 NPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANCP 241

Query: 72  KIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSND-DSPLSRQIS 131
            IECRYCH RGHILDN P + PR PG+  K K S K   S ++  A+S+D   P S Q++
Sbjct: 242 TIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQLT 301

Query: 132 DLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
           DL DLLKQ+ISS S AL V+PGS  +D   +W   + G I+
Sbjct: 302 DLHDLLKQVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

BLAST of ClCG05G011185 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-36
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 0

Query: 12  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCP 71
           N L SLD AIQEI FEE  +GI+ S  S+V L +THS + + + FCKN  + GHKF++CP
Sbjct: 199 NPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCP 258

Query: 72  KIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSND-DSPLSRQIS 131
            IECRYCH RGHILDN P + PR PG P K K+STK     I+  A+ +D  +P + Q++
Sbjct: 259 TIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPIVAAATPSDITTPQNFQLN 318

Query: 132 DLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
           DL DLLKQ+ISS S AL V+PGS  ++   +W+  + G I+
Sbjct: 319 DLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII 359

BLAST of ClCG05G011185 vs. NCBI nr
Match: KAA0032344.1 (uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK31617.1 uncharacterized protein E5676_scaffold340G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-34
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 14  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKI 73
           L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKI
Sbjct: 155 LPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKI 214

Query: 74  ECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQ 133
           ECRYCH RGHIL+N P + PR   Y T++KN TKPR S ++  A+ ++ + L  QISDLQ
Sbjct: 215 ECRYCHKRGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVA-ATLDNPTTLQFQISDLQ 274

Query: 134 DLLKQLISSTSFALVVSPGSR 155
            LL QLISS+S AL VS G+R
Sbjct: 275 SLLNQLISSSSSALTVSSGNR 294

BLAST of ClCG05G011185 vs. ExPASy TrEMBL
Match: A0A5A7UUZ4 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00140 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 4.3e-39
Identity = 94/160 (58.75%), Postives = 108/160 (67.50%), Query Frame = 0

Query: 12  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCP 71
           N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCP
Sbjct: 231 NPLPSLDAVIQEILFEEKRLGINLSKHSDVVLASTYSPLGASSTFCKNRKLTGHKFIDCP 290

Query: 72  KIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISD 131
           KIECRYCH  GHILDN P + PR   Y T++KN TKPR S ++     N  +P   QISD
Sbjct: 291 KIECRYCHKPGHILDNCPIKPPRPRSYFTRAKNFTKPRNSSVVAATLDNSTTP-QFQISD 350

Query: 132 LQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
           LQ LL QLISS+S AL VS GS S D  D+W   QSGKIV
Sbjct: 351 LQSLLNQLISSSSSALAVSSGSGSVDGTDDWDGSQSGKIV 389

BLAST of ClCG05G011185 vs. ExPASy TrEMBL
Match: A0A1S4E559 (uncharacterized protein LOC107992140 OS=Cucumis melo OX=3656 GN=LOC107992140 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.6e-38
Identity = 92/158 (58.23%), Postives = 106/158 (67.09%), Query Frame = 0

Query: 14  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKI 73
           L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKI
Sbjct: 20  LPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASSTFCKNCKLIGHKFIDCPKI 79

Query: 74  ECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQ 133
           ECRYCH  GHILDN P + PR   Y  ++KN TKPR S +I   S N  +P   QISDLQ
Sbjct: 80  ECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVIAATSDNPTTP-QFQISDLQ 139

Query: 134 DLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
            LL  LISS+S AL VSP S   D  D+W   QSGKIV
Sbjct: 140 SLLNLLISSSSSALAVSPSSGFADGTDDWDGSQSGKIV 176

BLAST of ClCG05G011185 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 83/161 (51.55%), Postives = 106/161 (65.84%), Query Frame = 0

Query: 12  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCP 71
           N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP
Sbjct: 182 NPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANCP 241

Query: 72  KIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSND-DSPLSRQIS 131
            IECRYCH RGHILDN P + PR PG+  K K S K   S ++  A+S+D   P S Q++
Sbjct: 242 TIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQLT 301

Query: 132 DLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV 172
           DL DLLKQ+ISS S AL V+PGS  +D   +W   + G I+
Sbjct: 302 DLHDLLKQVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

BLAST of ClCG05G011185 vs. ExPASy TrEMBL
Match: A0A5A7SMD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00040 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 14  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKI 73
           L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKI
Sbjct: 155 LPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKI 214

Query: 74  ECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQ 133
           ECRYCH RGHIL+N P + PR   Y T++KN TKPR S ++  A+ ++ + L  QISDLQ
Sbjct: 215 ECRYCHKRGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVA-ATLDNPTTLQFQISDLQ 274

Query: 134 DLLKQLISSTSFALVVSPGSR 155
            LL QLISS+S AL VS G+R
Sbjct: 275 SLLNQLISSSSSALTVSSGNR 294

BLAST of ClCG05G011185 vs. ExPASy TrEMBL
Match: A0A1S3B566 (uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 14  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKI 73
           L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKI
Sbjct: 155 LPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKI 214

Query: 74  ECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLIIIDASSNDDSPLSRQISDLQ 133
           ECRYCH RGHIL+N P + PR   Y T++KN TKPR S ++  A+ ++ + L  QISDLQ
Sbjct: 215 ECRYCHKRGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVA-ATLDNPTTLQFQISDLQ 274

Query: 134 DLLKQLISSTSFALVVSPGSR 155
            LL QLISS+S AL VS G+R
Sbjct: 275 SLLNQLISSSSSALTVSSGNR 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058547.18.8e-3958.75Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
XP_016903357.17.4e-3858.23PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo][more]
XP_008445037.13.1e-3651.55PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo][more]
XP_031739694.15.3e-3650.93uncharacterized protein LOC105434738 [Cucumis sativus][more]
KAA0032344.15.0e-3459.57uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UUZ44.3e-3958.75Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3... [more]
A0A1S4E5593.6e-3858.23uncharacterized protein LOC107992140 OS=Cucumis melo OX=3656 GN=LOC107992140 PE=... [more]
A0A1S3BBA11.5e-3651.55uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=... [more]
A0A5A7SMD62.4e-3459.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B5662.4e-3459.57uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 53..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011185.1ClCG05G011185.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding