ClCG05G004533 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G004533
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 4315244 .. 4315549 (+)
RNA-Seq Expression	ClCG05G004533
Synteny	ClCG05G004533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTCTCTATATAACTCTAGCAATGGCAATCCTTCTCCTGTTGCAGCTTCAGCCAAACTTGGCTGGTAGGACTTTGCATGAGAAACCACTTATGGTGAGAGGAACCGAGCTGAAGCTGCAATCTCTTCAGAGAGTCAGTGTACCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCCGGCTGTCCCCTAAAAGAGAGACACTATGCTGCCGACCGTTCCACGCAACATCTGAGCACTCACCGACGCCATGCTGCCCCTGTTCGTGTCGTCGAGGCTCTCGTCTGA

mRNA sequence

ATGAAATTTCTCTATATAACTCTAGCAATGGCAATCCTTCTCCTGTTGCAGCTTCAGCCAAACTTGGCTGGTAGGACTTTGCATGAGAAACCACTTATGGTGAGAGGAACCGAGCTGAAGCTGCAATCTCTTCAGAGAGTCAGTGTACCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCCGGCTGTCCCCTAAAAGAGAGACACTATGCTGCCGACCGTTCCACGCAACATCTGAGCACTCACCGACGCCATGCTGCCCCTGTTCGTGTCGTCGAGGCTCTCGTCTGA

Coding sequence (CDS)

ATGAAATTTCTCTATATAACTCTAGCAATGGCAATCCTTCTCCTGTTGCAGCTTCAGCCAAACTTGGCTGGTAGGACTTTGCATGAGAAACCACTTATGGTGAGAGGAACCGAGCTGAAGCTGCAATCTCTTCAGAGAGTCAGTGTACCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCCGGCTGTCCCCTAAAAGAGAGACACTATGCTGCCGACCGTTCCACGCAACATCTGAGCACTCACCGACGCCATGCTGCCCCTGTTCGTGTCGTCGAGGCTCTCGTCTGA

Protein sequence

MKFLYITLAMAILLLLQLQPNLAGRTLHEKPLMVRGTELKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV

Homology

[Close]

BLAST of ClCG05G004533 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKFLYITLAMAILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCT 60
           MKFL+  LAMAILLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCT
Sbjct: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60

Query: 61  FIPGTNGPGCPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           FIPGTNGPGCPLKERHY A RST+  STHRRHAAP RVV+ALV
Sbjct: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of ClCG05G004533 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 7.8e-35
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 10  MAILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCTFIPGTNGPG 69
           MAILLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 1   MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 60

Query: 70  CPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           CPLKERHY A RST+  STHRRHAAP RVV+ALV
Sbjct: 61  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of ClCG05G004533 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 12  ILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71
           +LLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP
Sbjct: 4   LLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 63

Query: 72  LKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           LKERHY A+ STQ  STHRR+AAP RVV+ LV
Sbjct: 64  LKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of ClCG05G004533 vs. NCBI nr
Match: KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 70/96 (72.92%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 12  ILLLLQLQPNLAGRTLHEKPLMVRGTE------LKLQSLQRVSVPPSGPSGCTFIPGTNG 71
           IL+LLQL PN AGRTL EKP MVR  E      LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 4   ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63

Query: 72  PGCPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           PGCPL+ RHYA + S Q  ST RR+A PVRVVEAL+
Sbjct: 64  PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99

[Close]

BLAST of ClCG05G004533 vs. NCBI nr
Match: KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 18 LQPNLAGRTLHEKPLMVRGTE----LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 77
          L PN+AGRTLHE P MVR TE    LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71

Query: 78 HYAADRSTQHLSTH 88
          HY  + ST+  S H
Sbjct: 72 HYTINHSTRRPSAH 85

[Close]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKFLYITLAMAILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCT 60
           MKFL+  LAMAILLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCT
Sbjct: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60

Query: 61  FIPGTNGPGCPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           FIPGTNGPGCPLKERHY A RST+  STHRRHAAP RVV+ALV
Sbjct: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-35
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 10  MAILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCTFIPGTNGPG 69
           MAILLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 1   MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 60

Query: 70  CPLKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           CPLKERHY A RST+  STHRRHAAP RVV+ALV
Sbjct: 61  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 12  ILLLLQLQPNLAGRTLHEKPLMVRGTE--LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71
           +LLLLQLQPNLAGRTLHEKP MVR  E  LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP
Sbjct: 4   LLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 63

Query: 72  LKERHYAADRSTQHLSTHRRHAAPVRVVEALV 102
           LKERHY A+ STQ  STHRR+AAP RVV+ LV
Sbjct: 64  LKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL
Match: A0A5N6R1J5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 10 MAILLLLQLQPNLAGRTLHEKPLMVRGTELKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 69
          + +L LL +Q   A R LH +       +++LQSLQR +VPPSG SGCT+IPGT GPGCP
Sbjct: 2  LLLLFLLHVQLYEASRPLHAE------EDVRLQSLQRGNVPPSGASGCTYIPGTGGPGCP 61

Query: 70 LKERHYAAD 79
          +KE HYA D
Sbjct: 62 VKEMHYAGD 64

[Close]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL
Match: A0A5N6QYI5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MKFLYITLAMAILL-LLQLQPNLAGRTLHEKPLMVRGTELKLQSLQRVSVPPSGPSGCTF 60
          M+ L I LAM +LL LL +Q   A R LH +       +++LQSLQR  VPPSG SGCT+
Sbjct: 1  MRPLNIVLAMLLLLFLLHVQLYEASRPLHAE------EDVRLQSLQRGDVPPSGASGCTY 60

Query: 61 IPGTNGPGCPLKERHYAAD 79
          IPGT GPGCP+KE +YA D
Sbjct: 61 IPGTGGPGCPVKEMNYAGD 73

The following BLAST results are available for this feature:

BLAST of ClCG05G004533 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17267.1	1.3e-37	85.44	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KAA0049291.1	7.8e-35	87.23	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KGN56901.1	2.1e-32	83.70	hypothetical protein Csa_009866 [Cucumis sativus]	[more]
KAG6597386.1	1.7e-26	72.92	hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018772.1	2.9e-21	74.32	hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of ClCG05G004533 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G004533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZY7	6.2e-38	85.44	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U6N3	3.8e-35	87.23	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LA00	1.0e-32	83.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1	[more]
A0A5N6R1J5	1.1e-10	55.07	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1	[more]
A0A5N6QYI5	1.4e-10	55.70	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1	[more]

BLAST of ClCG05G004533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF5	TRANSMEMBRANE PROTEIN	coord: 4..96
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G004533.1	ClCG05G004533.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane