ClCG05G001610 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G001610
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Mediator of RNA polymerase II transcription subunit 2-like
Location	CG_Chr05: 1603820 .. 1604711 (+)
RNA-Seq Expression	ClCG05G001610
Synteny	ClCG05G001610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTGGAGACGGGTTAATGAATGACAGAATGGTCCGACCCGGTTCAATATAAATTGCTTCATCACAGTTTCTAACTTTATTCGGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGTAACTTCTAATAATGGATTAATTTTTCGAATAAACTGTTTGTACGTTCCAGTTGATTCACTTTCGTGGTTCTTATACTACTGTTCTTACTTGGGCGAATTGATTAGGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTAAGTCTCCCTCTTTCTCTCCATGGAATCGAGAAAATCTTCATTGATTAAAAAATATTGAAGTTAGGGGCAGAGATTGCTTATTGTTTCTGTTTGGTTTACACTTCATCTGGGAATTTTCTCATACGGGTAATGTTCTAGTTTTCACTTATTCCAATAGCATAACCCACGAGCATTTTGTCCACTAAGATTGAGAAGTTTAATGACTTCCTACTGCATGATTTTTTTGGATAAGATTGAGAAGTTTAACGACTTCCTACTGCATGATTTTTCTGGATAATTAGGCAATACTCGATGGATTTGGAACAAGTTCTGTTTGCTGTTCGTGTTCTTTTAATACCATTCGAAAGTCTTATGATTTTCGTATAATTATGTTCTTAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

mRNA sequence

ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

Coding sequence (CDS)

ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

Protein sequence

MSLETGFKKTVIFAISASKFPAAGRNNMSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK

Homology

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: KAA0048973.1 (mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-28
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKASQAM+LDK
Sbjct: 61  VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: KGN56523.1 (hypothetical protein Csa_010072 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTA AKAKASQAMELDK
Sbjct: 61  VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: XP_022941890.1 (uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 uncharacterized protein LOC111473288 [Cucurbita maxima] >XP_023540792.1 uncharacterized protein LOC111801059 [Cucurbita pepo subsp. pepo] >KAG6597121.1 hypothetical protein SDJN03_10301, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028585.1 hypothetical protein SDJN02_09766 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKK
Sbjct: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKA+QAMELDK
Sbjct: 61  VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: XP_022147302.1 (uncharacterized protein LOC111016287 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 73/81 (90.12%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGGGGFQVGKKK
Sbjct: 1   MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKA+QAMELD+
Sbjct: 61  VKTKLTAAAKAKAAQAMELDQ 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: XP_030457135.1 (uncharacterized protein LOC115678006 [Syzygium oleosum])

HSP 1 Score: 125.2 bits (313), Expect = 3.5e-25
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKN+LSRRKKQYEFDL+REK EKEKAAKKLQAKKNKMKVDGSGKKKKG GGFQVGK+K
Sbjct: 1   MSKKNSLSRRKKQYEFDLRREKAEKEKAAKKLQAKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           +KTKLTA AKAKA+QAMELDK
Sbjct: 61  LKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. ExPASy TrEMBL
Match: A0A5A7TZC8 (Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001950 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKASQAM+LDK
Sbjct: 61  VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of ClCG05G001610 vs. ExPASy TrEMBL
Match: A0A0A0L493 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTA AKAKASQAMELDK
Sbjct: 61  VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. ExPASy TrEMBL
Match: A0A6J1IED7 (uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.9e-27
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKK
Sbjct: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKA+QAMELDK
Sbjct: 61  VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. ExPASy TrEMBL
Match: A0A6J1FV29 (uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC111447114 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.9e-27
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKK
Sbjct: 1   MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKA+QAMELDK
Sbjct: 61  VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. ExPASy TrEMBL
Match: A0A6J1D208 (uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016287 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.6e-26
Identity = 73/81 (90.12%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGGGGFQVGKKK
Sbjct: 1   MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELDK 109
           VKTKLTAAAKAKA+QAMELD+
Sbjct: 61  VKTKLTAAAKAKAAQAMELDQ 81

[Close]

BLAST of ClCG05G001610 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 9.5e-21
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 28  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 87
           MSKKNNL++RKKQ+E++LQ+EK+ ++K  KKL A KNKMKVDGSGKKKK  GGF VGKKK
Sbjct: 1   MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 88  VKTKLTAAAKAKASQAMELD 108
           +KTKLT  AKAKA+QAMELD
Sbjct: 61  LKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:

BLAST of ClCG05G001610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048973.1	9.8e-28	96.30	mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. ma...	[more]
KGN56523.1	1.3e-27	96.30	hypothetical protein Csa_010072 [Cucumis sativus]	[more]
XP_022941890.1	1.4e-26	93.83	uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 unchar...	[more]
XP_022147302.1	1.6e-25	90.12	uncharacterized protein LOC111016287 [Momordica charantia]	[more]
XP_030457135.1	3.5e-25	90.12	uncharacterized protein LOC115678006 [Syzygium oleosum]	[more]

BLAST of ClCG05G001610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G001610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZC8	4.8e-28	96.30	Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. ...	[more]
A0A0A0L493	6.2e-28	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1	[more]
A0A6J1IED7	6.9e-27	93.83	uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288...	[more]
A0A6J1FV29	6.9e-27	93.83	uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1D208	7.6e-26	90.12	uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of ClCG05G001610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45860.1	9.5e-21	73.75	unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74
None	No IPR available	PANTHER	PTHR36745	OS02G0824400 PROTEIN	coord: 28..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G001610.2	ClCG05G001610.2	mRNA