ClCG04G009040 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G009040
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L12-like
Location	CG_Chr04: 23862150 .. 23862650 (-)
RNA-Seq Expression	ClCG04G009040
Synteny	ClCG04G009040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCAAGCTCGATCCTTCTCAGGTTGTCGATGTTTTCGTTCGAGTCACTGGAGGCGAGGTCGGAGCCGCCAGTTCTCTCGCCCCTAAAATCGGTCCTCTAGGTCTCTCCCCCAAGAAGATCGGAGAAGACATTGCCAAGGAGACGGCCAAGGAATGGAAGGGCCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAACGCGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCGGTGGAACCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCCAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATCCCTCAGGATTGA

mRNA sequence

ATGCCGCCCAAGCTCGATCCTTCTCAGGTTGTCGATGTTTTCGTTCGAGTCACTGGAGGCGAGGTCGGAGCCGCCAGTTCTCTCGCCCCTAAAATCGGTCCTCTAGGTCTCTCCCCCAAGAAGATCGGAGAAGACATTGCCAAGGAGACGGCCAAGGAATGGAAGGGCCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAACGCGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCGGTGGAACCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCCAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATCCCTCAGGATTGA

Coding sequence (CDS)

ATGCCGCCCAAGCTCGATCCTTCTCAGGTTGTCGATGTTTTCGTTCGAGTCACTGGAGGCGAGGTCGGAGCCGCCAGTTCTCTCGCCCCTAAAATCGGTCCTCTAGGTCTCTCCCCCAAGAAGATCGGAGAAGACATTGCCAAGGAGACGGCCAAGGAATGGAAGGGCCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTGGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAACGCGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATTGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCGGTGGAACCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCCAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATCCCTCAGGATTGA

Protein sequence

MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Homology

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BLAST of ClCG04G009040 vs. NCBI nr
Match: XP_022143990.1 (60S ribosomal protein L12-like [Momordica charantia])

HSP 1 Score: 321.2 bits (822), Expect = 5.1e-84
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

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BLAST of ClCG04G009040 vs. NCBI nr
Match: XP_038883892.1 (60S ribosomal protein L12-1-like [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

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BLAST of ClCG04G009040 vs. NCBI nr
Match: XP_004143249.1 (60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >XP_008449248.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >KAA0044012.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KAA0047260.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KGN48153.1 hypothetical protein Csa_003143 [Cucumis sativus] >TYK25128.1 60S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima] >XP_038903166.1 60S ribosomal protein L12-1 [Benincasa hispida] >KAG6580604.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017359.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

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BLAST of ClCG04G009040 vs. NCBI nr
Match: XP_004137822.1 (60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein Csa_001517 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

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BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot
Match: P50883 (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 298.9 bits (764), Expect = 3.6e-80
Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot
Match: Q9FF52 (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.1e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot
Match: Q9LFH5 (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.9e-80
Identity = 148/166 (89.16%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot
Match: O50003 (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.9e-79
Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAK+L GTVKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot
Match: P0CT83 (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.0e-64
Identity = 120/166 (72.29%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL
Match: A0A6J1CQD9 (60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL
Match: A0A1S3BLM0 (60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL
Match: A0A5D3DNF2 (60S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002530 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL
Match: A0A0A0KF33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL
Match: A0A6J1J2K8 (60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of ClCG04G009040 vs. TAIR 10
Match: AT2G37190.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-81
Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of ClCG04G009040 vs. TAIR 10
Match: AT5G60670.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 298.1 bits (762), Expect = 4.3e-81
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of ClCG04G009040 vs. TAIR 10
Match: AT3G53430.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-81
Identity = 148/166 (89.16%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+L GTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

The following BLAST results are available for this feature:

BLAST of ClCG04G009040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143990.1	5.1e-84	99.40	60S ribosomal protein L12-like [Momordica charantia]	[more]
XP_038883892.1	7.4e-83	98.19	60S ribosomal protein L12-1-like [Benincasa hispida]	[more]
XP_004143249.1	7.4e-83	98.19	60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S rib...	[more]
XP_022935531.1	2.1e-82	97.59	60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso...	[more]
XP_004137822.1	2.1e-82	97.59	60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein C...	[more]

BLAST of ClCG04G009040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P50883	3.6e-80	89.76	60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2	[more]
Q9FF52	6.1e-80	89.16	60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1	[more]
Q9LFH5	7.9e-80	89.16	60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1	[more]
O50003	3.9e-79	90.96	60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1	[more]
P0CT83	8.0e-64	72.29	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of ClCG04G009040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQD9	2.5e-84	99.40	60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE...	[more]
A0A1S3BLM0	3.6e-83	98.19	60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1	[more]
A0A5D3DNF2	3.6e-83	98.19	60S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KF33	3.6e-83	98.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1	[more]
A0A6J1J2K8	1.0e-82	97.59	60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=...	[more]

BLAST of ClCG04G009040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37190.1	2.5e-81	89.76	Ribosomal protein L11 family protein	[more]
AT5G60670.1	4.3e-81	89.16	Ribosomal protein L11 family protein	[more]
AT3G53430.1	5.6e-81	89.16	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 e-value: 2.6E-56 score: 203.0
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 15.401615
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 13..144 e-value: 9.51295E-52 score: 159.539
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 82..164 e-value: 7.6E-41 score: 140.2
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..149
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 1..81 e-value: 1.1E-34 score: 120.2
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..70 e-value: 1.8E-19 score: 69.3
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 e-value: 5.0E-16 score: 59.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..166
None	No IPR available	PANTHER	PTHR11661:SF27	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G009040.1	ClCG04G009040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome