ClCG05G004125 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G004125
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein NRT1/ PTR FAMILY 5.2-like
Location	CG_Chr05: 3776108 .. 3776515 (-)
RNA-Seq Expression	ClCG05G004125
Synteny	ClCG05G004125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTCCATTAATGGCGGTTACTGCAACAGATCAAGAAAGTGTGGTCGACGACTAAACGAAAGATGGAACCGTCCATCTCAAACACAGACCCCTCCATCGATCCAAAACTGGCACTTTGAAAGCCTGTTCCTTCATCATCGGTATAATATCTAATTCAAAACTCTCAATTTGTCGACAACAATAATTATGTACGTGTATTTGGATTTACCGTGTTATGAATTGGTGGAAAGGATTATGTTCAATGGGATTGCTGCTAATTTGATTATATATTTGACGACCAAGCTCCATCAAGGCACTGTCACTGCCTCTAACAATCTCACCAATTGGAATGGAACTGTTTGGATTATGCCAATCTTCCGAGCTTATATCCTGATGCTCATCTCGCCCGCTATCGGACCTTTTTGA

mRNA sequence

ATGCACTCCATTAATGGCGGTTACTGCAACAGATCAAGAAAGTGTGGTCGACGACTAAACGAAAGATGGAACCGTCCATCTCAAACACAGACCCCTCCATCGATCCAAAACTGGCACTTTGAAAGCCTGTTCCTTCATCATCGGATTATGTTCAATGGGATTGCTGCTAATTTGATTATATATTTGACGACCAAGCTCCATCAAGGCACTGTCACTGCCTCTAACAATCTCACCAATTGGAATGGAACTGTTTGGATTATGCCAATCTTCCGAGCTTATATCCTGATGCTCATCTCGCCCGCTATCGGACCTTTTTGA

Coding sequence (CDS)

ATGCACTCCATTAATGGCGGTTACTGCAACAGATCAAGAAAGTGTGGTCGACGACTAAACGAAAGATGGAACCGTCCATCTCAAACACAGACCCCTCCATCGATCCAAAACTGGCACTTTGAAAGCCTGTTCCTTCATCATCGGATTATGTTCAATGGGATTGCTGCTAATTTGATTATATATTTGACGACCAAGCTCCATCAAGGCACTGTCACTGCCTCTAACAATCTCACCAATTGGAATGGAACTGTTTGGATTATGCCAATCTTCCGAGCTTATATCCTGATGCTCATCTCGCCCGCTATCGGACCTTTTTGA

Protein sequence

MHSINGGYCNRSRKCGRRLNERWNRPSQTQTPPSIQNWHFESLFLHHRIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYILMLISPAIGPF

Homology

[Close]

BLAST of ClCG05G004125 vs. NCBI nr
Match: XP_022924431.1 (protein NRT1/ PTR FAMILY 5.2-like [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+MFNGIAANLIIYLTTKL+QGTVTASNN+TNW GTVWI PIF AY+
Sbjct: 51 RMMFNGIAANLIIYLTTKLNQGTVTASNNVTNWTGTVWITPIFGAYV 97

[Close]

BLAST of ClCG05G004125 vs. NCBI nr
Match: KAG6582408.1 (Protein NRT1/ PTR FAMILY 5.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 48  RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
           R+MFNGIAANLIIYLTTKL+QGTVTASNN+TNW GTVWI PIF AY+
Sbjct: 657 RMMFNGIAANLIIYLTTKLNQGTVTASNNVTNWTGTVWITPIFGAYV 703

[Close]

BLAST of ClCG05G004125 vs. NCBI nr
Match: XP_031737789.1 (protein NRT1/ PTR FAMILY 5.2-like isoform X1 [Cucumis sativus] >KAE8650326.1 hypothetical protein Csa_011590 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 45 LHHRIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          L  R+MFNGIAANLIIYLTTKL+QGT+TASNN+TNW GTVWIMPI  AY+
Sbjct: 50 LIERMMFNGIAANLIIYLTTKLNQGTLTASNNVTNWTGTVWIMPILGAYV 99

[Close]

BLAST of ClCG05G004125 vs. NCBI nr
Match: XP_022979584.1 (protein NRT1/ PTR FAMILY 5.2-like [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 49 IMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          +MFNGIAANLIIYLTTKL+QGTVTASNN+TNW GTVWI PIF AY+
Sbjct: 1  MMFNGIAANLIIYLTTKLNQGTVTASNNVTNWTGTVWITPIFGAYV 46

[Close]

BLAST of ClCG05G004125 vs. NCBI nr
Match: XP_011650916.1 (protein NRT1/ PTR FAMILY 5.2 [Cucumis sativus] >KAE8650325.1 hypothetical protein Csa_009670 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-13
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 45  LHHRIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
           L  RI+F G++ANL IYLTTKLHQG VTASNN+TNWNG +WIMPIF AYI
Sbjct: 53  LLERIVFQGVSANLFIYLTTKLHQGIVTASNNVTNWNGAIWIMPIFGAYI 102

[Close]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot
Match: Q9FNL8 (Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + GI++NL+IY+TTKLHQGTV +SNN+TNW GT W+ PI  AY+
Sbjct: 45 RMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYV 91

[Close]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot
Match: Q9FNL7 (Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + GI++NL IY+TTKLHQGTV +SNN+TNW GT W+ PI  AY+
Sbjct: 45 RMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYV 91

[Close]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot
Match: Q8VZR7 (Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ F GIA+NL+ YLT +LH+ T+++  N+ NW+G VWI PI  AYI
Sbjct: 42 RMAFYGIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYI 88

[Close]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot
Match: P46032 (Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 48  RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
           R+ + GIA NLI YLTTKLHQG V+A+ N+T W GT ++ P+  A +
Sbjct: 59  RLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVL 105

[Close]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot
Match: Q9M390 (Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-07
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + G+  NL+ YL ++L+QG  TA+NN+TNW+GT +I P+  A+I
Sbjct: 42 RLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFI 88

[Close]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL
Match: A0A6J1E9F4 (protein NRT1/ PTR FAMILY 5.2-like OS=Cucurbita moschata OX=3662 GN=LOC111431936 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+MFNGIAANLIIYLTTKL+QGTVTASNN+TNW GTVWI PIF AY+
Sbjct: 51 RMMFNGIAANLIIYLTTKLNQGTVTASNNVTNWTGTVWITPIFGAYV 97

[Close]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL
Match: A0A0A0L4Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134760 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 45 LHHRIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          L  R+MFNGIAANLIIYLTTKL+QGT+TASNN+TNW GTVWIMPI  AY+
Sbjct: 50 LIERMMFNGIAANLIIYLTTKLNQGTLTASNNVTNWTGTVWIMPILGAYV 99

[Close]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL
Match: A0A6J1IX09 (protein NRT1/ PTR FAMILY 5.2-like OS=Cucurbita maxima OX=3661 GN=LOC111479266 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 49 IMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          +MFNGIAANLIIYLTTKL+QGTVTASNN+TNW GTVWI PIF AY+
Sbjct: 1  MMFNGIAANLIIYLTTKLNQGTVTASNNVTNWTGTVWITPIFGAYV 46

[Close]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL
Match: A0A0A0L9Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134750 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 45 LHHRIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          L  RI+F G++ANL IYLTTKLHQG VTASNN+TNWNG +WIMPIF AYI
Sbjct: 48 LLERIVFQGVSANLFIYLTTKLHQGIVTASNNVTNWNGAIWIMPIFGAYI 97

[Close]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL
Match: A0A6J1CQA1 (protein NRT1/ PTR FAMILY 5.2-like OS=Momordica charantia OX=3673 GN=LOC111013596 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.4e-13
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+MFNGI+ANLIIYLTTKL+QGTVTASNN+TNW+GT+WI P+  AYI
Sbjct: 52 RMMFNGISANLIIYLTTKLNQGTVTASNNVTNWSGTLWITPVLGAYI 98

[Close]

BLAST of ClCG05G004125 vs. TAIR 10
Match: AT5G46040.1 (Major facilitator superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + GI++NL+IY+TTKLHQGTV +SNN+TNW GT W+ PI  AY+
Sbjct: 45 RMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYV 91

[Close]

BLAST of ClCG05G004125 vs. TAIR 10
Match: AT5G46050.1 (peptide transporter 3 )

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-12
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + GI++NL IY+TTKLHQGTV +SNN+TNW GT W+ PI  AY+
Sbjct: 45 RMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYV 91

[Close]

BLAST of ClCG05G004125 vs. TAIR 10
Match: AT2G40460.1 (Major facilitator superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ F GIA+NL+ YLT +LH+ T+++  N+ NW+G VWI PI  AYI
Sbjct: 42 RMAFYGIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYI 88

[Close]

BLAST of ClCG05G004125 vs. TAIR 10
Match: AT2G02040.1 (peptide transporter 2 )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 48  RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
           R+ + GIA NLI YLTTKLHQG V+A+ N+T W GT ++ P+  A +
Sbjct: 59  RLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVL 105

[Close]

BLAST of ClCG05G004125 vs. TAIR 10
Match: AT3G54140.1 (peptide transporter 1 )

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 48 RIMFNGIAANLIIYLTTKLHQGTVTASNNLTNWNGTVWIMPIFRAYI 95
          R+ + G+  NL+ YL ++L+QG  TA+NN+TNW+GT +I P+  A+I
Sbjct: 42 RLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFI 88

The following BLAST results are available for this feature:

BLAST of ClCG05G004125 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924431.1	1.0e-13	85.11	protein NRT1/ PTR FAMILY 5.2-like [Cucurbita moschata]	[more]
KAG6582408.1	1.0e-13	85.11	Protein NRT1/ PTR FAMILY 5.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031737789.1	2.3e-13	80.00	protein NRT1/ PTR FAMILY 5.2-like isoform X1 [Cucumis sativus] >KAE8650326.1 hyp...	[more]
XP_022979584.1	3.9e-13	84.78	protein NRT1/ PTR FAMILY 5.2-like [Cucurbita maxima]	[more]
XP_011650916.1	6.6e-13	76.00	protein NRT1/ PTR FAMILY 5.2 [Cucumis sativus] >KAE8650325.1 hypothetical protei...	[more]

BLAST of ClCG05G004125 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNL8	2.2e-11	61.70	Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1	[more]
Q9FNL7	4.9e-11	61.70	Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1	[more]
Q8VZR7	3.9e-08	53.19	Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2	[more]
P46032	6.7e-08	53.19	Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1	[more]
Q9M390	7.4e-07	46.81	Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1	[more]

BLAST of ClCG05G004125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9F4	5.0e-14	85.11	protein NRT1/ PTR FAMILY 5.2-like OS=Cucurbita moschata OX=3662 GN=LOC111431936 ...	[more]
A0A0A0L4Z4	1.1e-13	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134760 PE=3 SV=1	[more]
A0A6J1IX09	1.9e-13	84.78	protein NRT1/ PTR FAMILY 5.2-like OS=Cucurbita maxima OX=3661 GN=LOC111479266 PE...	[more]
A0A0A0L9Q0	3.2e-13	76.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134750 PE=3 SV=1	[more]
A0A6J1CQA1	9.4e-13	78.72	protein NRT1/ PTR FAMILY 5.2-like OS=Momordica charantia OX=3673 GN=LOC111013596...	[more]

BLAST of ClCG05G004125 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46040.1	1.6e-12	61.70	Major facilitator superfamily protein	[more]
AT5G46050.1	3.5e-12	61.70	peptide transporter 3	[more]
AT2G40460.1	2.8e-09	53.19	Major facilitator superfamily protein	[more]
AT2G02040.1	4.8e-09	53.19	peptide transporter 2	[more]
AT3G54140.1	5.3e-08	46.81	peptide transporter 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036259	MFS transporter superfamily	GENE3D	1.20.1250.20	MFS general substrate transporter like domains	coord: 19..95 e-value: 1.9E-11 score: 44.8
None	No IPR available	PANTHER	PTHR11654:SF73	PROTEIN NRT1/ PTR FAMILY 5.2-LIKE	coord: 45..94
IPR000109	Proton-dependent oligopeptide transporter family	PANTHER	PTHR11654	OLIGOPEPTIDE TRANSPORTER-RELATED	coord: 45..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G004125.1	ClCG05G004125.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035442	dipeptide transmembrane transport
biological_process	GO:0042939	tripeptide transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0071916	dipeptide transmembrane transporter activity
molecular_function	GO:0042937	tripeptide transmembrane transporter activity
molecular_function	GO:0022857	transmembrane transporter activity