ClCG04G008870 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G008870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 23731856 .. 23734032 (+)
RNA-Seq Expression	ClCG04G008870
Synteny	ClCG04G008870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCAACTTTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTATATTATCTCTTTAATTAGAATTTGAATAATTAATATTATATAATGGGTTATTGTAACTAATTTTTTTCTTTAATTTTTGTAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGTTAAAATTTTCATTTTCATTAATTCCCTTGTTTCTTTTTTCATTTATTAGTTAGGAATGTTTTCTCAAGTTTTGATTTTTTTTTTTTTTTTTTAAATTAAAAAGACAACTTTTTATTTTAGGGAACTTGTTTTCCTTGGTTGTCATTTTGTGATATTGAGGGAGATAATTAAATATCATAGCTTTTTTGGGGAGAAAAGAAGTTTGATGAAAGTATGAGAGTAAATAAAAGCGAGAACGTTTTTGCTTTTGTTTTTTAATCCACAAAAGAGTTTGGAAAACTATTCATGTCAAAAACTTTTTTTTTTAATTAAAATTATGTAGAAATTTTGGAAATATGCAATAAGATGTGAGTATGAGTTTTGTTTTTGTTTTTGTTTTTTTTATTTTCTATTTTTTGTTTTATTTTATTTGAAAAAGCATAAGAGTTTGGAAAAATATTCATGGTTTTTTGTTTTTTATTATTCAAAAACTTTTTAAAATTAAAATTGTGTAGAAACTTCGGAAATATGTAATAAGATCAAGCTTGTTTTCCTTTCTGTTTTAACTTTTTTTTTTTCAAAACATAAATAAGAGTATCATATTACCATTTTTTTACTTCTAAAATGTATAATAAATATTTATTAAAAAATGTATAATAATAAATATCATAAAAAATATATAGCATAAAAGTTTCCAGATATTTAACTTTAAAAACATAGTTTTTCAAGCAAAAATTTCAGAGGACAAAAACAAGAAAAAAAAAAAAAAGAGAGAGAGAGAGTAAACAATCATGTTTATTATTATTTTTTTTAAAAAAATAAAAAATAATTAGCAAGCACATTTATGTTTATCTTTACTAAAAAAAAATTAATCAACTAGATCTACTAGATGTCAATTTAAACATAACATCACGCATCACGGATCTAGGCATGTATATGTTTTTTCACACTCTTGTCGAATTATTGACCTTAAAAGAGAGCCTTAACTTTAGTGGTTAGTAATTAAAATATTCTATCTCAATAATTAATTGATTAAAATATTCTATCTCAATAATTAATTGATGTAGTTAATTAATATAACATTTGATGTGAATGGAAACTATATATTTTTATATATAAACTGAGATTTCTTTTGTTTTGTGTCCCTCAATTAAATTTTATAAGTGGGTAAAAAATTGTTTTCTTTTTTATGTGTTAGGTAATAATTATATGTTTAGTTTGTGACTTCATTACCCATTACAACCCTTTTTTCTATTTAATTTCTTTTAAGACTAACACGCTTTTGATTTTTTTTATTTTTTTTAGTCTAATTCCAGATTTGGAGAAAAAAAAATTAATGGGCTAAATATATGCTATGGCTTCCTAAAAAAAAAAAGAAAAAGAAAGTGTTGGATGGTTCCAAATTTCTTAAATAATTTTTTTTAGTATAACAAAGGTGTGAAATGAAATGGTTCATATAACATTTTATAATTATTTTCTAAAATATTTAGGCATGAGAATATATGACTTAGAGATGCTAATTAGCCTATTCGACACTATAAGTAGATAAAATGAAACAAGAAAATTCATAGGAAAAAATAGTTATAAACGCAATTTTTATAAATAAAGAGATTAAAAAAAATCAAATGATTATAAGTATCATACATATCATCATCCAACTTAGTATGTAATCTTGGATAAAAATGATTAATAATGATTAACTTTTTTGAACATTTGCTTAATTTAATGATTATTTATTTCATAAAATAAAGTATTGATTACCTTTAAGTATAATTTTCCAATTATTCTGTTTACTTGTGCAGGGAAGTAAAGTGGGTGCATGA

mRNA sequence

ATGGAGATCAACTTTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGGAAGTAAAGTGGGTGCATGA

Coding sequence (CDS)

ATGGAGATCAACTTTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGGAAGTAAAGTGGGTGCATGA

Protein sequence

MEINFITIIFFLFLLATPSFSSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPETHPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA

Homology

[Close]

BLAST of ClCG04G008870 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 9.3e-28
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 3   INFITIIFFLFLLATPSFSSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPETHPSHI 62
           I+F+T +FFLFLLATPS SS KGGSENG M+     SSSSSSSEVYEIDYRGPETH SHI
Sbjct: 4   ISFMT-MFFLFLLATPSLSSPKGGSENGEMD----FSSSSSSSEVYEIDYRGPETHSSHI 63

Query: 63  SPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSY-MKGSKVG 102
           SPPDHSHGRPWI HH QHQ QPKQ   KPD Y +KGSK G
Sbjct: 64  SPPDHSHGRPWINHHDQHQLQPKQPPFKPDPYPLKGSKAG 98

[Close]

BLAST of ClCG04G008870 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 65/105 (61.90%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   MEINFITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPET 60
           ME++F T +FF+FLL TPSF   SS +GGSENGGM          SSSEVYEIDYRGPET
Sbjct: 1   MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM---------GSSSEVYEIDYRGPET 60

Query: 61  HPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA 103
           H SHISPP HSHGRPWI+ HH+H   P      P   +KGSKVGA
Sbjct: 61  HSSHISPPHHSHGRPWIV-HHRHPLHP------PPYPLKGSKVGA 89

[Close]

BLAST of ClCG04G008870 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 65/105 (61.90%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MEINFITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPET 60
           ME+ F T +FF+FLL TPSF   SS +GGSENGGM          SSSEVYEIDYRGPET
Sbjct: 1   MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM---------GSSSEVYEIDYRGPET 60

Query: 61  HPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA 103
           H SHISPP HSHGRPWI+ HH+H   P      P   +KGSKVGA
Sbjct: 61  HSSHISPPHHSHGRPWIV-HHRHPLHP------PPYPLKGSKVGA 89

[Close]

BLAST of ClCG04G008870 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-20
Identity = 64/105 (60.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MEINFITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPET 60
           ME++F T +FFLFLL TPSF   SSS+GGSENGG+           SS+VYEIDYRGPET
Sbjct: 1   MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGL----------GSSQVYEIDYRGPET 60

Query: 61  HPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA 103
           H SHISPP  SHGRPWI+HHH H   P      P   +KGSKVGA
Sbjct: 61  HSSHISPPHPSHGRPWIVHHH-HPLHP------PPYPLKGSKVGA 88

[Close]

BLAST of ClCG04G008870 vs. NCBI nr
Match: KAA0047279.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 3   INFITIIFFLFLLATPSFSSSKGGS---ENGGMESSSSSSSSSSSSEVYEIDYRGPETHP 62
           +NF+T +FFLFLLATPS +SS+GGS    NGG++   SSSSS     VYEIDYRGPETH 
Sbjct: 4   VNFMTTMFFLFLLATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGPETHS 63

Query: 63  S-HISPPDHSHG-RPWIIHHHQHQ-FQPKQ--SSLKP 92
           S HISPPDHSHG RPWIIHHH HQ  QPKQ  +SL P
Sbjct: 64  SHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNP 100

[Close]

BLAST of ClCG04G008870 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.9e-21
Identity = 65/105 (61.90%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   MEINFITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPET 60
           ME++F T +FF+FLL TPSF   SS +GGSENGGM          SSSEVYEIDYRGPET
Sbjct: 1   MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM---------GSSSEVYEIDYRGPET 60

Query: 61  HPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA 103
           H SHISPP HSHGRPWI+ HH+H   P      P   +KGSKVGA
Sbjct: 61  HSSHISPPHHSHGRPWIV-HHRHPLHP------PPYPLKGSKVGA 89

[Close]

BLAST of ClCG04G008870 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 64/105 (60.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MEINFITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPET 60
           ME++F T +FFLFLL TPSF   SSS+GGSENGG+           SS+VYEIDYRGPET
Sbjct: 1   MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGL----------GSSQVYEIDYRGPET 60

Query: 61  HPSHISPPDHSHGRPWIIHHHQHQFQPKQSSLKPDSYMKGSKVGA 103
           H SHISPP  SHGRPWI+HHH H   P      P   +KGSKVGA
Sbjct: 61  HSSHISPPHPSHGRPWIVHHH-HPLHP------PPYPLKGSKVGA 88

[Close]

BLAST of ClCG04G008870 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 3   INFITIIFFLFLLATPSFSSSKGGS---ENGGMESSSSSSSSSSSSEVYEIDYRGPETHP 62
           +NF+T +FFLFLLATPS +SS+GGS    NGG++   SSSSS     VYEIDYRGPETH 
Sbjct: 4   VNFMTTMFFLFLLATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGPETHS 63

Query: 63  S-HISPPDHSHG-RPWIIHHHQHQ-FQPKQ--SSLKP 92
           S HISPPDHSHG RPWIIHHH HQ  QPKQ  +SL P
Sbjct: 64  SHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNP 100

[Close]

BLAST of ClCG04G008870 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 62/101 (61.39%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 6   ITIIFFLFLLATPSFSSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPETHPSHISPP 65
           IT  F   +LATPS SSSKGGSENG ME          SSEVYEIDYRGPETH SH SPP
Sbjct: 9   ITFFFLFLILATPSISSSKGGSENGAME---------ISSEVYEIDYRGPETHSSHFSPP 68

Query: 66  D-HSHGRPWIIHHHQHQFQPKQSSLKPDSYMKG---SKVGA 103
           D HSHGRPWIIHH     QPK  SL P    +     KVGA
Sbjct: 69  DHHSHGRPWIIHH-----QPKLHSLNPSPNSRKVSCKKVGA 95

[Close]

BLAST of ClCG04G008870 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 3  INFITIIFFLFLL-ATPSFSSSKGGSENGGMESSSSSSSSSSSSEVYEIDYRGPETHPS- 62
          +NF+T +FFLFLL ATPS SSSKG         +S +S+      VYEIDYRGPETH S 
Sbjct: 4  VNFMTTMFFLFLLAATPSLSSSKG--------RASENSNGGIDDIVYEIDYRGPETHSSH 63

Query: 63 HISPPDHSHG-RPWIIHHHQHQ-FQPKQ-SSLKP 92
          HISPPDHSHG RPWIIHHH+HQ  QPKQ +SL P
Sbjct: 64 HISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDP 89

[Close]

BLAST of ClCG04G008870 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 37 SSSSSSSSSEVYEIDYRGPETHPSHISPPDHSHGRPWIIHHH 79
          +  S  + SEVYEIDYRGPETH S   PP+  HG+P  IHH+
Sbjct: 22 AKGSEQTDSEVYEIDYRGPETHNSR-PPPETMHGKPPYIHHN 62

The following BLAST results are available for this feature:

BLAST of ClCG04G008870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881428.1	9.3e-28	76.00	uncharacterized protein LOC120072958 [Benincasa hispida]	[more]
XP_022925989.1	1.4e-20	61.90	uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet...	[more]
KAG6604438.1	1.9e-20	61.90	hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979166.1	5.5e-20	60.95	uncharacterized protein LOC111478885 [Cucurbita maxima]	[more]
KAA0047279.1	9.3e-20	68.04	putative transmembrane protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG04G008870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G008870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDR4	6.9e-21	61.90	uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IQ06	2.6e-20	60.95	uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885...	[more]
A0A5A7U1B9	4.5e-20	68.04	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1CPX6	1.2e-17	61.39	uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0KIB6	1.3e-14	63.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1	[more]

BLAST of ClCG04G008870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03120.1	1.2e-04	57.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G008870.1	ClCG04G008870.1	mRNA