ClCG05G009180 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G009180
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTranscription elongation factor 1 homolog
LocationCG_Chr05: 9969580 .. 9978969 (+)
RNA-Seq ExpressionClCG05G009180
SyntenyClCG05G009180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACAGAACGAAGTAAAGGTAAACGCAAAGAGTACAAACGGATAAAGGAAGGTCTTGAGTTGGATTTGGTTATCAAGGGTAAACCACATCGTCGGATGTGTTATCACACAAGAGAAAAAATTGTAGCTAAGACTTGACATAAGGGAAGAAAGTTGGACGCATGGTATGCGGTAAGGTACAAATGCATAGTAGAGTTCGTTTGAGACATTGACGCCTAGTAGTATGCAGTGGAGAAATAGGGTCAAAGGTAGTATGGCCGAGAGTAAGGAAAAGGAGTAAAGAAGCTAAAACCTGGAAGAGGATTATATGAATGCATAGGGAACACTATATTGAAGGAATAGTTTGTATATTGGAGTAAGTTGGACACATAAGATGAGTTGGTAAAGGTTGCATGTCGGATGTGTCATGCAGCGTGACAGGTGGTAAACAAGTGGCAAAAAGAGAGGAGAAGTTGGATTCATCGCAAAACTATAAATAGGGCCTTGAAGGAAAAGGAGCGGTGGATGATAAAAAAGTCTTGAGTTCTGGAGAGAAAGTAGAGAGAAGGCAAAAAAAGGTAGACCTTGCGTTCAAGGAGATCTATGCTTCCAGGGAGTGAAGTCAGAAGAGTTGGTTGGAAGGTTGCACATTGCGTTCAAGTAACTAACCTTGCGTTCAAGGGCAGGGTTGTGTCCAACCGAGCTGACAGAGGAATATAAGTTGCCTTGCGTTCCAGACTTTAGAATGTTGCGTCCAAGAAGCTCGGGAAAGAGAATCAGAAGGAAGGAAAAGGAACTATCTTTGAGCAAATATTATGTGAGTAATACTAATGTTTTTCAAAATATAAATGCGTTCTCTATAATTAATATCATTGGTTTTGTAATATGAATAAGTATTCATGAGTTTCAACGTATAGAGCATGCGTTTATATTTAAAAAGCACTTGAGTATGCTGGTTATTTGAAATGAGTTTATTAAGAAGCATGTTGTTTGATAATATATGATTTTCATGGTTTTATTGAAAAACATGCTGTTTGATGCTATATGATTTCATGAAAGATTTGGAAACGATTAACTTATGAATTTATGATATGATGTTTCCAAAACATATTGTGTAGTTTATAAAATCTTGGAAATGGCACCCAAAGCTCAAGGACTAGAAGAAGGCAAATGGGTAACCGGAATATAGAAATGGGACCCCGATGCTCAAGGATAAAAGGAAGGCATATGGGCAGCCCGGATTATAATACCTATGTGCACATAGAGGAATATACAACGCTAATGTGTTGAGATTACTCCACACAGCTAAGAATAATTGACGTTGAGTAGCGTAGAGCACGGCTCCGCCTCAGCTAATATGTTGAGATTACTCCACACATCTCGAACTACGGGAGGGTAGTTCAGGATGGGGTGTGACAAAGATGCTTAATTTAGAGGATTAAACATGCAATTAAAAAGAAAAACCAAAGTTTCAAGAATACTTACCCTTGAAGCTTCAAATTCTCCTTCAATTCTTGATGAATTTCAGCACCACTTGGTTGTAGACCACCACAAGAGTCTTCTCTACTATTCTTTTGGCTTAGATTGGATGGCGGGATCCAAAATTTGTGGTGAATTTGAGAAGGAATGAAGGTTGGGAAAAAGATGAACAATGGATGAAATTTTGCAAAATTAATCCTTAATTTCACAAAATTCTTGAACCTTTTTATGTCAAAATCATCTCTATTTGTTAAAAAATAACATGCAATCCAATTGCATCAAAATTTGACAACACAAAATGGTTAATTTGTTAGTTAATTGTGAAGAAGACAACCAAGCTCCTAACTTAGTTAGTGGGAAAATCCAATCTTCAAAAAATCAATTTTAAAATCAATTTTCAATGAATTTCCAAAAATTGAATTAAAATTGATTTTTAATTTAAAAAAATTAAATAATTAAATAAAAATAGTTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTACTTGTCCCGATTTTTCTAAAAAACTGATATGAATCCCTATTCATATGATTAATATTTAAATCATATTTAAATATTATAATTAACTCTATTTGTCTGTTTAATTCGTAATTAAACGTCGATATATCATATATATCTGACTTTCATTCCTTAAGCCAAGATTTGAATGGTTCAAACTTAATCACCACACTATCTAAGATTTTAGTCCATTTATGAGCTAGTAGAGGGACCTAATGGACCTATAGATCATGAGCTCCAACGATCTGAGATTAACCGGCCAAACTCTTTAACCTAGCTAACCAACATTCGTTAACTAACGGGAAACTCCACTAAAGCCCGTAACTGCACTCTCCTCACTGTAGATATATTTATGTCCATTTGATATAATCGTCATCGATAAGTCAATCTTTCACAGGTCGTTCATAACTTCAGCTAGGTCAAATACCGATTTACCTCTGAGTTACATCTTTTTCCTTAAGTACCACTGCCCCTCTAATGAACAATTGATTTAGAATCTAATCACTAAATTCATTCCCTCTCGGGTCAGTGAGAGGATGGGGCCCTTTATTCAAGTCCTGGGAACAACACTTAAAAGAACCTCTCTTCTATCCCTAAGTTGGGTAGGAGTGAATTCCGTCTTGCAAATTCTATGTCCCCAGCTATCTACTCGGTCTTATCCCTGAAATGGGAGGAATGTTGAGCAGCGCTATTGAGCTTACTCTCACCTATGTAGATCAAGGGATAATTCTAAATAAACAGGAGTTCATAGATAGCTCAAGATTTAGATCAAGTTATCTAGGTCATCGATAAGTGAAATTAATCAGTGTTAATCGTAAACGGTGTTAATACGTAACAGTGATTATTTCATGGTCTATCTTACACAATCCCATTATGTAGAATACCCCCGCTCACATGTCTCTACATGAATAAATTAGGATCACTTCATTTATGACACCTTACAACATTTGTAACAATCATGAAGCGGGCCGTATTCAATAGTGTCTTCAAGAAGAGGTACCCAACTTGATCCATGTACTATAGACTATTTAGGCTACTTACTTGAACTTGATCCTGTTTATGTCTCCACATAAAGTCCAAGTACTCATGATAGTAGCCAAGGGTTCGTAATTTAATTGGATTTAGAGTTAATAAATAATTAATTCACTTGAATAACTTCATATGTACTAAAATTCACTTATTTAATAAAAATACAAGTTTTAGGACATACAACCCAACAAGCTATGCATCCAACTTCCACTTCTTGGCCTAAGTGTCACCTTTCAACTAACATGAATTGTCTAACACTTAGCCAAAAACTTCCTAAAACACCAACCATGCTCCCATAATGCCCCCTCTAGGCGTCTAACTCTTGACATTTCCTCCCGAGGCATGCGTTCAACCTTTGACTCTAGGGTTGATGAGTTGAACTTCTCATATTTGGGCCTATGCTCCCAACTTTCTCTTCCAACACTTAGTTAGTTTTCTCAATCCTCAAGCCTATGAGTTGAACTCCAAGTTTAACTCATAGTACTAAGTTCACCTCATAGTTTTCTTTTTCCAAGCATAGTTGTCTTCCATTTTCAAAGCATAGTCCACCACTTTGAAAATCTCATAGCGTAGTTTTCTCTCAATCATTTATGCGACCAATTCTCTCCTCATAACTCAAACTTGGACAAACACTTTTCTTCCCTTATTGTGTTCAACGCATGGTGCCTTTAATTATAACTCTACAAGCGTAGAAGTTCATCCTACTTACCCTTCTCAAATTTTTCTAACTCCACAGACTTGCACTAACTATACACATAGAAACTTCTCCAAATTCTCCCCAACCCCGCAAGACTCATTTCAACTCTTTACAAGGGAGTCAGTTTAAGATTTTTGATATCACATATTCTCTCTCATGTCAATTTTTTTTTCTTTCTTCTCAACTTAGATTCATAACACTTTTCTTTTTCTCCCTCTCACCTCTATTATCTTTTTCTCTTTCTCACTTATGTTTTGTTTGGCTTCTCTTTCTCTATGGTTTGAACACAACTCAAACTATTGAAGAAAAAATATTGTGTACTCTAAAATTAGGACCAAAGTGATTTTTTCTTTGTTTAATGGTCAAATAAGCTATCTTCGAACATGTAGATCTCAAAAGTTACAATAATAATAATAATAATCAAATTTGATCAAATAAACTTATAGTTATGGCTTATAGTTTAAAATTTGAATCATTTTAGTTTTCGAAACCTTAAAGAATCGATATAATTTTTGCTCTGTTTTATAAGTATGGTTGGAAGAAAAAAAAAACATACGAAAATGAATAGTCATTTAACAAAAATAAAATTGTGTCGAATAGGATATGATCAAAGTAAAATTGCACACAGGGGAAAATGCGTAAGCAATCAAAACATGAATAGTGGTTCATGTACTTATCAAAGTGATTATTAATCTCTTTTTCCTTTTGTCATTTTTGTGATAAAAATTTCAAAACAACGCCATACTTAACAACCATTAAAAATATTACCATAGCTTTGTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCATTGGCTACAAAATGGGTATTGGAAATATAATTTTGCAAAAAATATCAAAATAGAGTTTTAAAAGAATAGAGATGAAAATATAAAGGCTAAACAAACATTTTCGCTTCTAAACTTTAATAAAACTAAAAGTAATAAACTTTAATTAATAACAATTTAAAATATCAATTTTTACCACGTAGGATCTGTCCATAACTATTTAACGATGAATCTTATAAATATCTCTTACGCTTCTAGATTTTTTTACTTTTTACTAATATTTTTAAAAACCCATCTAAATTTTAAAATGAAGAAAAATAGTTTTTAAATTTATTTTTTATTTGATTAATAATTCAATTCTTTTACTTGAAAAATATGAGAGTTATGGTGGGAACTAACATGATTTTCAAAAACAAAAATTACTAAATCATTATTAAACAATGTCGTATTAATTTGGTTTATGTAGTTTATAAACATATTTGGTTTATAATCAATTTATTGGTCATCAGTAGTAAAAAAAAATGTCATTAAATTTTAACGACAATTTTTACAATCAAAATTAGGGGTATATATGAGTTGAGTGTATTTTTTGGACCAACCTGAAAATTTAGGTTGGTTAGGTTGGTAACTCAAAAGAACCAAATAAAGTCTCCAACTCAATTCTTAAAATTTAGGTTGGGTGGTTGGTTTATAACTTTAATTTTCTTTTTAATTTAGAACGTAAATTTATCTATAACACATATGGCTAATAACTAAAGTCTAATAAATTTATTATAAACTTTAAATAAAGACAATCATCATAACAATTTTAAAAGAATATATTAAAAATTCACAAATTCATCCAATCAAACTTGAAACACACACACACATATGTGTGTGTAATTCGGCAGATGAGAGGAGAAATGGAGGGAGATCGAAGGAGGAGGAATCGAAGGGGTTGGGTGGGATTAGGGTTTCTAATCGGCAAATGAGGAAAATAATGGAGACAGATGGGCAGACGAGAGGAGTAATGGCAGAAGGAGGAGTAGCAGAGAGAAATCGGAGAACGAGGAGTCCAAGGGAATCAGAGAGAAGGAGAAGGAGAAGAATGAATGCGGAGAGAAGGCAACAGAGAGAGAGAGGAGATTTCGGGCAGAGTGTGCATGGGGAAGTGGCGGAAAACTATGGGAATGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGATTAGAATGGGTTGTAATCCAAACCAACCCCAAACCAATTTCTTGTTTTCTCAAGAGGATTGGTATTGCTCCTTCATTATTCATCAATTTTACATAACTTTTTTTTGACCTCCTCCTTTTTTGTTGCTTTAAGAGATAAAGAAGGTCAAATTCAGGTTGTTGTTCAAGTTCGTTCAGTTATTTCATTGTAATTAGACCTAACAAGAACGGAATCACGCTTTGTAGGATTTGAACCTACGACATTGAGTTTTGGAGACCCACGTTCTACCGAACTGAACAAGCCCATTCCCCAAACATGGGTTTTGTAACCATATACAATACCCCAAACATGCCCTAAGAAGATTGGAGAGATGAAAGAAAAATTGGAAAAAAAAGGACAAAAAACAAAGGGAAGAAGAAAATATGAGGAGATGGAAAAAAAAAATAGAAAAAAAAAGGAAAAAGAAAAGAAAAGAAAATATGAGGATATTGGGGAGATGAGAGTAAAAGCTAGAAAAAGAAAAAAAAGAGAAAAGAAGTTGTGCAAAACAAGAGAGGGCAAAATTGAAAATCACAAAATTTTAAAAGTTGACTAGTCAAGATTTGTCCAAATATTTAAAAAAATATGTTATATTTTTAGATTTTTCCACTTATTTTGCTATCTATTACAAATGTCCATAAATTTATCTATCTATATATATTTTTTTGCTTTTTGAATGTGATTTGGGGGATTATTTTTTTCTCTTTTTTCTCCCCATAGTTCCTGTTGGACAGTGAATTAGTCAAGGGTATTTTAGTAAAAATGTGAATGAACTTTTCAATCTCAGATGTCTATAAATACCACGGCCTCTTTCAATTCCTTCTTCCATTCTTCAATTCGACGAGCGATACGATTGCAACTGCGAACGACAATCCCTCCCAATTCGATCAGCGATCAGGTGCGTCCTCTTTATTCTCTCTTTTCGTAGGGTTCGTAGTTCTAGGGTTTTATCAAGCTTTTGACTGGCAAATTATTGTGCTTTTGTCCTTACTGCCTGCAACTTAGGGTTTTACTTGTTGTTGTATCTTGTGGTGTGCTTACCGTTCTGTGTAATTTTGAACGTTCTTTGCGTTTTTCGTTTCGATTGGTTATTCTTTCATGTAGTTTCAATTTTTTTTGGTGGGGGTGGAGAATAGAATTTGCGAGACGGCGATTGAGTAACTTTTAGTTATGTTATCCGTGGCGAGAATAGAATTTTCCGGAACTTTAGTTATTATTTGCGTTTGGTTCTTTCCATAGTCGATGGATTTCTACGATTTTGTAGGGAGTGAAATTTGCATCTCTAGTATCGTTTTACTTAATTTCGGTATTTCATCAATTGGGTATGAACGTTTTGGGATAATGAGGATGGGTGGTGAATATGAGTTTCACTGTATGATGATTGGTAGCTTATTGACTGTTCTTGACCCGTTCCTACTCCACCCGTCTCTCCTCATCTTCATCTTTTTATGAGCCTTATGAGTCACATTGGTATGACATCGGAGGCAATGGCATCTGTTCTCTTAGGACAAGGAAAAACAGCAAACGAAAGTGAAACAAGAGGAGAATGCTCGACCTCATATGGGAAAAAGCTACATCTCTGCTTCAGGAGGGGTCATTGACGGCATGAATACTAGCCCTTCGATCTCCCTTACTCTTTTTGGCCTTTTTCTCCACATCGGTTTCTTGTGACATTGTTATGGATCACCGGAGTATGCTTTCGGCTTTGTTTTTGGCCTGCTTTTGGGGTGCTTAGGTTTGATGTTCAATGGATTGTTGTTTTGTTTAGTTTTCCCTTTTTTTGTGGGCATCTTGCATCGTCAGTCCATTGGTTTTTCTTTCCTTTTTGTTGCCCCCCTCCCCTATGGACTAAATTGTATATTTTTCTTTCGATTGGATTTCCCTTGGTTCATTTTTATCTCTTTTGGATATTTCATTTGTAATCTGTTTCTTATCCAATAATAATTATAATAATAATAAAAAAGCTGTGTTTGAAAGATCTATGCTTTATACCCTTTTAAGTTTGATTACAACCCTCATTTTGAAGACTGATTGATATTGATGCTGTTATGGATGTGAACAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATGTAAGTTTGCATGTGGTTCCTTTTGGGTTTTGGGTTCTTGTAACACGTGAGGGTTGGAAGAGGGACATGTTATAAGGATTTTAGTATTTTCGTGGCATAGTGAAAAGGCTGGAACAGTGAATATGTATAATATTCAATTACTTGGCTAATGGACTAGTCTCTCTGTTTATTGCCTCATTTGTTTTGCATTTTGACAAGGGTGTTTCTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGGTATTCTCTTCGAATCTCTTATTTGCTATCTGTTGGGTGTGTCTTACTTTGTGCTTTATATTATGACGCGATAGAAGCAATTCATGAATTCTTTTTTTTAGGATTTTTCTTTTAGAATATCTTTTAATGGATATTTTTGTCCTTCTGGAGCAGTTTTGTTTGATCTGTACTATAAATGGTGCACAGGGCTATAGGATTATTTTAGTGAACCCGATTTTCTCTGTGCTCAAATAGATGGATGAGTGGAAGCTTTGTCATGGAGTTGTCCCACCTTCCATCATCACTATAATTTTGTTCCTGTTGTAGAGAAGTCTATCAGATGAAAATACGTCCAAGTGCGTGTAGATCATCATGTATAATTTAGGTTGATCAAATATATCTCCGTGTCTAATCTAGAGCTTACATTTTGTTTTCATTGTTCTGCCTGTGTGAGAAATTTAGTTGCACTAACATTTCAATTCTTTTATTTTGCAGCCTTGAGTGAGGCAATTGACATGTAAGTAAATTAAAAGCAACTGGGTTTTGTCAATATTGTTGCTTTATAGTGTGCTTCAATTGACGTAATATCGTCTTGCTTTCGATCAGATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

mRNA sequence

ATGGACACAGAACGAAGTAAAGGTAAACGCAAAGAGTACAAACGGATAAAGGAAGGTCTTGAGTTGGATTTGGTTATCAAGGGGTTGTGTCCAACCGAGCTGACAGAGGAATATAAGTTGCCTTGCGTTCCAGACTTTAGAATGTTGCGTCCAAGAAGCTCGGGAAAGAGAATCAGAAGGAAGGAAAAGGAACTATCTTTGAGCAAATATTATATTGGATGGCGGGATCCAAAATTTGTGGTGAATTTGAGAAGGAATGAAGATGAGAGGAGAAATGGAGGGAGATCGAAGGAGGAGGAATCGAAGGGGTTGGGTGGGATTAGGGTTTCTAATCGGCAAATGAGGAAAATAATGGAGACAGATGGGCAGACGAGAGGAGTAATGGCAGAAGGAGGAGTAGCAGAGAGAAATCGGAGAACGAGGAGTCCAAGGGAATCAGAGAGAAGGAGAAGGAGAAGAATGAATGCGGAGAGAAGGCAACAGAGAGAGAGAGGAGATTTCGGGCAGAGTGTGCATGGGGAAGTGGCGGAAAACTATGGGAATGAAGGNNNNNNNNCGATCAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

Coding sequence (CDS)

ATGGACACAGAACGAAGTAAAGGTAAACGCAAAGAGTACAAACGGATAAAGGAAGGTCTTGAGTTGGATTTGGTTATCAAGGGGTTGTGTCCAACCGAGCTGACAGAGGAATATAAGTTGCCTTGCGTTCCAGACTTTAGAATGTTGCGTCCAAGAAGCTCGGGAAAGAGAATCAGAAGGAAGGAAAAGGAACTATCTTTGAGCAAATATTATATTGGATGGCGGGATCCAAAATTTGTGGTGAATTTGAGAAGGAATGAAGATGAGAGGAGAAATGGAGGGAGATCGAAGGAGGAGGAATCGAAGGGGTTGGGTGGGATTAGGGTTTCTAATCGGCAAATGAGGAAAATAATGGAGACAGATGGGCAGACGAGAGGAGTAATGGCAGAAGGAGGAGTAGCAGAGAGAAATCGGAGAACGAGGAGTCCAAGGGAATCAGAGAGAAGGAGAAGGAGAAGAATGAATGCGGAGAGAAGGCAACAGAGAGAGAGAGGAGATTTCGGGCAGAGTGTGCATGGGGAAGTGGCGGAAAACTATGGGAATGAAGGNNNNNNNNCGATCAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

Protein sequence

MDTERSKGKRKEYKRIKEGLELDLVIKGLCPTELTEEYKLPCVPDFRMLRPRSSGKRIRRKEKELSLSKYYIGWRDPKFVVNLRRNEDERRNGGRSKEEESKGLGGIRVSNRQMRKIMETDGQTRGVMAEGGVAERNRRTRSPRESERRRRRRMNAERRQQRERGDFGQSVHGEVAENYGNEGXXXISLTLQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
Homology
[Close]
BLAST of ClCG05G009180 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-42
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 192 QEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFST 251
           Q+MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFST
Sbjct: 37  QDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDLKNLIGEASCRICQESFST 96

Query: 252 TITALSEAIDIYSEWIDECERVNTLEDDAA 282
           TITALSEAID+YSEWIDECERVN LEDDAA
Sbjct: 97  TITALSEAIDVYSEWIDECERVNNLEDDAA 126

[Close]
BLAST of ClCG05G009180 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of ClCG05G009180 vs. NCBI nr
Match: XP_015899142.1 (transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61  TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]
BLAST of ClCG05G009180 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 178.7 bits (452), Expect = 6.9e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of ClCG05G009180 vs. NCBI nr
Match: KAF7803378.1 (transcription elongation factor 1-like protein [Senna tora])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
            ALSE IDIYSEWIDECERVN LEDD A
Sbjct: 61  NALSEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-40
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDD 280
            AL+E IDIYSEWIDECERVN +EDD
Sbjct: 61  NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.7e-39
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDD 280
           TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 254 TALSEAIDIYSEWIDECERVNT 276
            +LS+ +D+YS+W D  E VN+
Sbjct: 61  NSLSQPVDVYSDWFDAVEEVNS 82

[Close]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 253
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 254 ITALSEAIDIYSEWIDECERVN 275
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 253
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 254 ITALSEAIDIYSEWIDECERVN 275
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match: A0A1S3C2B7 (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match: A0A6P4AU33 (Transcription elongation factor 1 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107432510 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61  TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.8e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDDAA 282
           TAL+E IDIYSEWIDECERVN LE+DAA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]
BLAST of ClCG05G009180 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 162.5 bits (410), Expect = 4.8e-40
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 194 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 253
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 254 TALSEAIDIYSEWIDECERVNTLEDD 280
           TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:
BLAST of ClCG05G009180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896920.11.6e-4295.56transcription elongation factor 1 homolog [Benincasa hispida][more]
XP_004146241.12.8e-4298.86transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED... [more]
XP_015899142.12.4e-4196.59transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 tran... [more]
XP_010090451.16.9e-4195.45transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509... [more]
KAF7803378.11.2e-4095.45transcription elongation factor 1-like protein [Senna tora][more]
BLAST of ClCG05G009180 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LHP01.2e-4089.53Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399... [more]
Q8LEF36.7e-3987.21Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5... [more]
P360537.0e-2052.44Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
A4IFR31.2e-1953.66Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV... [more]
P600021.2e-1953.66Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ... [more]
BLAST of ClCG05G009180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAG51.4e-4298.86Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23... [more]
A0A1S3C2B71.4e-4298.86Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606... [more]
A0A6P4AU331.2e-4196.59Transcription elongation factor 1 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107... [more]
W9R7743.4e-4195.45Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0... [more]
A0A2P5DXC09.8e-4193.18Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa... [more]
BLAST of ClCG05G009180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46030.14.8e-4087.21unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..179
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 194..274
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 195..271
e-value: 9.0E-30
score: 102.5
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 178..281
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 209..275
e-value: 2.3E-28
score: 100.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G009180.2ClCG05G009180.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0008023 transcription elongation factor complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000993 RNA polymerase II complex binding
molecular_function GO:0003746 translation elongation factor activity