ClCG04G010730 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G010730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNeuraminidase
LocationCG_Chr04: 25741354 .. 25744832 (-)
RNA-Seq ExpressionClCG04G010730
SyntenyClCG04G010730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAACCAAACTCCAGGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCGATCAGATTGTACTTCGCCGGATCCCTAGCGGCGTTGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGTATCGGATGATTCTCCGCATTCAAAAAATTCGTACCCTGAAACACGATTTCCAAATCTGTTCCATATCGAACAGCCAAAAGCTTAGTCCCAGATTCCGTGTTCATGTTTTTCGTTAATGGGTTTACGCCAGTGTAGTCAAAAACCCTAATGGGTCTTTGTGGAAAATCAGTGGAGTACGAATTGGTAGCAATCTTTCTGTAATGAGATTCCAATATGGACGAATCAGGTCGAATAAAGGATTGATTGTTCATAGAAGCAAAAAAGCTCTTTCCATTCAAACCCTTGCAGGTTTTCCCAGATGGGCAGTTCTGGAGATTGAGGCTTATGGTGATAAACACTCTTTTCTTAACTGTTTTAGGAACATTACATGGATACAGGGGAGAATCAAGGCTATGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTACAGGTATTTGATTAGATGGGAAATTTGTTTGTGAGCGAAGTTTATTCATTTTCCTGCTATTGTATCTTAAGAATCCAATGGAGGTGGAGTTGTTGAAGGGGAAAATTGAAGTTACATAAGGCGAGATGGCCATTGGGAAGAGGATTCCAGAGGAGTGGTCTGGAATTTGAATTTGATCTGTATTGAGCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCACTGTTAATGTATGGTTGGCTATGGCAAAGAAGAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGGTAAGTTTTTCCCCTTTCTACTGTTGAAATGAATGTATCTGGCATTGAACATTGTGATGATAGAAAATTATGTTTAATGTGTGTTCGATTTTGATATAACAACATGAAAGTTTTGAAAGTCAAGTGTAGTATTTACGTTTGCTAGAGCAAGGATAAAGAGGTCCTGGCAAGCCATTTATGGTATAGGCATCAGAATTGTTAGGTCCACCTCCAGATTTCAACGTCTCCTTTTCAACTTCTTCCACATCTCCATTCCACCATTCACCTGTATGTGGGGTAAAAAATGTTTAAATAACTGTTCATCACAAATCATAAATTATTAGGAACCCATTTTGATAACCATAAGCAAAAATGTTTAATGCTTGTTTACTCACCATTTATTTACGATGGTTTCATATTTCTTAAAGAACCATCTGAATTCATAGCAAAATTTCAAAAGCAAAACTTTTTCTTTTTTTAGTTTTCATGAGTTGGTCTTGATTCTGAAACATCCCTAAATAGTAGTTAAAAAATAATGCTTATAAGCTTAATCTTATAAAAGCTATGAACAAAAAACTAAGGCGATGTTTGGTAACCATTTTGTTTTTAATTTTCTGTTTTAAAAAATTATGTTTACTTCCTTTGATTTCTATACTATGTTTTTCTCAATTCTTACACCTACATTTGAATTTCTAGCCAAATTGAAAAACAAAAACAAGTTTTCAAAAACTATATATATATATATAATTTTCAAAATTTAGCTTAGATTTTGAAAATATTTTTAAAAGGTAGCTAACAAAGTAAGGAAACACCTTGGTGGACTTGGTATTTATAGGCTGAAATTTCAAAAACATAAAACAGAAAACAAACGGTTACCAAAACCGAACTCAAATAATTATCAAACATGGTCTAACTTTCTCGAGTACCCATCAACCCAAAGGTCTAAAAAGTCATACCCATGTATGATATTGATTTTCAAACTCCTGTAACTAATGAGGCCTGTGGTAGAAAATAAGTCAAAATGACTGTTGAAACTCGGCCACTCTGTGGAGAGAGGCATCAGAAGGTATTGGAGAAAGAAAGTTATTTAAAAAATTTCAAAGTCACTTTTGGTCATATCCAACCAATACATACACCATCAAGATTTGATATTTTGAAAAGCGTTTTTATTGAGATTAAAAAGCACATAACCCTTTCAAAAGTCATCACAGACTTTCTTTACTCGGGATGAACTAAAGACTAACCAAAGATAAGGGGAATCCCAGCTTCAATTGGAAAAGTGGAAAATGGGTAAGGCATGCGAGGGTAAATGATGAAGGCACCATGCACAGAGGCACGTTGCCATGAGTAATGTGCGTGCCACCACAATGTCCCTCTCTGGTCAATCACTGAGAATTTGTATGTGTATGATTCTCCTGTTCTGATAGGGCACTGTGTTATATAAGCTGGACCATCTGCCCATCCTGTTCTTAATTGCTTCACCCCATGCCTGCAAATCATCTAATTTGTTAGAGACCTTATGGGTTACATTTCGTTTTACTTAGTATTTACTTTTAGAAGCTCAAACTTCCTAATCCTGTAATGTTGAAAGGCAGTTCAATACTAGACATTACATTCTACTAGCTATAACATGTTTGATACTTACCAATGAATAGTTGTGTTTTCATTTATGCAATTATTGACCTTGATTTCAACTGTATCACCTTCATGAACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCACAATCTTGTTACCTTCTTCCACTCCACCTTTATGGGAAAGAAAATGATAGTTTTCAGTTAGAAATGACAATAACCATATAGAAACATCCATCCTTGTTAAGAACAAAATATATAGCTGCAAATTTGCAACCAAATAGGTGTGGAACTTTCTTCTTCAAGCTTACATTAAACTGAAAGCGTCGAATGACAGGAGAAGCGAAGGTGAATGGCACAAAACCAACAAGGAGGACGTTTATGAATATGACAAGTAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTTTTTAGCTCTTCAAAACCAGTTAGCTAACAATTTATATATATACTACAAAAAGTTGCACTATTTTTTTTAGTTTTTTGCTCATTTTGTACCACATTCTGCAGTCATTGTTACAGTCTGTGAATCCTTTTGATGTTGTGGTGAGTGGTGCTTTGTCATGGGGGTTGGTTTGTAAGTGGGGTTAATTGCTGAGGTCAATATGTGGGTAATGTCAATTGGTTGTTTTTTAAATTAATGATAAGTAGATTAGGTGTTTGGCTGCTGCATTATACACACATAATACAACCACTAATGAAATATTATTGATTGTTATTGCATTTTGTCATGAAATTAGAATTCTAATTGCCATTGCCATATTCCTAGGATTTCAAGAAGAGAATTCGATTGTTGGTTTGAAAGAGTCAAGACCCAGAATTGAAGTGGGTTGGCTTGAGTTTATCTTGTTCTTTATTAAGTATTAA

mRNA sequence

ATGTATAAACCAAACTCCAGGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCGATCAGATTGTACTTCGCCGGATCCCTAGCGGCGTTGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGTATCGGATGATTCTCCGCATTCAAAAAATTCGTACCCTGAAACACGATTTCCAAATCTGTTCCATATCGAACAGCCAAAAGCTTAGTCCCAGATTCCGTGTTCATGTTTTCCCAGATGGGCAGTTCTGGAGATTGAGGCTTATGGGGAGAATCAAGGCTATGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTACAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCACTGTTAATGTATGGTTGGCTATGGCAAAGAAGAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGAATTCTAATTGCCATTGCCATATTCCTAGGATTTCAAGAAGAGAATTCGATTGTTGGTTTGAAAGAGTCAAGACCCAGAATTGAAGTGGGTTGGCTTGAGTTTATCTTGTTCTTTATTAAGTATTAA

Coding sequence (CDS)

ATGTATAAACCAAACTCCAGGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCGATCAGATTGTACTTCGCCGGATCCCTAGCGGCGTTGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGTATCGGATGATTCTCCGCATTCAAAAAATTCGTACCCTGAAACACGATTTCCAAATCTGTTCCATATCGAACAGCCAAAAGCTTAGTCCCAGATTCCGTGTTCATGTTTTCCCAGATGGGCAGTTCTGGAGATTGAGGCTTATGGGGAGAATCAAGGCTATGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTACAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCACTGTTAATGTATGGTTGGCTATGGCAAAGAAGAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGAATTCTAATTGCCATTGCCATATTCCTAGGATTTCAAGAAGAGAATTCGATTGTTGGTTTGAAAGAGTCAAGACCCAGAATTGAAGTGGGTTGGCTTGAGTTTATCTTGTTCTTTATTAAGTATTAA

Protein sequence

MYKPNSRIIRPNSDRRPPSRRHRHRVSFRRIDQIVLRRIPSGVEIPKSPAHNEEIVPMNMYRMILRIQKIRTLKHDFQICSISNSQKLSPRFRVHVFPDGQFWRLRLMGRIKAMEFVGKCSGKGCILHIREVYRRVVVWPGAIIMAVVLKGFVYAASISTTVNVWLAMAKKSSLLSAPLITLSRILIAIAIFLGFQEENSIVGLKESRPRIEVGWLEFILFFIKY
Homology
[Close]
BLAST of ClCG04G010730 vs. NCBI nr
Match: KAG7012142.1 (hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 8.9e-23
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 0 

Query: 1  MYKPNSRIIRPNSDRRPPSRRHRHRVSFRRIDQIVLRRIPSGVEIPKSPAHNEEIVPMNM 60
          MY+P+S I+RP+SD RP S RHR+ VS RRID+I+LRRIP  +EIPKS A +EEIVPM+M
Sbjct: 1  MYEPSSWIVRPDSDGRPASGRHRYCVSLRRIDEIILRRIPGHIEIPKSSADDEEIVPMDM 60

Query: 61 YRMILRIQKIRTLKHDFQICSISNSQKLSPRFRVHV 97
            MIL IQK   LKHDFQIC + N Q  S +F VHV
Sbjct: 61 NWMILHIQKTCPLKHDFQICPVCNFQNPSSKFCVHV 96

[Close]
BLAST of ClCG04G010730 vs. NCBI nr
Match: GER28592.1 (neuraminidase [Striga asiatica])

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-05
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 6   SRIIRPNSDRRPPSRRHRHRVSFRRIDQIVLRRIPSGVEIPKSPAHNEEIVPMNMYRMIL 65
           +RIIR   DR PP RRH +R+   R+DQI   R+ + VEIP+   H+EEI P+ M  M L
Sbjct: 73  TRIIRDEPDRDPPPRRHPYRIPLHRVDQIEPGRVLARVEIPEPLPHHEEIEPVQMQGMAL 132

Query: 66  RIQKIRTLKHDFQ 79
                R L++D Q
Sbjct: 133 CPDYARVLQNDLQ 145

[Close]
BLAST of ClCG04G010730 vs. ExPASy TrEMBL
Match: A0A0A0LT31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 106 RLMGRIKAMEFVGKCSGKGCILHIREVYRRVVVWPGAIIMAVVLKGFVYAASISTTVNVW 165
           R+ GRIKA EF GKCSGKGCILHI EV+RRVVVWPGAIIMAVVLKGFVYAASISTTVNVW
Sbjct: 57  RVQGRIKATEFAGKCSGKGCILHIGEVFRRVVVWPGAIIMAVVLKGFVYAASISTTVNVW 116

Query: 166 LAMAKKSSLLSAPLITLSR 185
           LAMAKKSS LSAPLITLSR
Sbjct: 117 LAMAKKSSSLSAPLITLSR 135

[Close]
BLAST of ClCG04G010730 vs. ExPASy TrEMBL
Match: A0A5A7P7A4 (Neuraminidase OS=Striga asiatica OX=4170 GN=STAS_04400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 6   SRIIRPNSDRRPPSRRHRHRVSFRRIDQIVLRRIPSGVEIPKSPAHNEEIVPMNMYRMIL 65
           +RIIR   DR PP RRH +R+   R+DQI   R+ + VEIP+   H+EEI P+ M  M L
Sbjct: 73  TRIIRDEPDRDPPPRRHPYRIPLHRVDQIEPGRVLARVEIPEPLPHHEEIEPVQMQGMAL 132

Query: 66  RIQKIRTLKHDFQ 79
                R L++D Q
Sbjct: 133 CPDYARVLQNDLQ 145

The following BLAST results are available for this feature:
BLAST of ClCG04G010730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012142.18.9e-2363.54hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyro... [more]
GER28592.12.9e-0545.21neuraminidase [Striga asiatica][more]
BLAST of ClCG04G010730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G010730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT311.8e-2991.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1[more]
A0A5A7P7A41.4e-0545.21Neuraminidase OS=Striga asiatica OX=4170 GN=STAS_04400 PE=4 SV=1[more]
BLAST of ClCG04G010730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G010730.1ClCG04G010730.1mRNA