ClCG04G009230 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G009230
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transcription factor, TCP
Location	CG_Chr04: 24081499 .. 24082249 (-)
RNA-Seq Expression	ClCG04G009230
Synteny	ClCG04G009230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCGGAGATCATTCTACACAAATTCCCCTCTTCTTCCGATCACCATTCTCAGCCCACCGCTTCTCACTCAATCGTCGGTAGTAACTCATCTCCGGCCACCATCACGCACCAATCCCTCGTCCCTCGCAAGTCCACCGCCTCCTTATCCTCCTCTTCTTCCAAGGACCGCCACACCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCGGCTCTCTGTGCCGCCCGCATCTTTCAGTTGACGCGAGAGCTCGGTCATCGTTCCGATGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCCGAGCCCTCCATCATTGCCGCTACGGGTACTGGTACTGTTCCAGCAGCTCCGATCTCCACTATCTCCCCAGCTATGGCTTCGTCCGCTCGGTCCGTTTCCTGTAGGGTTCAGCCAGTGACGGTGGGCGGCGGTGGACAGGGGATGTTCGCGATGCCACCGCCAAGCTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCGGCAGCCGGCAGTGACTACCGCCACATGCCATTCACGGCGCTGTTATTGCAGCCATCGACAGCGGAGGAAGCGGAGGAGAGACAGGAGGAAGAGGTCTTCAGAGAATAATAGAAAATTGAAAGAAAGGATGAAACAGACACAGACCGGAGTCTAGAATTGCAGTATGGAAATTTTACCCTTTTTTCAGCTCTTCTCCGTTTCGCCTTCCTCTCGTTCTGGTTATGGCTGGAATTTGTAA

mRNA sequence

ATGGTATCGGAGATCATTCTACACAAATTCCCCTCTTCTTCCGATCACCATTCTCAGCCCACCGCTTCTCACTCAATCGTCGGTAGTAACTCATCTCCGGCCACCATCACGCACCAATCCCTCGTCCCTCGCAAGTCCACCGCCTCCTTATCCTCCTCTTCTTCCAAGGACCGCCACACCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCGGCTCTCTGTGCCGCCCGCATCTTTCAGTTGACGCGAGAGCTCGGTCATCGTTCCGATGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCCGAGCCCTCCATCATTGCCGCTACGGGTACTGGTACTGTTCCAGCAGCTCCGATCTCCACTATCTCCCCAGCTATGGCTTCGTCCGCTCGGTCCGTTTCCTGTAGGGTTCAGCCAGTGACGGTGGGCGGCGGTGGACAGGGGATGTTCGCGATGCCACCGCCAAGCTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCGGCAGCCGGCAGTGACTACCGCCACATGCCATTCACGGCGCTGTTATTGCAGCCATCGACAGCGGAGGAAGCGGAGGAGAGACAGGAGGAAGAGCTCTTCTCCGTTTCGCCTTCCTCTCGTTCTGGTTATGGCTGGAATTTGTAA

Coding sequence (CDS)

ATGGTATCGGAGATCATTCTACACAAATTCCCCTCTTCTTCCGATCACCATTCTCAGCCCACCGCTTCTCACTCAATCGTCGGTAGTAACTCATCTCCGGCCACCATCACGCACCAATCCCTCGTCCCTCGCAAGTCCACCGCCTCCTTATCCTCCTCTTCTTCCAAGGACCGCCACACCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCGGCTCTCTGTGCCGCCCGCATCTTTCAGTTGACGCGAGAGCTCGGTCATCGTTCCGATGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCCGAGCCCTCCATCATTGCCGCTACGGGTACTGGTACTGTTCCAGCAGCTCCGATCTCCACTATCTCCCCAGCTATGGCTTCGTCCGCTCGGTCCGTTTCCTGTAGGGTTCAGCCAGTGACGGTGGGCGGCGGTGGACAGGGGATGTTCGCGATGCCACCGCCAAGCTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCGGCAGCCGGCAGTGACTACCGCCACATGCCATTCACGGCGCTGTTATTGCAGCCATCGACAGCGGAGGAAGCGGAGGAGAGACAGGAGGAAGAGCTCTTCTCCGTTTCGCCTTCCTCTCGTTCTGGTTATGGCTGGAATTTGTAA

Protein sequence

MVSEIILHKFPSSSDHHSQPTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRHMPFTALLLQPSTAEEAEERQEEELFSVSPSSRSGYGWNL

Homology

[Close]

BLAST of ClCG04G009230 vs. NCBI nr
Match: XP_038882900.1 (transcription factor TCP11 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 8.4e-95
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQPTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHT 60
           M SEI+LHKFPS+SDH+SQPTASHS+VGSNSS A IT Q++VPRKST SL   SS+DRHT
Sbjct: 1   MGSEIVLHKFPSTSDHNSQPTASHSVVGSNSSLANITPQAVVPRKSTTSL---SSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRHM 180
           ST+SPAMASSARS+SCRVQP+TVGGGGQGMFAMPPPSCRLDLCQPVGMEYSA G+DYRHM
Sbjct: 121 STLSPAMASSARSISCRVQPLTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAVGNDYRHM 180

Query: 181 PFTALLLQPSTAEEAEERQEEELF 205
           PFTALLLQPSTAEEAEERQEEE+F
Sbjct: 181 PFTALLLQPSTAEEAEERQEEEVF 201

[Close]

BLAST of ClCG04G009230 vs. NCBI nr
Match: XP_004143267.1 (transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein Csa_003031 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93
Identity = 182/205 (88.78%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LHKFPSSSD HSQ PTASHS+VGSNSSP TIT QSL+PRKS   LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCRVQPVTVGG GQGMFAMPPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEEAEERQEEELF 205
           MPFTALLLQPSTAEE EERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEETEERQEEEVF 205

[Close]

BLAST of ClCG04G009230 vs. NCBI nr
Match: XP_008462463.1 (PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 4.6e-93
Identity = 180/205 (87.80%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LHKFPSSSD HSQ PTASHS+VGSNSSPATI+ QSL+PRKS  SLSSSSSKDRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCR+QPVTVGG GQGMF+MPPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295

Query: 181 MPFTALLLQPSTAEEAEERQEEELF 205
           MPFTALLLQPST EE EERQEEE+F
Sbjct: 296 MPFTALLLQPSTGEETEERQEEEVF 320

[Close]

BLAST of ClCG04G009230 vs. NCBI nr
Match: TYK07305.1 (transcription factor TCP11-like [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.9e-92
Identity = 178/205 (86.83%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LH FPSSSD HSQ PTASHS+VGSNSSPATI+ QSL+PRKS  SLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCR+QPVTVGG GQGMF++PPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEEAEERQEEELF 205
           MPFTALLLQPST EE EERQEEE+F
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVF 205

[Close]

BLAST of ClCG04G009230 vs. NCBI nr
Match: XP_022926085.1 (transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.4 bits (877), Expect = 2.8e-90
Identity = 181/206 (87.86%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQPT-ASHSIVGSNSSPATITHQSLVPRKSTASL-SSSSSKDR 60
           M SEI LHKFPSSSDHHSQPT ASHS+V SN+SP  +T QS+VPRKSTASL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120
           HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYR 180
           PISTISPAMASSA SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAG+DYR
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEEAEERQEEELF 205
           HMPFTALLLQPSTA+EAEERQEEE+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVF 206

[Close]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-35
Identity = 90/153 (58.82%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 52  SSSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATG 111
           S+ +KDRHTKVNGR RRV MPAL AARIFQLTRELGH+++GETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 112 TGTVPAAPISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYS 171
            GT     IS      A  + S S    P T     Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 172 AAGSDYRHMPFTALLLQP--STAEEAEERQEEE 203
             G  Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 VNG--YSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-28
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 22  ASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHTKVNGRGRRVRMPALCAARIFQ 81
           AS SIV  ++ P   T  +     +TA+ +  S+KDRHTKV+GRGRR+RMPALCAAR+FQ
Sbjct: 28  ASLSIVPRSTPPEDST-LATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQ 87

Query: 82  LTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASSARSVS 136
           LTRELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S ++ SS  ++S
Sbjct: 88  LTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 53  SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGT 112
           SS+KDRHTKV GRGRR+RMPALCAARIFQLTRELGH+SDGETI+WLL+QAEPSIIAATG+
Sbjct: 76  SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGS 135

Query: 113 GTVPAAPISTISPAMASSA 132
           GT+PA+       A+ASSA
Sbjct: 136 GTIPAS-------ALASSA 147

[Close]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot
Match: Q9FMX2 (Transcription factor TCP7 OS=Arabidopsis thaliana OX=3702 GN=TCP7 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 40  SLVPRKSTASLSSSSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLL 99
           +L+ ++ +  +    +KDRH+KV+GRGRR+RMP +CAAR+FQLTRELGH+SDG+TIEWLL
Sbjct: 24  ALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLL 83

Query: 100 RQAEPSIIAATGTGTVPAAPISTISPAMASSARSVSCRVQPVTVGGG 147
           RQAEPSIIAATGTGT PA+  ST S ++  +  S S   +P ++ GG
Sbjct: 84  RQAEPSIIAATGTGTTPAS-FSTASVSIRGATNSTSLDHKPTSLLGG 129

[Close]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 11  PSSSDHHSQPTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHTKVNGRGRRVR 70
           P S    SQP  +   +      + +      P      L  +S+KDRHTKV+GRGRR+R
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAKKPP------LKRASTKDRHTKVDGRGRRIR 138

Query: 71  MPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASS 130
           MPALCAAR+FQLTRELGH+SDGETIEWLL+QAEPS+IAATGTGT+P A  ++++ ++ SS
Sbjct: 139 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP-ANFTSLNISLRSS 196

Query: 131 ARSVS 136
             S+S
Sbjct: 199 GSSMS 196

[Close]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.7e-94
Identity = 184/207 (88.89%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LHKFPSSSD HSQ PTASHS+VGSNSSP TIT QSL+PRKS   LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCRVQPVTVGG GQGMFAMPPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEEAEERQEEELFSV 207
           MPFTALLLQPSTAEE EERQEEELF V
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELFFV 207

[Close]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 180/205 (87.80%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LHKFPSSSD HSQ PTASHS+VGSNSSPATI+ QSL+PRKS  SLSSSSSKDRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCR+QPVTVGG GQGMF+MPPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295

Query: 181 MPFTALLLQPSTAEEAEERQEEELF 205
           MPFTALLLQPST EE EERQEEE+F
Sbjct: 296 MPFTALLLQPSTGEETEERQEEEVF 320

[Close]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 178/205 (86.83%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQ-PTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRH 60
           M S+I+LH FPSSSD HSQ PTASHS+VGSNSSPATI+ QSL+PRKS  SLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYRH 180
           IST+S AMASS RSVSCR+QPVTVGG GQGMF++PPPSCRLDLCQPVGMEYSAAG+DYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEEAEERQEEELF 205
           MPFTALLLQPST EE EERQEEE+F
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVF 205

[Close]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.4e-90
Identity = 181/206 (87.86%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQPT-ASHSIVGSNSSPATITHQSLVPRKSTASL-SSSSSKDR 60
           M SEI LHKFPSSSDHHSQPT ASHS+V SN+SP  +T QS+VPRKSTASL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120
           HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYR 180
           PISTISPAMASSA SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAG+DYR
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEEAEERQEEELF 205
           HMPFTALLLQPSTA+EAEERQEEE+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVF 206

[Close]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.7e-85
Identity = 176/206 (85.44%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVSEIILHKFPSSSDHHSQPT-ASHSIVGSNSSPATITHQSLVPRKSTASL-SSSSSKDR 60
           M SEI LHKFPSSSDHHSQ T ASHS+V +NSSP  +T QS+VPRKSTASL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQSTAASHSVVRNNSSPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120
           HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAAGSDYR 180
           PISTI+PAMASSA SVSCRVQ V V    QGMFAM  PSCRLDLCQPVG++YSAAG+DYR
Sbjct: 121 PISTITPAMASSAPSVSCRVQSVGVAADEQGMFAM--PSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEEAEERQEEELF 205
           HMPFTALLLQPSTA+EAEERQE E+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEGEVF 204

[Close]

BLAST of ClCG04G009230 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 90/153 (58.82%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 52  SSSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATG 111
           S+ +KDRHTKVNGR RRV MPAL AARIFQLTRELGH+++GETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 112 TGTVPAAPISTISPAMASSARSVSCRVQPVTVGGGGQGMFAMPPPSCRLDLCQPVGMEYS 171
            GT     IS      A  + S S    P T     Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 172 AAGSDYRHMPFTALLLQP--STAEEAEERQEEE 203
             G  Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 VNG--YSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of ClCG04G009230 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-29
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 22  ASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHTKVNGRGRRVRMPALCAARIFQ 81
           AS SIV  ++ P   T  +     +TA+ +  S+KDRHTKV+GRGRR+RMPALCAAR+FQ
Sbjct: 28  ASLSIVPRSTPPEDST-LATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQ 87

Query: 82  LTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASSARSVS 136
           LTRELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S ++ SS  ++S
Sbjct: 88  LTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of ClCG04G009230 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-28
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 53  SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGT 112
           SS+KDRHTKV GRGRR+RMPALCAARIFQLTRELGH+SDGETI+WLL+QAEPSIIAATG+
Sbjct: 76  SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGS 135

Query: 113 GTVPAAPISTISPAMASSA 132
           GT+PA+       A+ASSA
Sbjct: 136 GTIPAS-------ALASSA 147

[Close]

BLAST of ClCG04G009230 vs. TAIR 10
Match: AT5G23280.1 (TCP family transcription factor )

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-28
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 40  SLVPRKSTASLSSSSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLL 99
           +L+ ++ +  +    +KDRH+KV+GRGRR+RMP +CAAR+FQLTRELGH+SDG+TIEWLL
Sbjct: 24  ALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLL 83

Query: 100 RQAEPSIIAATGTGTVPAAPISTISPAMASSARSVSCRVQPVTVGGG 147
           RQAEPSIIAATGTGT PA+  ST S ++  +  S S   +P ++ GG
Sbjct: 84  RQAEPSIIAATGTGTTPAS-FSTASVSIRGATNSTSLDHKPTSLLGG 129

[Close]

BLAST of ClCG04G009230 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 11  PSSSDHHSQPTASHSIVGSNSSPATITHQSLVPRKSTASLSSSSSKDRHTKVNGRGRRVR 70
           P S    SQP  +   +      + +      P      L  +S+KDRHTKV+GRGRR+R
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAKKPP------LKRASTKDRHTKVDGRGRRIR 138

Query: 71  MPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASS 130
           MPALCAAR+FQLTRELGH+SDGETIEWLL+QAEPS+IAATGTGT+P A  ++++ ++ SS
Sbjct: 139 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP-ANFTSLNISLRSS 196

Query: 131 ARSVS 136
             S+S
Sbjct: 199 GSSMS 196

The following BLAST results are available for this feature:

BLAST of ClCG04G009230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882900.1	8.4e-95	89.71	transcription factor TCP11 [Benincasa hispida]	[more]
XP_004143267.1	2.1e-93	88.78	transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein ...	[more]
XP_008462463.1	4.6e-93	87.80	PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo]	[more]
TYK07305.1	3.9e-92	86.83	transcription factor TCP11-like [Cucumis melo var. makuwa]	[more]
XP_022926085.1	2.8e-90	87.86	transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription...	[more]

BLAST of ClCG04G009230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	4.6e-35	58.82	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q9C518	7.1e-28	61.40	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]
Q9LSD5	1.0e-26	78.48	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]
Q9FMX2	1.0e-26	57.94	Transcription factor TCP7 OS=Arabidopsis thaliana OX=3702 GN=TCP7 PE=1 SV=1	[more]
Q93Z00	1.7e-26	53.60	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]

BLAST of ClCG04G009230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH86	2.7e-94	88.89	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A1S3CGZ3	2.2e-93	87.80	uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=...	[more]
A0A5D3C791	1.9e-92	86.83	Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1EK07	1.4e-90	87.86	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A6J1IR93	1.7e-85	85.44	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4...	[more]

BLAST of ClCG04G009230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	3.3e-36	58.82	TCP family transcription factor	[more]
AT1G58100.1	5.0e-29	61.40	TCP family transcription factor	[more]
AT3G27010.1	7.3e-28	78.48	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]
AT5G23280.1	7.3e-28	57.94	TCP family transcription factor	[more]
AT3G47620.1	1.2e-27	53.60	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 54..167 e-value: 4.8E-30 score: 105.1
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 55..109 score: 27.853064
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..218
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 37..135
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 37..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G009230.2	ClCG04G009230.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity