ClCG05G010950 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G010950
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Cold-regulated protein
Location	CG_Chr05: 12628835 .. 12629068 (+)
RNA-Seq Expression	ClCG05G010950
Synteny	ClCG05G010950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

mRNA sequence

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Coding sequence (CDS)

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Protein sequence

MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI

Homology

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 4.1e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: XP_031737948.1 (uncharacterized protein LOC116402578 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 7.0e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 3.5e-35
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. ExPASy TrEMBL
Match: A0A1S3C5C8 (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of ClCG05G010950 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.4e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.5e-36
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. ExPASy TrEMBL
Match: A0A6J1CQ64 (uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013291 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. ExPASy TrEMBL
Match: A0A2N9J3H0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M  GIG+P+C++CGT SNPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTGGIGIPVCVQCGTPSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of ClCG05G010950 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-27
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALVY F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VFPSVSNAVPI 78
          V+P VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of ClCG05G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457074.1	4.1e-36	93.51	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
XP_031737948.1	7.0e-36	94.81	uncharacterized protein LOC116402578 [Cucumis sativus]	[more]
XP_023528466.1	1.2e-35	93.51	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	1.6e-35	92.21	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_022143411.1	3.5e-35	94.81	uncharacterized protein LOC111013291 [Momordica charantia]	[more]

BLAST of ClCG05G010950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G010950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5C8	2.0e-36	93.51	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
A0A0A0LA45	3.4e-36	94.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
A0A6J1FA13	7.5e-36	92.21	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1CQ64	1.7e-35	94.81	uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A2N9J3H0	1.0e-32	85.71	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1	[more]

BLAST of ClCG05G010950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	2.8e-27	70.42	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G010950.1	ClCG05G010950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane