ClCG05G002880 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G002880
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic
LocationCG_Chr05: 2771660 .. 2772136 (+)
RNA-Seq ExpressionClCG05G002880
SyntenyClCG05G002880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCACTAATTGTGGCCTTCTATCGCACGTCCTTCTGGTATTTTCACAAAGAATTGAAGGTTTGGTTTTCTAATTCGTTTAAGCAATTTTTTTGTGAAGGAAAAAAGTCCAACAGGACTATATTTTCCTCTGACATTGTTTAGATTGCAATTGATTTTGCAAATTTCAGATGTATGATCTAATGGAGTCTTTACACTTCTAGGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

mRNA sequence

ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

Coding sequence (CDS)

ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

Protein sequence

MHSLIVAFYRTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSSVYVSTEGHGERKGHRHKAMFYQKVSIVVI
Homology
BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_038875801.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 5.3e-36
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           WVGL+GQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSP+PFSS
Sbjct: 92  WVGLIGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPNPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           VYVSTE HGERKG RHKAMFY K+
Sbjct: 152 VYVSTEAHGERKGCRHKAMFYHKL 175

BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_022146920.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           WVGLVGQFRPKKLISSIKAELSA DSLELPVLKDVA QFLDKSLYTYGLCSQFSPSPFSS
Sbjct: 92  WVGLVGQFRPKKLISSIKAELSAVDSLELPVLKDVALQFLDKSLYTYGLCSQFSPSPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           ++ STE HGE+KG RHKAMFY K+
Sbjct: 152 LFFSTEEHGEKKGRRHKAMFYHKL 175

BLAST of ClCG05G002880 vs. NCBI nr
Match: KAA0049109.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa] >TYK17454.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 10  RTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPF 69
           R WVGLVGQFRPKKLIS +KA+LS  D  EL  LKDVAR  LDKS YTYG+CSQFSPSPF
Sbjct: 90  RWWVGLVGQFRPKKLISLLKAKLSDEDGFELSDLKDVARLLLDKSHYTYGICSQFSPSPF 149

Query: 70  SSVYVSTEGHGERKGHRHKAMFYQKV 96
           SSVYVSTE HGERKG RHKAMFY ++
Sbjct: 150 SSVYVSTEKHGERKGRRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_008438274.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 10  RTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPF 69
           R WVGLVGQFRPKKLIS +KA+LS  D  EL  LKDVAR  LDKS YTYG+CSQFSPSPF
Sbjct: 90  RWWVGLVGQFRPKKLISLLKAKLSDEDGFELSDLKDVARLLLDKSHYTYGICSQFSPSPF 149

Query: 70  SSVYVSTEGHGERKGHRHKAMFYQKV 96
           SSVYVSTE HGERKG RHKAMFY ++
Sbjct: 150 SSVYVSTEKHGERKGRRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_004133963.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic isoform X1 [Cucumis sativus] >KGN56678.1 hypothetical protein Csa_010052 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W GLVGQFRPKKLISSIKA++SA + LEL  LKD+A  FLDKSLYTYG+CSQFS  PFSS
Sbjct: 92  WAGLVGQFRPKKLISSIKAQISAVEQLELSDLKDIASLFLDKSLYTYGICSQFSTGPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           VYVSTE  GERKGHRHKAMFY ++
Sbjct: 152 VYVSTEKLGERKGHRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A6J1CYP7 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016004 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.0e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           WVGLVGQFRPKKLISSIKAELSA DSLELPVLKDVA QFLDKSLYTYGLCSQFSPSPFSS
Sbjct: 92  WVGLVGQFRPKKLISSIKAELSAVDSLELPVLKDVALQFLDKSLYTYGLCSQFSPSPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           ++ STE HGE+KG RHKAMFY K+
Sbjct: 152 LFFSTEEHGEKKGRRHKAMFYHKL 175

BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A5D3D2D9 (Protein TRIGALACTOSYLDIACYLGLYCEROL 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003180 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 10  RTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPF 69
           R WVGLVGQFRPKKLIS +KA+LS  D  EL  LKDVAR  LDKS YTYG+CSQFSPSPF
Sbjct: 90  RWWVGLVGQFRPKKLISLLKAKLSDEDGFELSDLKDVARLLLDKSHYTYGICSQFSPSPF 149

Query: 70  SSVYVSTEGHGERKGHRHKAMFYQKV 96
           SSVYVSTE HGERKG RHKAMFY ++
Sbjct: 150 SSVYVSTEKHGERKGRRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A1S3AWM5 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483435 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 10  RTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPF 69
           R WVGLVGQFRPKKLIS +KA+LS  D  EL  LKDVAR  LDKS YTYG+CSQFSPSPF
Sbjct: 90  RWWVGLVGQFRPKKLISLLKAKLSDEDGFELSDLKDVARLLLDKSHYTYGICSQFSPSPF 149

Query: 70  SSVYVSTEGHGERKGHRHKAMFYQKV 96
           SSVYVSTE HGERKG RHKAMFY ++
Sbjct: 150 SSVYVSTEKHGERKGRRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A0A0L4I9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128880 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W GLVGQFRPKKLISSIKA++SA + LEL  LKD+A  FLDKSLYTYG+CSQFS  PFSS
Sbjct: 92  WAGLVGQFRPKKLISSIKAQISAVEQLELSDLKDIASLFLDKSLYTYGICSQFSTGPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           VYVSTE  GERKGHRHKAMFY ++
Sbjct: 152 VYVSTEKLGERKGHRHKAMFYHRL 175

BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A6J1IIJ0 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473485 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1   MHSLIVAFYRT--WVGLVGQFRPKKLISSIKAEL-SAADSLE-LPVLKDVARQFLDKSLY 60
           + SL++ F     WVGLVGQFRPKK+IS+IK +L S  D+LE LP LKDVA  FLDK+LY
Sbjct: 79  LQSLLLKFPAADWWVGLVGQFRPKKVISNIKEDLISDLDNLELLPALKDVATMFLDKTLY 138

Query: 61  TYGLCSQFSPSPFSSVYVSTEGHGERKGHRHKAMFYQKV 96
           +YGLCSQFSP+PFSSV+ STE HG+RKG RHKAMFY ++
Sbjct: 139 SYGLCSQFSPTPFSSVFASTEEHGDRKGRRHKAMFYHRL 177

BLAST of ClCG05G002880 vs. TAIR 10
Match: AT2G44640.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+GLVGQF+PKKL + IKA++S A+  +L V+KD A+  +DKSLY+ GL +Q +    SS
Sbjct: 92  WLGLVGQFKPKKLFADIKADISNAEEWDLQVVKDTAKHIVDKSLYSIGLWTQIALGTSSS 151

Query: 72  VYVSTEGHGERKGHRHKAM 91
           + +STE  G++ G R+K M
Sbjct: 152 LLLSTERLGDKNGLRNKLM 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875801.15.3e-3692.86protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida][more]
XP_022146920.11.4e-3388.10protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Momordica charantia][more]
KAA0049109.18.2e-2977.91protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa] >TYK17454.1 pro... [more]
XP_008438274.18.2e-2977.91PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis melo][more]
XP_004133963.11.8e-2877.38protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic isoform X1 [Cucumis sativus... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CYP77.0e-3488.10protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Momordica charantia OX=3... [more]
A0A5D3D2D94.0e-2977.91Protein TRIGALACTOSYLDIACYLGLYCEROL 4 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3AWM54.0e-2977.91protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucumis melo OX=3656 GN=... [more]
A0A0A0L4I98.9e-2977.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128880 PE=4 SV=1[more]
A0A6J1IIJ01.9e-2666.67protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like isoform X1 OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT2G44640.15.0e-1649.37FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34954:SF3EXPRESSED PROTEINcoord: 9..95
IPR044160Protein TRIGALACTOSYLDIACYLGLYCEROL 4-likePANTHERPTHR34954EXPRESSED PROTEINcoord: 9..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G002880.1ClCG05G002880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034196 acylglycerol transport
biological_process GO:1990052 ER to chloroplast lipid transport
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0070300 phosphatidic acid binding