ClCG04G009180 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G009180
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 24035793 .. 24036059 (+)
RNA-Seq ExpressionClCG04G009180
SyntenyClCG04G009180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCTTAGTACTTATCTTATCAATGATGATATTGAGCTACGCTTGCATGGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATCTCTTCAAGCAAGCACAAACAGCTGGAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGAATTAGCAACCATCACTCATTGCCTAGAGACTACTTCAACGACTCGCAAGGAAATGACAACAGTAATGGCAATGGTGGAAGTGGGTAA

mRNA sequence

ATGAAGTTCTTAGTACTTATCTTATCAATGATGATATTGAGCTACGCTTGCATGGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATCTCTTCAAGCAAGCACAAACAGCTGGAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGAATTAGCAACCATCACTCATTGCCTAGAGACTACTTCAACGACTCGCAAGGAAATGACAACAGTAATGGCAATGGTGGAAGTGGGTAA

Coding sequence (CDS)

ATGAAGTTCTTAGTACTTATCTTATCAATGATGATATTGAGCTACGCTTGCATGGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATCTCTTCAAGCAAGCACAAACAGCTGGAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGAATTAGCAACCATCACTCATTGCCTAGAGACTACTTCAACGACTCGCAAGGAAATGACAACAGTAATGGCAATGGTGGAAGTGGGTAA

Protein sequence

MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESGISNHHSLPRDYFNDSQGNDNSNGNGGSG
Homology
BLAST of ClCG04G009180 vs. NCBI nr
Match: KAE8647398.1 (hypothetical protein Csa_003831 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MKFLVLILSMMILSY C ATSRRIALGGLHGQGNQY FKQAQ   ENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPRDYFNDSQGNDNSNGNGGSG 89
          +SNHHSLPR+YFN+SQGNDN NGNGGSG
Sbjct: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 88

BLAST of ClCG04G009180 vs. NCBI nr
Match: KAA0047240.1 (hypothetical protein E6C27_scaffold908G00330 [Cucumis melo var. makuwa] >TYK05876.1 hypothetical protein E5676_scaffold432G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MKFLVLILS MILSY C ATSRRIALGGLHGQGNQY FKQAQ   ENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSTMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPRDYFNDSQGNDNSNGNGGSG 89
          ISNHHSLPR+YFN+SQGNDN NGNGGSG
Sbjct: 61 ISNHHSLPREYFNNSQGNDNDNGNGGSG 88

BLAST of ClCG04G009180 vs. NCBI nr
Match: KAG6604413.1 (hypothetical protein SDJN03_05022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MKFLVLILSMMILSY C  TSRRIAL G H QGNQ+  KQA+TA EN SRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQAKTAEENKSRKSNFKHPESG 60

Query: 61 ISNHHSLPRDYFND----SQGNDNSNGN 85
          ISNHHSLPR+YFN+    SQGNDN +G+
Sbjct: 61 ISNHHSLPREYFNEKGGASQGNDNGSGS 88

BLAST of ClCG04G009180 vs. NCBI nr
Match: POO01696.1 (hypothetical protein TorRG33x02_024730 [Trema orientale])

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRK-SNFKHPES 60
          MK   LIL +M ++  C+A   R  LGG++GQ  +Y   + +T   N   K S+ K+PE 
Sbjct: 1  MKVAALILILM-MATTCLAAPLRGMLGGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYPER 60

Query: 61 GISNHHSLPRDYFNDSQGNDNSNGNGGS 88
           I+NHHS+PR Y+ND  GN   +G+  S
Sbjct: 61 NINNHHSIPRQYYNDKGGNSQGDGSDNS 87

BLAST of ClCG04G009180 vs. ExPASy TrEMBL
Match: A0A0A0KK82 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446330 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-33
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MKFLVLILSMMILSY C ATSRRIALGGLHGQGNQY FKQAQ   ENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPRDYFNDSQGNDNSNGNGGSG 89
          +SNHHSLPR+YFN+SQGNDN NGNGGSG
Sbjct: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 88

BLAST of ClCG04G009180 vs. ExPASy TrEMBL
Match: A0A5A7TVP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00070 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MKFLVLILS MILSY C ATSRRIALGGLHGQGNQY FKQAQ   ENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSTMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPRDYFNDSQGNDNSNGNGGSG 89
          ISNHHSLPR+YFN+SQGNDN NGNGGSG
Sbjct: 61 ISNHHSLPREYFNNSQGNDNDNGNGGSG 88

BLAST of ClCG04G009180 vs. ExPASy TrEMBL
Match: A0A7N2M795 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRKSNFKHPESG 60
          MK +VL L +M++S +C+A  RR  LGG++GQ  Q    Q + A E++  +S  ++P+S 
Sbjct: 1  MKLVVLFLVIMVVSSSCLAVPRRGMLGGIYGQ-EQLYHAQKRKAMEDSKEESKVEYPDSS 60

Query: 61 ISNHHSLPRDYFN----DSQGNDNSNGNGGSG 89
          I+NHH++PR  FN     SQG +  +  GG+G
Sbjct: 61 INNHHTIPRQNFNSGDGSSQGENGESNEGGNG 91

BLAST of ClCG04G009180 vs. ExPASy TrEMBL
Match: A0A2P5FV74 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024730 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYACMATSRRIALGGLHGQGNQYLFKQAQTAGENNSRK-SNFKHPES 60
          MK   LIL +M ++  C+A   R  LGG++GQ  +Y   + +T   N   K S+ K+PE 
Sbjct: 1  MKVAALILILM-MATTCLAAPLRGMLGGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYPER 60

Query: 61 GISNHHSLPRDYFNDSQGNDNSNGNGGS 88
           I+NHHS+PR Y+ND  GN   +G+  S
Sbjct: 61 NINNHHSIPRQYYNDKGGNSQGDGSDNS 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647398.11.4e-3288.64hypothetical protein Csa_003831 [Cucumis sativus][more]
KAA0047240.15.4e-3288.64hypothetical protein E6C27_scaffold908G00330 [Cucumis melo var. makuwa] >TYK0587... [more]
KAG6604413.13.1e-2476.14hypothetical protein SDJN03_05022, partial [Cucurbita argyrosperma subsp. sorori... [more]
POO01696.18.1e-0440.91hypothetical protein TorRG33x02_024730 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK826.8e-3388.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446330 PE=4 SV=1[more]
A0A5A7TVP92.6e-3288.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7N2M7956.0e-0540.22Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2P5FV743.9e-0440.91Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024730 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..88
NoneNo IPR availablePANTHERPTHR36040OS04G0188500 PROTEINcoord: 1..86
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G009180.1ClCG04G009180.1mRNA