ClCG04G012030 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G012030
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 26960237 .. 26962877 (+)
RNA-Seq Expression	ClCG04G012030
Synteny	ClCG04G012030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCAAAGTCATCCATGCAATTTGACAAAAGCTCCTCTGAGTCGCCACCATCCTTACATTTCAAGGCTATTTCAGCCTTCTCTGGATCAGCTCCCATTGAAGAAACTATTTCAGCAAACCAGCATAAGGGTTCAAATGAAGGTTGAACGGACGGACAGCCAGTGGTTTTATGACAATTTTGAGCCACAGATGATGAAATAGAAACCAAGGCTTCTGCTGCAATCGTATTGAGGTCCTCCGACAGTTTGCCATCATCTTCAACTGATTCTAGAAAATGTGACTCAACTTGGTTATCACCAGACTCTCCTGTAGTTGAAGAGTCTTTATCCTTTCCAGGACTTACAGGTACCTCAAGTTTCATTTCAGTGGAGCAACAAGGTGTTGCCAAAAATTCTTCATTTATGCATACGTTGAGGTCAATTTGACCTTCCATACAATTTCTAGAAGCCTTGAACAAGGGGCGAGATTCTTCTTTCACAATCTCGAACTTGGAGCCATTACAGAAGCTTCCTTCGAGGGGGCTTACAGTATCAGACCTAATGCCAGGTTTCAACTTCTTAACGCTACAGATATCATCTTCAGCAAGCATTGCATTTTCTATCAACATTTTGGAACTCTCAGTATCTAAAAGATGGTGTCCCATGAGACCTTGTGCAGATTTTGTCAAAGAAGTAGTGGATGATGACAGACTTGAACTTGCAATATCTTTGTCTGGTTGATATGTTTTGCTTCTGTCATAAAAGCTAATCGATTCAGAATAGCCATTGTTAGAGAGTCCATTCTTTCTTACATGGACATCTTGCTCTAAGAAACCGAGAAACTTTGAATTGGCTTTGCCATAGAGATCATGGAAAAGGATCTCCCTGTGGCCAGTAACATCCACTAAATCTACGAATTTACAGCCCGATTCTTCCTCAAAGTTAGGAGGATCGTTTAAATCAACTGAGACCTTGGTTTTCTCTAAGACCGAATCATACTTGGCAAGAAAAGGTTTTCTATCACTAATATGAACAATCTCAGGCATTCTCTTGAGATGACAGCTTGACATTTCAGGCACATTTGTCAATTCATCTTTTACATTCAAGTACTTGCTGTCAGTTGGAAGTTCAAGATCAAACATCCCTTTTCCCAAAATCTTGTTCGTAGATTCTGAAAAATAAGGATTCTTTGAACGGATTCCATTCAGAGGGGAGTCAGAACCTGTTTGAATGTTCTTCCCTAAACTTGAAAGCAATGAGGTCGTTTTTTCACCTGAAATAAATAATTGACTGTATCCAGGGAAGTTATCTGCATCCTGAGCACAAAATGCAGAGACCCGAGACTCATAAAAATCAGACTGAGTTGTCGTGATGCACATATCATGTTTACGTGATTCCCTCTTCATCTCAGCTATAAACTCCTTCTGTCTTTTGTAAAGGCGATGAAGTTCATAAATCTGGACAGTTTATTAATATTTCAGATGAATTTATAAGCTCAGAACTTCGAGTATTAAGAATATCAGATTTCTAAAGATGCAAACCATTGCAAATACACATTAGGATTGGCTAATAATAGTACATGATTCCGAGCCAAAAGATAACTTGCATACCAAGGATATACCTGATCCCTAAAAATCGCTTCTTGCTTGAGCATTATCTGCTTTAGTGCTTCTCGGCCACATTCTACGTACAGACCAGCTGACAATGATGATAATAAACCTTTGGAGCTATGTCCACCGTTCACCATTTTATCCTCACTGATTTGAGGCCATATACAGCCACCAACAACTCCTTTTAGATCCCTACTGAAATAAAAATTTGGATAGTTGCCAGAACCCTGCATATTTGCTCCAATACCAAGAAGTTCCATAAATAATACAAAAGCTTCACTGGATATTCTGGCAGATTAGGACCTGAGGCAAAAAGGACAGGCAAGAATTGATTGGTATCTGATAGACACATGCTAAAGTTTAACAGAATTACCTAATTAACTTCCTGAGTACATCTCAACTGTATTCTCAGATTTTGATCAACTCCAGCTAAAACTTTCTAAGTTCCAACCATTTAAAATTTCAAATTCCACCATTACATTTTTGGCATATATAGTCAATGATAACATTTTCCAAGGCATAAGTTGAGGAGAATCATATACGAAAGTTAAAGAGTCTGCACAAGGATCGAATCCACAAAAGGGACAACTACAGTTAATCAGTTTAAAATCTGCCTCAGGCAGAGTTCCTTACCAAAAGCACAACCAAAAATGGAAGCAAAATTTTACATTGAAGTGACACTGTTTTAACTCCATTTAATATCATGAAACTCATCTTGATGACCTTAAAAACTTGAAGAACCTGAATACAAAAAGACCAAAGAACAAATGAAAACTCCTCCCTAAACAACTTGCACTTAACAGAGCACAACATGACTACAGTATAACAAGTTCAATACAGAGTTGCTAAGATATTGCATAAGAAATGGGAAGAAAGGTCAACCATACACAGCAGAAACAAAATCTGGCCACTCAGAGCCGAAGATTTCCACAATTGAAACCCACTCTCGAGAAAGGGGGAAGAGCTCTCAGAGCTCAATCTACAGAACCCACCAAGCAAATTCAATCAAGAATAGAAAAGAAAGCAATCTGAGAGACAGAGTTGAATGA

mRNA sequence

ATGACCTCAAAGTCATCCATGCAATTTGACAAAAGCTCCTCTGAGTCGCCACCATCCTTACATTTCAAGGCTATTTCAGCCTTCTCTGGATCAGCTCCCATTGAAGAAACTATTTCAGCAAACCAGCATAAGGGTTCAAATGAAGATGATGAAATAGAAACCAAGGCTTCTGCTGCAATCGTATTGAGGTCCTCCGACAGTTTGCCATCATCTTCAACTGATTCTAGAAAATGTGACTCAACTTGGTTATCACCAGACTCTCCTGTAGTTGAAGAGTCTTTATCCTTTCCAGGACTTACAGAAGCCTTGAACAAGGGGCGAGATTCTTCTTTCACAATCTCGAACTTGGAGCCATTACAGAAGCTTCCTTCGAGGGGGCTTACAGTATCAGACCTAATGCCAGGTTTCAACTTCTTAACGCTACAGATATCATCTTCAGCAAGCATTGCATTTTCTATCAACATTTTGGAACTCTCAGTATCTAAAAGATGGTGTCCCATGAGACCTTGTGCAGATTTTGTCAAAGAAGTAGTGGATGATGACAGACTTGAACTTGCAATATCTTTGTCTGGCGATGAAGTTCATAAATCTGGACAGTTTATTAATATTTCAGATGAATTTATAAGCTCAGAACTTCGATATAACAAGTTCAATACAGAGTTGCTAAGATATTGCATAAGAAATGGGAAGAAAGGTCAACCATACACAGCAGAAACAAAATCTGGCCACTCAGAGCCGAAGATTTCCACAATTGAAACCCACTCTCGAGAAAGGGGGAAGAGCTCTCAGAGCTCAATCTACAGAACCCACCAAGCAAATTCAATCAAGAATAGAAAAGAAAGCAATCTGAGAGACAGAGTTGAATGA

Coding sequence (CDS)

ATGACCTCAAAGTCATCCATGCAATTTGACAAAAGCTCCTCTGAGTCGCCACCATCCTTACATTTCAAGGCTATTTCAGCCTTCTCTGGATCAGCTCCCATTGAAGAAACTATTTCAGCAAACCAGCATAAGGGTTCAAATGAAGATGATGAAATAGAAACCAAGGCTTCTGCTGCAATCGTATTGAGGTCCTCCGACAGTTTGCCATCATCTTCAACTGATTCTAGAAAATGTGACTCAACTTGGTTATCACCAGACTCTCCTGTAGTTGAAGAGTCTTTATCCTTTCCAGGACTTACAGAAGCCTTGAACAAGGGGCGAGATTCTTCTTTCACAATCTCGAACTTGGAGCCATTACAGAAGCTTCCTTCGAGGGGGCTTACAGTATCAGACCTAATGCCAGGTTTCAACTTCTTAACGCTACAGATATCATCTTCAGCAAGCATTGCATTTTCTATCAACATTTTGGAACTCTCAGTATCTAAAAGATGGTGTCCCATGAGACCTTGTGCAGATTTTGTCAAAGAAGTAGTGGATGATGACAGACTTGAACTTGCAATATCTTTGTCTGGCGATGAAGTTCATAAATCTGGACAGTTTATTAATATTTCAGATGAATTTATAAGCTCAGAACTTCGATATAACAAGTTCAATACAGAGTTGCTAAGATATTGCATAAGAAATGGGAAGAAAGGTCAACCATACACAGCAGAAACAAAATCTGGCCACTCAGAGCCGAAGATTTCCACAATTGAAACCCACTCTCGAGAAAGGGGGAAGAGCTCTCAGAGCTCAATCTACAGAACCCACCAAGCAAATTCAATCAAGAATAGAAAAGAAAGCAATCTGAGAGACAGAGTTGAATGA

Protein sequence

MTSKSSMQFDKSSSESPPSLHFKAISAFSGSAPIEETISANQHKGSNEDDEIETKASAAIVLRSSDSLPSSSTDSRKCDSTWLSPDSPVVEESLSFPGLTEALNKGRDSSFTISNLEPLQKLPSRGLTVSDLMPGFNFLTLQISSSASIAFSINILELSVSKRWCPMRPCADFVKEVVDDDRLELAISLSGDEVHKSGQFINISDEFISSELRYNKFNTELLRYCIRNGKKGQPYTAETKSGHSEPKISTIETHSRERGKSSQSSIYRTHQANSIKNRKESNLRDRVE

Homology

The following BLAST results are available for this feature:

BLAST of ClCG04G012030 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G012030 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G012030 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G012030 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G012030.1	ClCG04G012030.1	mRNA