ClCG05G002880 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATTCACTAATTGTGGCCTTCTATCGCACGTCCTTCTGGTATTTTCACAAAGAATTGAAGGTTTGGTTTTCTAATTCGTTTAAGCAATTTTTTTGTGAAGGAAAAAAGTCCAACAGGACTATATTTTCCTCTGACATTGTTTAGATTGCAATTGATTTTGCAAATTTCAGATGTATGATCTAATGGAGTCTTTACACTTCTAGGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA MHSLIVAFYRTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSSVYVSTEGHGERKGHRHKAMFYQKVSIVVI Homology
BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_038875801.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Benincasa hispida]) HSP 1 Score: 161.0 bits (406), Expect = 5.3e-36 Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_022146920.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Momordica charantia]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of ClCG05G002880 vs. NCBI nr
Match: KAA0049109.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa] >TYK17454.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa]) HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29 Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_008438274.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis melo]) HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29 Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of ClCG05G002880 vs. NCBI nr
Match: XP_004133963.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic isoform X1 [Cucumis sativus] >KGN56678.1 hypothetical protein Csa_010052 [Cucumis sativus]) HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28 Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0
BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A6J1CYP7 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016004 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 7.0e-34 Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A5D3D2D9 (Protein TRIGALACTOSYLDIACYLGLYCEROL 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003180 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29 Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A1S3AWM5 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483435 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29 Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A0A0L4I9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128880 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29 Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0
BLAST of ClCG05G002880 vs. ExPASy TrEMBL
Match: A0A6J1IIJ0 (protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473485 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26 Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0
BLAST of ClCG05G002880 vs. TAIR 10
Match: AT2G44640.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16 Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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