ClCG04G012793 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G012793
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	CG_Chr04: 27623888 .. 27625164 (+)
RNA-Seq Expression	ClCG04G012793
Synteny	ClCG04G012793

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCTTCAGTGTAATCAGCAATAGAATGATCCCTTTGCCTACATTGTTGGTATGTGCTATAAAGGATTTGCTGGTAATTCATAGGAAGGAAACGCTTTTTCATTAACCTTAGCATCTTTGGCCAGCTGCGGATGGGAGGCTTACCATAATACCTCCTGTTGTTCTCAATTTGTTCCCACCATGCTGAAGCCCCACTTTGAAGTTTATAAGCTACCAGTCGCACCTTCTTCTTCTCGGCACTGTTGGTGTAAGCAAAGAAGTTTTCCACATTCTTAACCCAATCAAGGAATCTTTCAATATCCATTCGGCCATTGAAAGGGGGAAGATCCATTTTAATCTTGTAATCCGGTGGATCTTGAACTTCTTGATCTCTTGGAGGTCTTCTTGGGTTTCTTGGAGGCCATTGTGAATTCGGATTTGTTTGAAGAATGTTGTGTCAGAATTTACTCTCAAGGTTTATCCCATATCAGGTCAGATCATCATATCCCCAAGAATAATTCCTTTTCCCAAGCGGAATTTAAAATCCCTGGCTCTAACTCACCCTTTATTCGAGGTATCCCAAGCCCTGATAATCGTGGGGTGCAAATCAACAAAGAAGAAGATGAAGATTCAATTGTCAGCGCTAGTAGTGATGATTTGGACTACTTAGGCTCTGAGGAAGATCTGGAAGAGGAGGCCCTTTTATCCAACAATGGAAGTGCTTTGAAGAATCTGTTCCAATCTATGGAAAATCAAGACCTTGACATTGTGAAAGTTATAAACTGCAAACTGATTGGGAAGGATATAATCCCTCAAAATCTAATCTCAATTGTTGAGGATTGTGACTTGGTCCTTGGGTGAGATCTCATTGTCATTTCAGTCATAATGAAGATATTGGCATGGAACACTAGAGGCTTGGGAGATAAATCAAAAAGAGTGGTTATTAAATGTAGTTTAAAGCGACTGAATCTGGATTTAGTTTTAATACAAGAAACAAAGAAGGATAGTCTTGACATCAATACTATCAAAGAACTATGGAGCTCCAAGGATATTGGATGGGCGTTTGTGGAGGCAATTGGAAGGTCGAGAGGTATGTTAACCATGTGGGATGAAAGTAAGATTTCAGTCATTGAAATGCTAAAAGGTGGATACTCACTTTCAGTCAAATGCCTTATAATCAACAAAAAGAGCTGCTGGATAACAAATGTATATGGCCCTAATGATTACCGCGAGAGGAAGCATCTGTGGGCCGAACTGTCTTCTTTGGTGGCATACTGTGTAGAGGCGTGGTGA

mRNA sequence

ATGAAATTCTTCAGTGTAATCAGCAATAGAATGATCCCTTTGCCTACATTGTTGGTATGTGCTATAAAGGATTTGCTGGTCTTCTTGGGTTTCTTGGAGGCCATTGTGAATTCGGATTTGTTTGAAGAATGTTGTGTCAGAATTTACTCTCAAGGTTTATCCCATATCAGGTCAGATCATCATATCCCCAAGAATAATTCCTTTTCCCAAGCGGAATTTAAAATCCCTGGCTCTAACTCACCCTTTATTCGAGGTATCCCAAGCCCTGATAATCGTGGGGTGCAAATCAACAAAGAAGAAGATGAAGATTCAATTGTCAGCGCTAGTAGTGATGATTTGGACTACTTAGGCTCTGAGGAAGATCTGGAAGAGGAGGCCCTTTTATCCAACAATGGAAGTGCTTTGAAGAATCTGTTCCAATCTATGGAAAATCAAGACCTTGACATTGTGAAAGTTATAAACTGCAAACTGATTGGGAAGGATATAATCCCTCAAAATCTAATCTCAATTGTTGAGGATTGTGACTTGGTCCTTGGTTTAAAGCGACTGAATCTGGATTTAGTTTTAATACAAGAAACAAAGAAGGATAGTCTTGACATCAATACTATCAAAGAACTATGGAGCTCCAAGGATATTGGATGGGCGTTTGTGGAGGCAATTGGAAGGTCGAGAGGTATGTTAACCATGTGGGATGAAAGTAAGATTTCAGTCATTGAAATGCTAAAAGGTGGATACTCACTTTCAGTCAAATGCCTTATAATCAACAAAAAGAGCTGCTGGATAACAAATGTATATGGCCCTAATGATTACCGCGAGAGGAAGCATCTGTGGGCCGAACTGTCTTCTTTGGTGGCATACTGTGTAGAGGCGTGGTGA

Coding sequence (CDS)

ATGAAATTCTTCAGTGTAATCAGCAATAGAATGATCCCTTTGCCTACATTGTTGGTATGTGCTATAAAGGATTTGCTGGTCTTCTTGGGTTTCTTGGAGGCCATTGTGAATTCGGATTTGTTTGAAGAATGTTGTGTCAGAATTTACTCTCAAGGTTTATCCCATATCAGGTCAGATCATCATATCCCCAAGAATAATTCCTTTTCCCAAGCGGAATTTAAAATCCCTGGCTCTAACTCACCCTTTATTCGAGGTATCCCAAGCCCTGATAATCGTGGGGTGCAAATCAACAAAGAAGAAGATGAAGATTCAATTGTCAGCGCTAGTAGTGATGATTTGGACTACTTAGGCTCTGAGGAAGATCTGGAAGAGGAGGCCCTTTTATCCAACAATGGAAGTGCTTTGAAGAATCTGTTCCAATCTATGGAAAATCAAGACCTTGACATTGTGAAAGTTATAAACTGCAAACTGATTGGGAAGGATATAATCCCTCAAAATCTAATCTCAATTGTTGAGGATTGTGACTTGGTCCTTGGTTTAAAGCGACTGAATCTGGATTTAGTTTTAATACAAGAAACAAAGAAGGATAGTCTTGACATCAATACTATCAAAGAACTATGGAGCTCCAAGGATATTGGATGGGCGTTTGTGGAGGCAATTGGAAGGTCGAGAGGTATGTTAACCATGTGGGATGAAAGTAAGATTTCAGTCATTGAAATGCTAAAAGGTGGATACTCACTTTCAGTCAAATGCCTTATAATCAACAAAAAGAGCTGCTGGATAACAAATGTATATGGCCCTAATGATTACCGCGAGAGGAAGCATCTGTGGGCCGAACTGTCTTCTTTGGTGGCATACTGTGTAGAGGCGTGGTGA

Protein sequence

MKFFSVISNRMIPLPTLLVCAIKDLLVFLGFLEAIVNSDLFEECCVRIYSQGLSHIRSDHHIPKNNSFSQAEFKIPGSNSPFIRGIPSPDNRGVQINKEEDEDSIVSASSDDLDYLGSEEDLEEEALLSNNGSALKNLFQSMENQDLDIVKVINCKLIGKDIIPQNLISIVEDCDLVLGLKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIEMLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW

Homology

[Close]

BLAST of ClCG04G012793 vs. NCBI nr
Match: KAA0063088.1 (uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK02044.1 uncharacterized protein E5676_scaffold680G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 7.2e-33
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 180 LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIE 239
           L++++LD+VLIQE+KK+  DI  IK LWSSKD GW   E  G S G+LT+WD SK+ VIE
Sbjct: 228 LEKIHLDIVLIQESKKEEFDIVFIKSLWSSKDNGWELFEPFGHSGGILTLWDMSKLKVIE 287

Query: 240 MLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
            LKGGYSLS+  + + KKSCWITNVYGPND++ER+ +W EL SL  YC +AW
Sbjct: 288 TLKGGYSLSINHITVCKKSCWITNVYGPNDHKERRLVWPELLSLSNYCTKAW 339

[Close]

BLAST of ClCG04G012793 vs. NCBI nr
Match: XP_038876676.1 (uncharacterized protein LOC120069076 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-31
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 180 LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIE 239
           LK++N D+VLIQETKKD ++ + IK LWSSK++G AFVEA G+S G+LT+WD+SKI V  
Sbjct: 24  LKKVNPDIVLIQETKKDRIEGSFIKSLWSSKEVGCAFVEAKGKSGGLLTVWDDSKILVSS 83

Query: 240 MLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
           + K  +SLS+KC  INKK CWITNVYGP DY+ER+ LWAELSSL     + W
Sbjct: 84  ISKDEFSLSIKCQTINKKICWITNVYGPCDYQERRRLWAELSSLAEKLDDPW 135

[Close]

BLAST of ClCG04G012793 vs. NCBI nr
Match: TYJ98683.1 (hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-28
Identity = 62/105 (59.05%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 187 LVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIEMLKGGYS 246
           LV+    +   +DI  IK LWSSKDIGW  VE+ GR  G+LTMWD SKI V+E LKGGYS
Sbjct: 71  LVICYRNQGQEIDIALIKSLWSSKDIGWELVESFGRFGGILTMWDMSKIKVVETLKGGYS 130

Query: 247 LSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
           LS+  +   KKSCWITNVYGP DY ER+ +W  L SL  YC  AW
Sbjct: 131 LSINSITSCKKSCWITNVYGPYDYEERRFVWLVLVSLSGYCTGAW 175

[Close]

BLAST of ClCG04G012793 vs. NCBI nr
Match: KAA0045287.1 (uncharacterized protein E6C27_scaffold316G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-22
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 203 IKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIEMLKGGYSLSVKCLIINKKSCWIT 262
           IK LWS  DIG  F+E+IGRS G+LTMWDES+ISV E++KG ++LSVKC  I KK CWI+
Sbjct: 73  IKALWSLNDIGQDFIESIGRSGGILTMWDESEISVPEVIKGRFALSVKCTTICKKPCWIS 132

Query: 263 NVYGPNDYRERKHLWAELSSLVAYCVEA 291
           NVYGP  ++ERK +W ELS   A C+ A
Sbjct: 133 NVYGPTLHQERKLIWLELSFFAALCLGA 160

[Close]

BLAST of ClCG04G012793 vs. NCBI nr
Match: XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-17
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 180 LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIE 239
           L + N D+V++Q++K  +++ + +K +WSS  +GWA +EA G S G+L +W E  I+V++
Sbjct: 17  LVKFNPDVVILQKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVVD 76

Query: 240 MLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
            ++G +S+S+        S WIT VYGP+ YR R   W ELSSL   C E W
Sbjct: 77  SIQGQFSISIHWKFNAGFSGWITGVYGPSSYRLRDQFWWELSSLYGLCNENW 128

[Close]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL
Match: A0A5A7V639 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00270 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.5e-33
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 180 LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIE 239
           L++++LD+VLIQE+KK+  DI  IK LWSSKD GW   E  G S G+LT+WD SK+ VIE
Sbjct: 228 LEKIHLDIVLIQESKKEEFDIVFIKSLWSSKDNGWELFEPFGHSGGILTLWDMSKLKVIE 287

Query: 240 MLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
            LKGGYSLS+  + + KKSCWITNVYGPND++ER+ +W EL SL  YC +AW
Sbjct: 288 TLKGGYSLSINHITVCKKSCWITNVYGPNDHKERRLVWPELLSLSNYCTKAW 339

[Close]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL
Match: A0A5D3BHE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00120 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 62/105 (59.05%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 187 LVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIEMLKGGYS 246
           LV+    +   +DI  IK LWSSKDIGW  VE+ GR  G+LTMWD SKI V+E LKGGYS
Sbjct: 71  LVICYRNQGQEIDIALIKSLWSSKDIGWELVESFGRFGGILTMWDMSKIKVVETLKGGYS 130

Query: 247 LSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
           LS+  +   KKSCWITNVYGP DY ER+ +W  L SL  YC  AW
Sbjct: 131 LSINSITSCKKSCWITNVYGPYDYEERRFVWLVLVSLSGYCTGAW 175

[Close]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL
Match: A0A5A7TTX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00450 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.5e-23
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 203 IKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIEMLKGGYSLSVKCLIINKKSCWIT 262
           IK LWS  DIG  F+E+IGRS G+LTMWDES+ISV E++KG ++LSVKC  I KK CWI+
Sbjct: 73  IKALWSLNDIGQDFIESIGRSGGILTMWDESEISVPEVIKGRFALSVKCTTICKKPCWIS 132

Query: 263 NVYGPNDYRERKHLWAELSSLVAYCVEA 291
           NVYGP  ++ERK +W ELS   A C+ A
Sbjct: 133 NVYGPTLHQERKLIWLELSFFAALCLGA 160

[Close]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL
Match: A0A1U8B190 (uncharacterized protein LOC104606223 OS=Nelumbo nucifera OX=4432 GN=LOC104606223 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 180 LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISVIE 239
           L+R   D+VL+QE+K   LD   ++  W S+ +GW+   + G S G++T+W E  + V+E
Sbjct: 24  LQREKPDIVLLQESKLMXLDGRWVRSFWRSRGLGWSLAPSWGASGGIVTLWKEDVVEVVE 83

Query: 240 MLKGGYSLSVKCLIINKKSCWI-TNVYGPNDYRERKHLWAELSSL 284
            L G +S+S+KC  +     W+ TNVYGPN YRER  +W EL ++
Sbjct: 84  ELIGRFSVSIKCKNVENGCVWVLTNVYGPNSYRERNEMWEELYAI 128

[Close]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL
Match: A0A803QI00 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 67/234 (28.63%), Postives = 106/234 (45.30%), Query Frame = 0


Query: 97   NKEEDED----SIVSASSDDLDYLGSEEDLE------EEALLSNNGSALKNLFQSMENQD 156
            ++E DED      +  SS+D D  G  ED E       E +L N     K   +    Q+
Sbjct: 801  SEENDEDPKEVEFLDLSSEDEDSEGEGEDTELDVGEDSEDILCNINELWKLEVEDPPRQE 860

Query: 157  LDIVKVINCKLIGKDIIP-QNLISIVEDCDLVLG-------------------------- 216
            L + K+ +   + KD +  + +I  +++ D+ +                           
Sbjct: 861  LGVEKLGDAIEVKKDALSWEKIIDSMDEIDVAISQETEDGDQKGGEEKGSGDKGKRHAIK 920

Query: 217  --LKRLNLDLVLIQETKKDSLDINTIKELWSSKDIGWAFVEAIGRSRGMLTMWDESKISV 276
              + + N DLV++QE K+ S+D   I  +W S+   W  + AIGRS G L +WD   I+V
Sbjct: 921  ATICKANPDLVILQEVKRTSVDRRFIGSIWRSRFKAWIIIPAIGRSGGTLLIWDTRTITV 980

Query: 277  IEMLKGGYSLSVKCLIINKKSCWITNVYGPNDYRERKHLWAELSSLVAYCVEAW 292
            ++ L G +S+SV      K   W + VYGP  Y+ R   W EL+ L A C ++W
Sbjct: 981  LDSLVGEFSISVLIKAEGKDPWWFSGVYGPCSYKLRPAFWDELAGLSAICGDSW 1034

The following BLAST results are available for this feature:

BLAST of ClCG04G012793 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063088.1	7.2e-33	60.71	uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038876676.1	2.3e-31	61.61	uncharacterized protein LOC120069076 [Benincasa hispida]	[more]
TYJ98683.1	5.3e-28	59.05	hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]	[more]
KAA0045287.1	2.0e-22	61.36	uncharacterized protein E6C27_scaffold316G00450 [Cucumis melo var. makuwa]	[more]
XP_031739979.1	1.5e-17	41.07	uncharacterized protein LOC116403332 [Cucumis sativus]	[more]

BLAST of ClCG04G012793 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G012793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V639	3.5e-33	60.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BHE3	2.6e-28	59.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TTX5	9.5e-23	61.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1U8B190	1.0e-16	40.95	uncharacterized protein LOC104606223 OS=Nelumbo nucifera OX=4432 GN=LOC104606223...	[more]
A0A803QI00	1.1e-15	28.63	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of ClCG04G012793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 150..289 e-value: 8.1E-8 score: 34.3
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 180..284
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 182..283
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 182..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G012793.1	ClCG04G012793.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140097	catalytic activity, acting on DNA
molecular_function	GO:0004518	nuclease activity