ClCG04G011470 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G011470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	GTPase IMAP family member 1, putative
Location	CG_Chr04: 26446105 .. 26446596 (-)
RNA-Seq Expression	ClCG04G011470
Synteny	ClCG04G011470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGTTGGGTTGGAAGCTTGATTAAAAAAGCATGTAGTTTATGGAAATCATTAAAGGATGAAGGCGGCGGCGGGCGGAAGGTGGAGGCGGCGGCAGAGATGGTGGAAGAATGGAAGGAAATGATAGTAGCATTGTGCGTGTCGTCGGCGATAGAGATAGCAACAGTGTCGGTTCAAACACAAACAAAACTGCCAATTACATTTCAGATTCTATCAATTGCTGTGTTGCTGTGCTATGGATGTGTTGGTTTTGGGAAAATGACCAAATCCATTTTCCAAACAGCTTCAAACATATTGTACTGTGTGGGTGGCTTTTCGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCTTCATCTTACTCCTTTATATATTACTCTTTTGCTTCATCTTCATGCTTATCACCACCACTCACAACCCACCACCACCACCTCCTCCTCCTCCTTCCTATTATATATCAACCTGA

mRNA sequence

ATGCTTTGTTGGGTTGGAAGCTTGATTAAAAAAGCATGTAGTTTATGGAAATCATTAAAGGATGAAGGCGGCGGCGGGCGGAAGGTGGAGGCGGCGGCAGAGATGGTGGAAGAATGGAAGGAAATGATAGTAGCATTGTGCGTGTCGTCGGCGATAGAGATAGCAACAGTGTCGGTTCAAACACAAACAAAACTGCCAATTACATTTCAGATTCTATCAATTGCTGTGTTGCTGTGCTATGGATGTGTTGGTTTTGGGAAAATGACCAAATCCATTTTCCAAACAGCTTCAAACATATTGTACTGTGTGGGTGGCTTTTCGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCTTCATCTTACTCCTTTATATATTACTCTTTTGCTTCATCTTCATGCTTATCACCACCACTCACAACCCACCACCACCACCTCCTCCTCCTCCTTCCTATTATATATCAACCTGA

Coding sequence (CDS)

ATGCTTTGTTGGGTTGGAAGCTTGATTAAAAAAGCATGTAGTTTATGGAAATCATTAAAGGATGAAGGCGGCGGCGGGCGGAAGGTGGAGGCGGCGGCAGAGATGGTGGAAGAATGGAAGGAAATGATAGTAGCATTGTGCGTGTCGTCGGCGATAGAGATAGCAACAGTGTCGGTTCAAACACAAACAAAACTGCCAATTACATTTCAGATTCTATCAATTGCTGTGTTGCTGTGCTATGGATGTGTTGGTTTTGGGAAAATGACCAAATCCATTTTCCAAACAGCTTCAAACATATTGTACTGTGTGGGTGGCTTTTCGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCTTCATCTTACTCCTTTATATATTACTCTTTTGCTTCATCTTCATGCTTATCACCACCACTCACAACCCACCACCACCACCTCCTCCTCCTCCTTCCTATTATATATCAACCTGA

Protein sequence

MLCWVGSLIKKACSLWKSLKDEGGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGCVGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYILLFCFIFMLITTTHNPPPPPPPPPSYYIST

Homology

[Close]

BLAST of ClCG04G011470 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 87/140 (62.14%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 11  KACSLWKSLKD--EGGGG-----RKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQT 70
           KA  LW+ L+D  EGGGG         AAAEMVEEWK+MIVA CVSSAI IATVSVQ + 
Sbjct: 9   KARRLWE-LEDGVEGGGGGGGPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEK 68

Query: 71  KLPITFQILSIAVLLCYGCVGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPY 130
           KLP  F  LS+ +LLC+G V FGKMTKSI +  S ILYCVGG  GVTA FIA+AIPY+ Y
Sbjct: 69  KLPRVFNFLSLTLLLCFGFVAFGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPYASY 128

Query: 131 FQFFILLLYILLFCFIFMLI 144
           FQ  I L+Y L+F  +FML+
Sbjct: 129 FQIIIFLIY-LIFWLMFMLV 146

[Close]

BLAST of ClCG04G011470 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 23  GGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGC 82
           GG  R  E AAEMVEEWK+MI+  CVSSAI IATVSV  +T+LP +FQ+LSIAVLLC+  
Sbjct: 3   GGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVS 62

Query: 83  VGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPY 121
           V F +M  SIF+T S ILYCVGG    ++ FIATAIPY
Sbjct: 63  VVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of ClCG04G011470 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-15
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 23  GGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGC 82
           GG  R +E  AEMVEE KEMI+  C+SSAI IATVSVQT+TKLP +FQ LSIAVL+C+  
Sbjct: 18  GGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLS 77

Query: 83  VGFGKMTKSIFQTASNIL 101
           VGF +M  SIF+T S IL
Sbjct: 78  VGFARMISSIFKTLSKIL 95

[Close]

BLAST of ClCG04G011470 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 31  AAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGCVGFGKMTK 90
           +A EM+ +W+ M+V  C+ +AI IATVSVQ QTKL   FQ LS A++ C+      K+ K
Sbjct: 54  SAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIK 113

Query: 91  SIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYILLFCFI 140
              Q  S ILY +GGF  VTAFFIA AIPY+ +FQ   L LY L+F FI
Sbjct: 114 --HQRVSLILYFLGGFCFVTAFFIAIAIPYAFHFQILTLALY-LVFLFI 159

[Close]

BLAST of ClCG04G011470 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 24  GGGRKVEAAAEMV-------EEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAV 83
           GG   VEAA  +V        +W E+++  C++SAI+IA VSVQ Q +L  TF +LS+A+
Sbjct: 57  GGAAPVEAAVSVVVHRHQIQMDWTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSLAI 116

Query: 84  LLCYGCVGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYILLF 142
           L  + C    +  KS F   + +L  +G F  VTAFF+A  IP+  Y +F    +Y +  
Sbjct: 117 LFAFACFFVSEFIKSKFLVTAQVLQKLGIFFTVTAFFMAITIPFPLYHKFATWAIYTISV 176

[Close]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.6e-49
Identity = 114/158 (72.15%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 3   CWVGSLIKKACSLWKSLKDE-------GGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIA 62
           CWVGS I+KAC LW+SLK E       G GGRK+   AEMVEEWKEMIVALCVSSAI IA
Sbjct: 4   CWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGIA 63

Query: 63  TVSVQTQT--KLPITFQILSIAVLLCYGCVGFGKMTKSIFQTASNILYCVGGFSGVTAFF 122
           TVSVQ +T  +LP TFQ LSI VLLC+G VGF KMTK IF+T S ILYCVGGF GVTAFF
Sbjct: 64  TVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFF 123

Query: 123 IATAIPYSPYFQFFILLLYILLFCFIFMLITTTHNPPP 152
           IATAIP++PYFQ  I +LY LLFCFIFMLITT HN  P
Sbjct: 124 IATAIPFAPYFQIIIFILY-LLFCFIFMLITTIHNQQP 160

[Close]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.0e-29
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 23  GGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGC 82
           GG  R +E  AEMVEE KEMI+  C+SSAI IATVSVQT+TKLP +FQ LSIAVL+C+  
Sbjct: 18  GGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLS 77

Query: 83  VGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYILLFCFIF-M 142
           VGF +M  SIF+T S ILYC GGF   T  FIATAIPY  +F   +++LY  +FC IF M
Sbjct: 78  VGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLY-SIFCIIFVM 137

Query: 143 LITTTHNPPPP 153
           LI+ THNP  P
Sbjct: 138 LISITHNPSSP 147

[Close]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-23
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 23  GGGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGC 82
           GG  R  E AAEMVEEWK+MI+  CVSSAI IATVSV  +T+LP +FQ+LSIAVLLC+  
Sbjct: 17  GGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVS 76

Query: 83  VGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYILLFCFIFML 142
           V F +M  SIF+T S ILYCVGG    ++ FIATAIPY+  F                  
Sbjct: 77  VVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF------------------ 126

Query: 143 ITTTHNPPPP 153
              THNP PP
Sbjct: 137 --ITHNPSPP 126

[Close]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-20
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 24  GGGRKVEAAAEMVEEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLLCYGCV 83
           G  R +E  AE VEE KE I+ LCVSSAI I T SVQ +TKLP +FQ LS+ +LLC+  V
Sbjct: 21  GARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSV 80

Query: 84  GFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPY-SPYFQFFILLLYIL--LFCFIF 143
            F +M +S+F+T S ILYCVG F   T  FIATAI Y   +F   +++LY +  + C IF
Sbjct: 81  VFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIF 140

Query: 144 ML-ITTTHNPPPPP 154
           ++ I+ THN P  P
Sbjct: 141 IIFISITHNDPSSP 154

[Close]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 23  GGGGRKVEAAAEMV----EEWKEMIVALCVSSAIEIATVSVQTQTKLPITFQILSIAVLL 82
           G G  K   AA +V     EW E+++A C++SA++IA +SVQ  T+LP  F + S+A+LL
Sbjct: 62  GDGAEKQAKAAGLVVVHHMEWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILL 121

Query: 83  CYGCVGFGKMTKSIFQTASNILYCVGGFSGVTAFFIATAIPYSPYFQFFILLLYIL 135
            +  V   K     F  A+ +L   G F  VTAFFIA  IP+  Y +F   ++Y +
Sbjct: 122 AFASVVVSKFINPKFLRAAQVLEKFGVFFTVTAFFIAITIPFPFYLKFASWVVYAI 177

The following BLAST results are available for this feature:

BLAST of ClCG04G011470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572911.1	2.4e-30	62.14	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652531.1	3.2e-22	64.29	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	2.9e-15	65.38	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6584385.1	1.3e-12	51.38	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3947054.1	1.8e-09	37.60	hypothetical protein CMV_026761 [Castanea mollissima]	[more]

BLAST of ClCG04G011470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G011470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB6	5.6e-49	72.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LCY2	5.0e-29	61.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LSX4	2.4e-23	53.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQP5	2.5e-20	50.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A7N2R866	4.4e-09	38.79	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of ClCG04G011470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 19..147
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 19..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G011470.1	ClCG04G011470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding