ClCG04G008480 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G008480
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDiaminopimelate epimerase
LocationCG_Chr04: 23406952 .. 23410482 (-)
RNA-Seq ExpressionClCG04G008480
SyntenyClCG04G008480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCAATTCTCACCAACGACGACTTCTTTCCCCGTGGAACCTCCTCAACAGCTCATCTCTCCCGGCTTCTCTGTTGCTTTGCTTCAGCTCACCGAAGCGGGAAGTTCGTACTCCTACACCACAGCGCCGCCATGGCCATAGCCGCCACCATTTCTCTTCCACTTACCTCTCCCTCTCCACGCTTTCTCGCCTCATTTTCTTCTCTCCGATTCTCTTTTACTTCCACGCTTCAACTGGGTTCCCTTTCGAAGTATTCCGCTCGGAGAAGAAGCCCTAGGCTCTCCGTCTCCGCGTCTTCCGCTGGCCTTGAAGTTACGGAGAAAGTGTCGTCGTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTAATCACTCTTTGAGTTTACTGTTACGTATGTTTTTTATTTTGAAATTGGCTGTAACTAAAGCTTATCTGTTTGAAATGGTGGAAGTCTGAAATCTTTACTTGATATCTTAACTTTCTGCCGTTGACTCCGGTGATGTTACTCATGGAAAATGATACAGATTTTAATAAGAAACTAATTGGAAAGCTTTATCGGACAGTTTTCTCTCCATGCAGGGAAATAGTTTCATTCATTGTCAGCTAATCAGTCTACGCTTGTTTCTTAGTCTGGTATTGATTGCAATTGAGCTTGAATAGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGACGGAGTTATCTTTGCTATGCCGGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCTGAGGTAGTAAATTTTTTAATTTTCATAAATAAATTTCTGTGGCTGTTGTTATATTTCTATCAATTACAGTCTGAATTATTTTGCGCTTGTATCTTATAGATGTGTGGTAATGGAGTACGGTGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGGCATAGGTAGATCTTTCTGTTTTACTATTGTTTTATCTTTTGAGGCCATTTGTGCATACCTTCTTGTGAATATCAACGTAGTATATCCCTGTCAATACACAATTAAAATTTAACTTTCTGTATTAAGATTCAAAAAATGAGCGTTTGCTTTAGATTCCTGGTCCTGGGCTTAGAAATCTGTTTCCTTGGGTAGTTTAGATATGAAACTAATTTAATTATGATACCTAAGGTCTTTTGTTTCATGTATATTTATGCATTCAAATTTCTGACCGCAGCGTTTGTGTTCATACTCTTGCAGTTTCACTGTTCATACTGGTGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTATACTTCGATAGATTCTCTAATCTAAAGTCAACTGCTGTTTCAATTTTTTAGAAAACTTGGGAAGCAGTTTGGGAGGTTGTTGGTTGTTAGGTTATTGCTTCTCTTTGGGCATCGTTCATTGGGCTTCTTGTAATTATCAGCTTTGTTTTGATCCTTTGGATTGAAGGCCCTTCTTGTAGTTAGTTTGGAGATCTCTTTTGTGGGCCTGTCTATTGTATTCTCTTGTACGTTCTTTCATTTTTCTCCATCAAATTGTGGGTTCTTCCGCATTTTTAATTACCTTTTAAAGGCTTATTATACCATTTTTTCATTGGCAAATGCAATCAGATGTGCCTACCCGATCTTAACGTATATGCAATTTCAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGATGTGCCTACCCGATTGACACCAACTTCAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCTCATTGTGTAACTTTTGGCAATAAAACTGAGCAGGTATTTGTTTAGAAGTACATTTTGCAACATCCCATTCACTCTTCGAAATCTTTTTAAAGTTCCTAATGTGGATTACTGTGGCTTGCCCTTGTGTTTTCTTTTTTCTTACTTAAATATAATCACTTAGCAAGTTGTATATATTGTGTACGTGATTTAGTAGATTAGAGACGATGAGTTACACTTTAATATTAAGTAAAAGAATTTGTGAGTACTTTGTAGGCTCCATAAATACATATGTTGTATTTATCATAATTTAGTTGATTGATTGAGATGTGTTCAATGTTGTAATATTAGATATAGCCTACAAGTGCCTTTATGAACCAATGAGTACAATTAAGTTAAGAAGCAATTCAAAGTTATGAGGAAGCCTCTGGTGATGGCTATGCTCCTCTGACATTTAAATCATTTTTTTCCTCCTTCGATCTAAAATAGCTTACAGCAGTCTAAACTCGGCAATCCAACTTCATAGAGTCTTGAGTTACATTTGACTGTCTATAGTCATTCTGTTGGAGTACAAGTACAATTTTACCGTTCATTTACTATTTGTGCTGACTTTAGCAAGGTGATGAACAGAATCTGCAGGTCGATGACATAAACTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACGGGTTGGTTTTTTAGCAAGTTTGAAATTTCAGCTTTTTGTGGTTGAGATGTATATCTTTGAGCAAATGTGATATTTTCCAACCATTTAAAGGGTCTTCCCTTCCCTTTCTACGGATGTAATCTTTTTACTTTTATGTTTACTGAGATGCTCCTTTTACCCTGCTCCTACAGAATTTGTGCAAGTCTTCTCCAATTCGCACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGTTCAAAATTAATATAATTTAAGATAATTTAAAGTTACAAGCATATATATATTGTACCACTTCATAAAAAACATGTGTACTTCTCAATGATGCTACAGGTGCGACACTTGCTTGTGGAACCGGAGCCTGTGCAGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGGTAAGAAGATCATGTGCATCTTTTAACCTCAACAGCAATAATATAATTTAGTTTCATCAATATAATCACACAGTATGGTTATATAAACAGAAAAAAAACAAAAACGATGCAAATTTCAATCCTTTATTTGCTTTAATTTCCTAACGTTAGATTCAAATATCTCGAGACAGAATTGCACTGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAAGACAACCACGTATACATGACTGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAAAAGCAACCTAAAGAATCAGGACAAAAGCAACTGTCAAATTTTGGCCTCTCAGCCGGTAGGTGGTAATTTATGAAAATGTATCTTCTGTTTGTACTTCCATTATTCTGTAATGCACAATATCTGTTCTGTGTGAATTACAATTGTCTTCTGTTTCTTCAGAATAAAATTAATTTCTTTTGTCTTTGCATTTGTACTGAATCAGTGTGAATATCTGTTCTGTGTGAATTAATTGTCTTCTGTT

mRNA sequence

ATGGTCCAATTCTCACCAACGACGACTTCTTTCCCCGTGGAACCTCCTCAACAGCTCATCTCTCCCGGCTTCTCTGTTGCTTTGCTTCAGCTCACCGAAGCGGGAACCGCCACCATTTCTCTTCCACTTACCTCTCCCTCTCCACGCTTTCTCGCCTCATTTTCTTCTCTCCGATTCTCTTTTACTTCCACGCTTCAACTGGGTTCCCTTTCGAAGTATTCCGCTCGGAGAAGAAGCCCTAGGCTCTCCGTCTCCGCGTCTTCCGCTGGCCTTGAAGTTACGGAGAAAGTGTCGTCGTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGACGGAGTTATCTTTGCTATGCCGGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCTGAGATGTGTGGTAATGGAGTACGGTGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGGCATAGTTTCACTGTTCATACTGGTGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGATGTGCCTACCCGATTGACACCAACTTCAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCTCATTGTGTAACTTTTGGCAATAAAACTGAGCAGCAAGGTGATGAACAGAATCTGCAGGTCGATGACATAAACTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACGGGTTGGTTTTTTAGCAAGTTTGAAATTTCAGCTTTTTGTGAATTTGTGCAAGTCTTCTCCAATTCGCACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGTGCGACACTTGCTTGTGGAACCGGAGCCTGTGCAGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGAATTGCACTGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAAGACAACCACGTATACATGACTGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAAAAGCAACCTAAAGAATCAGGACAAAAGCAACTGTCAAATTTTGGCCTCTCAGCCGGTAGGTGGTAATTTATGAAAATGTATCTTCTGTTTGTACTTCCATTATTCTGTAATGCACAATATCTGTTCTGTGTGAATTACAATTGTCTTCTGTTTCTTCAGAATAAAATTAATTTCTTTTGTCTTTGCATTTGTACTGAATCAGTGTGAATATCTGTTCTGTGTGAATTAATTGTCTTCTGTT

Coding sequence (CDS)

ATGGTCCAATTCTCACCAACGACGACTTCTTTCCCCGTGGAACCTCCTCAACAGCTCATCTCTCCCGGCTTCTCTGTTGCTTTGCTTCAGCTCACCGAAGCGGGAACCGCCACCATTTCTCTTCCACTTACCTCTCCCTCTCCACGCTTTCTCGCCTCATTTTCTTCTCTCCGATTCTCTTTTACTTCCACGCTTCAACTGGGTTCCCTTTCGAAGTATTCCGCTCGGAGAAGAAGCCCTAGGCTCTCCGTCTCCGCGTCTTCCGCTGGCCTTGAAGTTACGGAGAAAGTGTCGTCGTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGACGGAGTTATCTTTGCTATGCCGGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCTGAGATGTGTGGTAATGGAGTACGGTGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGGCATAGTTTCACTGTTCATACTGGTGCTGGTCTTATTATTCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGATGTGCCTACCCGATTGACACCAACTTCAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCTCATTGTGTAACTTTTGGCAATAAAACTGAGCAGCAAGGTGATGAACAGAATCTGCAGGTCGATGACATAAACTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACGGGTTGGTTTTTTAGCAAGTTTGAAATTTCAGCTTTTTGTGAATTTGTGCAAGTCTTCTCCAATTCGCACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGTGCGACACTTGCTTGTGGAACCGGAGCCTGTGCAGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGAATTGCACTGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAAGACAACCACGTATACATGACTGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAA

Protein sequence

MVQFSPTTTSFPVEPPQQLISPGFSVALLQLTEAGTATISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKVSSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPLQ
Homology
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BLAST of ClCG04G008480 vs. NCBI nr
Match: XP_022977248.1 (diaminopimelate epimerase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 674.5 bits (1739), Expect = 5.9e-190
Identity = 353/417 (84.65%), Postives = 362/417 (86.81%), Query Frame = 0 

Query: 5   SPTTTSFP-VEPPQQLI----SP--GFSVALLQLTEAGTATISLPLTSPSPRFLASFSSL 64
           SPTTTSFP V  P  L+    SP  G S    Q   A + TISLP TSPS R LAS S L
Sbjct: 4   SPTTTSFPVVYAPTSLLRCFCSPKRGVSTPTPQAAMAISTTISLPFTSPSRRSLASISFL 63

Query: 65  RFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKVSSLSFLDRRESGLLHFVKYH 124
           R S +STLQL SLSKYSARRRSPRLSVSASSAGLEVTEK  S SFLDRRESGLLHFVKYH
Sbjct: 64  RSSVSSTLQLDSLSKYSARRRSPRLSVSASSAGLEVTEKALSSSFLDRRESGLLHFVKYH 123

Query: 125 GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDG 184
           GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFA+PGVNGTDYTMRIFNSDG
Sbjct: 124 GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFALPGVNGTDYTMRIFNSDG 183

Query: 185 SEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKAS 244
           SEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGAGLI+P+LQD+G VKVDMGEPILKAS
Sbjct: 184 SEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIVPQLQDNGLVKVDMGEPILKAS 243

Query: 245 DVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVDDIN 304
           DVPTRLTP  DQSVVK+DIEVDGVAWSVTCVSMGNPHCVTFGNK      EQNLQVDDIN
Sbjct: 244 DVPTRLTPNKDQSVVKSDIEVDGVAWSVTCVSMGNPHCVTFGNKI-----EQNLQVDDIN 303

Query: 305 LAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATLACG 364
           LAAIGPKFEHHEMFPARTNT             EFVQVFSNSHLKMRVWERGAGATLACG
Sbjct: 304 LAAIGPKFEHHEMFPARTNT-------------EFVQVFSNSHLKMRVWERGAGATLACG 363

Query: 365 TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPLQ 415
           TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQ NHVYMTGPAEVVFYGSVPLQ
Sbjct: 364 TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQANHVYMTGPAEVVFYGSVPLQ 402

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BLAST of ClCG04G008480 vs. NCBI nr
Match: XP_008447504.1 (PREDICTED: diaminopimelate epimerase, chloroplastic [Cucumis melo] >KAA0047342.1 diaminopimelate epimerase [Cucumis melo var. makuwa])

HSP 1 Score: 670.6 bits (1729), Expect = 8.6e-189
Identity = 341/376 (90.69%), Postives = 343/376 (91.22%), Query Frame = 0 

Query: 38  TISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKV 97
           TISLPLTSPS R LAS  SLR SFTSTLQL SL KY ARRRSPRLSVSASSAGLEVTEK 
Sbjct: 6   TISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLEVTEKA 65

Query: 98  SSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 157
            SLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI
Sbjct: 66  PSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 125

Query: 158 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 217
           FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP
Sbjct: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 185

Query: 218 ELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVT 277
           ELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGNPHCVT
Sbjct: 186 ELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVT 245

Query: 278 FGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFS 337
           FGNK      EQNLQV+DINLAAIGPKFEHHEMFPARTNT             EFVQV S
Sbjct: 246 FGNKI-----EQNLQVEDINLAAIGPKFEHHEMFPARTNT-------------EFVQVLS 305

Query: 338 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 397
           NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV
Sbjct: 306 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 363

Query: 398 YMTGPAEVVFYGSVPL 414
           YMTGPAEVVFYGSVPL
Sbjct: 366 YMTGPAEVVFYGSVPL 363

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BLAST of ClCG04G008480 vs. NCBI nr
Match: XP_038880931.1 (diaminopimelate epimerase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 669.8 bits (1727), Expect = 1.5e-188
Identity = 338/377 (89.66%), Postives = 346/377 (91.78%), Query Frame = 0 

Query: 38  TISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKV 97
           TIS PLTSPSPR LASF SLR SF+STLQL SLSK+SA+RRSPRL++SASSAGLEVTEK 
Sbjct: 6   TISFPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKHSAQRRSPRLTISASSAGLEVTEKA 65

Query: 98  SSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 157
            S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI
Sbjct: 66  PSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 125

Query: 158 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 217
           FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG HSFTVHTGAGLIIP
Sbjct: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFTVHTGAGLIIP 185

Query: 218 ELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVT 277
           ELQD+GQVKVDMGEPILKASDVPTRL PT+DQSVVKADIEVDGVAWSVTCVSMGNPHCVT
Sbjct: 186 ELQDNGQVKVDMGEPILKASDVPTRLAPTTDQSVVKADIEVDGVAWSVTCVSMGNPHCVT 245

Query: 278 FGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFS 337
           FGNK      +QNLQVDDINLAAIGPKFEHH MFPARTNT             EFVQVFS
Sbjct: 246 FGNKI-----DQNLQVDDINLAAIGPKFEHHVMFPARTNT-------------EFVQVFS 305

Query: 338 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 397
           NSHLKMRVWERGAGATLACGTGACAVVVAAVLEG AGRNCTVDLPGGPLQIEWSEQDNHV
Sbjct: 306 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGHAGRNCTVDLPGGPLQIEWSEQDNHV 364

Query: 398 YMTGPAEVVFYGSVPLQ 415
           YMTGPAEVVFYGSVPLQ
Sbjct: 366 YMTGPAEVVFYGSVPLQ 364

[Close]
BLAST of ClCG04G008480 vs. NCBI nr
Match: XP_004142088.1 (diaminopimelate epimerase, chloroplastic [Cucumis sativus] >KGN54221.1 hypothetical protein Csa_017980 [Cucumis sativus])

HSP 1 Score: 663.7 bits (1711), Expect = 1.0e-186
Identity = 337/376 (89.63%), Postives = 341/376 (90.69%), Query Frame = 0 

Query: 39  ISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKVS 98
           ISLPLTSPS R LAS  SLR SFTS+LQL SL KYSAR RSPRLSVSA+SAGLEVTEK  
Sbjct: 7   ISLPLTSPSSRSLASIPSLRLSFTSSLQLDSLPKYSARGRSPRLSVSATSAGLEVTEKAP 66

Query: 99  SLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF 158
           S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF
Sbjct: 67  SFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF 126

Query: 159 AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE 218
           AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE
Sbjct: 127 AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE 186

Query: 219 LQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTF 278
           LQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGNPHCVTF
Sbjct: 187 LQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVTF 246

Query: 279 GNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSN 338
            NK      EQNLQVD INLAAIGPKFEHHEMFPARTNT             EFVQV SN
Sbjct: 247 SNKI-----EQNLQVDGINLAAIGPKFEHHEMFPARTNT-------------EFVQVLSN 306

Query: 339 SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVY 398
           SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSE+DNHVY
Sbjct: 307 SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVY 364

Query: 399 MTGPAEVVFYGSVPLQ 415
           MTGPAEVVFYGSVPLQ
Sbjct: 367 MTGPAEVVFYGSVPLQ 364

[Close]
BLAST of ClCG04G008480 vs. NCBI nr
Match: XP_023544386.1 (diaminopimelate epimerase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 662.9 bits (1709), Expect = 1.8e-186
Identity = 351/420 (83.57%), Postives = 359/420 (85.48%), Query Frame = 0 

Query: 5   SPTTTSFP-VEPPQQLI----SP--GFSVALLQLTEAGTATISLPLTSPSPRFLASFSSL 64
           S TTT FP V  P  L+    SP    S    Q   A  ATISLPLTSPS R LAS SSL
Sbjct: 4   SATTTPFPVVYAPTSLLRCFCSPKREVSTPTPQAAMAIAATISLPLTSPSRRSLASISSL 63

Query: 65  RFSFTSTLQLGSLSKYSARRRSPRLSV---SASSAGLEVTEKVSSLSFLDRRESGLLHFV 124
           R S  STLQL S SKYSARRRSPRLSV   SASSAGLEVTEK  S SFLDRRESGLLHFV
Sbjct: 64  RSSVASTLQLDSFSKYSARRRSPRLSVSASSASSAGLEVTEKALSSSFLDRRESGLLHFV 123

Query: 125 KYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFN 184
           KYHGLGNDFILVDNRDSSEPRITP QAAKLCDRNFGIGADGVIFA+PGVNGTDYTMRIFN
Sbjct: 124 KYHGLGNDFILVDNRDSSEPRITPGQAAKLCDRNFGIGADGVIFALPGVNGTDYTMRIFN 183

Query: 185 SDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPIL 244
           SDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGAGLI+P+LQD+G VKVDMGEPIL
Sbjct: 184 SDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIVPQLQDNGLVKVDMGEPIL 243

Query: 245 KASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVD 304
           KASDVPTRLTP +DQSVVKA+IEVDGVAWSVTCVSMGNPHCVTFGNK      EQNLQVD
Sbjct: 244 KASDVPTRLTPNTDQSVVKAEIEVDGVAWSVTCVSMGNPHCVTFGNKI-----EQNLQVD 303

Query: 305 DINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATL 364
           DINLAAIGPKFEHHEMFPARTNT             EFVQVFSNSHLKMRVWERGAGATL
Sbjct: 304 DINLAAIGPKFEHHEMFPARTNT-------------EFVQVFSNSHLKMRVWERGAGATL 363

Query: 365 ACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPLQ 415
           ACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE VFYGSVPLQ
Sbjct: 364 ACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEAVFYGSVPLQ 405

[Close]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match: Q9LFG2 (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF PE=1 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 5.3e-149
Identity = 264/378 (69.84%), Postives = 302/378 (79.89%), Query Frame = 0 

Query: 37  ATISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVT-E 96
           A +S    +P  R +++  S      S+L  G   K     +SP L VSA+++   VT E
Sbjct: 4   AAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEKEYC-FKSPSLRVSAAASMDAVTAE 63

Query: 97  KVSSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADG 156
           K S  SFLD++E+G+LHFVKYHGLGNDFILVDNRDSSEP+IT EQAAKLCDRNFG+GADG
Sbjct: 64  KFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADG 123

Query: 157 VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLI 216
           VIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENLQG+HSFT+HTGAGLI
Sbjct: 124 VIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLI 183

Query: 217 IPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHC 276
           +PE+QDDGQVKVDMG PILKA DVPT+L+    ++VV+A++ VDGV+W+VTCVSMGNPHC
Sbjct: 184 VPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHC 243

Query: 277 VTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQV 336
           +TFG K        NL+VDD+NL  IGPKFEHHEMFPARTNT             EFV+V
Sbjct: 244 ITFGKK-----GGPNLKVDDLNLPEIGPKFEHHEMFPARTNT-------------EFVEV 303

Query: 337 FSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDN 396
            S SHLKMRVWERGAGATLACGTGACA+VVAAVLEGRA R CTVDLPGGPL+IEW ++DN
Sbjct: 304 LSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDN 362

Query: 397 HVYMTGPAEVVFYGSVPL 414
           H+YMTGPAE VFYGS  L
Sbjct: 364 HIYMTGPAEAVFYGSALL 362

[Close]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match: Q2QNF7 (Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPF PE=2 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 2.7e-137
Identity = 235/335 (70.15%), Postives = 268/335 (80.00%), Query Frame = 0 

Query: 77  RRSPRLSVSASSAGLEVTEKVSSLSFLDRRES-GLLHFVKYHGLGNDFILVDNRDSSEPR 136
           R +P      ++  +      ++ +FL+RRES   LHFVKY GLGNDFI+VDNRDS+ P+
Sbjct: 35  RGNPTARRCVAAMAVSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPK 94

Query: 137 ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIA 196
           +TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIA
Sbjct: 95  VTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 154

Query: 197 ELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKAD 256
           ELENLQG HSF +HTGAGLIIPE+Q+DG+VKVDMG+PIL   D+PT+L  T +++VV+AD
Sbjct: 155 ELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQAD 214

Query: 257 IEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPART 316
           + VDG  W VTCVSMGNPHCVTFG K     + + L VDD+ L+ IGPKFEHHEMFPART
Sbjct: 215 LAVDGSTWQVTCVSMGNPHCVTFGTK-----ELKVLHVDDLKLSDIGPKFEHHEMFPART 274

Query: 317 NTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGR 376
           NT             EFV+V S SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRA R
Sbjct: 275 NT-------------EFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAER 334

Query: 377 NCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 411
            C VDLPGGPL+IEW E DNH+YMTGPAE VFYGS
Sbjct: 335 KCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 351

[Close]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match: A2ZLS4 (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=DAPF PE=3 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 6.0e-137
Identity = 234/335 (69.85%), Postives = 268/335 (80.00%), Query Frame = 0 

Query: 77  RRSPRLSVSASSAGLEVTEKVSSLSFLDRRES-GLLHFVKYHGLGNDFILVDNRDSSEPR 136
           R +P      ++  +      ++ +FL+RRES   LHFVKY GLGNDFI++DNRDS+ P+
Sbjct: 38  RGNPTARRCVAAMAVSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPK 97

Query: 137 ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIA 196
           +TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIA
Sbjct: 98  VTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 157

Query: 197 ELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKAD 256
           ELENLQG HSF +HTGAGLIIPE+Q+DG+VKVDMG+PIL   D+PT+L  T +++VV+AD
Sbjct: 158 ELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQAD 217

Query: 257 IEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPART 316
           + VDG  W VTCVSMGNPHCVTFG K     + + L VDD+ L+ IGPKFEHHEMFPART
Sbjct: 218 LAVDGSTWQVTCVSMGNPHCVTFGTK-----ELKVLHVDDLKLSDIGPKFEHHEMFPART 277

Query: 317 NTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGR 376
           NT             EFV+V S SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRA R
Sbjct: 278 NT-------------EFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAER 337

Query: 377 NCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 411
            C VDLPGGPL+IEW E DNH+YMTGPAE VFYGS
Sbjct: 338 KCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354

[Close]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match: P74667 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=dapF PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.5e-103
Identity = 186/303 (61.39%), Postives = 219/303 (72.28%), Query Frame = 0 

Query: 111 LHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 170
           L F KYHGLGNDFILVDNR S+EP +TP+QA +LCDR+FGIGADGVIFA+PG  GTDYTM
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62

Query: 171 RIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMG 230
           RIFNSDGSEPEMCGNG+RC A+F+A+LE ++ + ++ +HT AG+I P+L  DGQVKVDMG
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMG 122

Query: 231 EPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQN 290
           EP L A  +PT L P  ++ VV   + V G  W+VTCVSMGNPHC+TF +          
Sbjct: 123 EPQLLAELIPTTLAPAGEK-VVDLPLAVAGQTWAVTCVSMGNPHCLTFVD---------- 182

Query: 291 LQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGA 350
             VD +NL  IGP FEHH  F  RTNT             EF+QV  +  LKMRVWERGA
Sbjct: 183 -DVDSLNLTEIGPLFEHHPQFSQRTNT-------------EFIQVLGSDRLKMRVWERGA 242

Query: 351 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 410
           G TLACGTGACA VVAAVL GR  R CTV+LPGG L+IEWS QDN +YMTGPA+ VF G 
Sbjct: 243 GITLACGTGACATVVAAVLTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQ 279

Query: 411 VPL 414
             +
Sbjct: 303 AEI 279

[Close]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match: Q8YVD0 (Diaminopimelate epimerase 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=dapF1 PE=3 SV=2)

HSP 1 Score: 374.0 bits (959), Expect = 2.2e-102
Identity = 183/302 (60.60%), Postives = 217/302 (71.85%), Query Frame = 0 

Query: 111 LHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 170
           + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3   IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 62

Query: 171 RIFNSDGSEPEMCGNGVRCFARFIAELENL-QGRHSFTVHTGAGLIIPELQDDGQVKVDM 230
           RIFNSDGSEPEMCGNG+RC A F+A+LE L + + ++ +HT AG+I P+L  DGQ+KVDM
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDM 122

Query: 231 GEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQ 290
           G P L A ++PT L   +D  V+   +EV+G  W VTCVSMGNPHC+TF           
Sbjct: 123 GLPRLLAGEIPTTL-GAADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE--------- 182

Query: 291 NLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERG 350
              V  I L  IGPKFEHH  FP RTNT             EF+QV S  +LKMRVWERG
Sbjct: 183 --DVAAIPLEIIGPKFEHHPAFPQRTNT-------------EFIQVVSRDYLKMRVWERG 242

Query: 351 AGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYG 410
           AG TLACGTGACA +VAAVL GR+ R  TV+LPGGPL+IEWSE D  +YMTGPA+ VF G
Sbjct: 243 AGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTG 279

Query: 411 SV 412
            +
Sbjct: 303 KL 279

[Close]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match: A0A6J1IPE7 (Diaminopimelate epimerase OS=Cucurbita maxima OX=3661 GN=LOC111477617 PE=3 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 2.9e-190
Identity = 353/417 (84.65%), Postives = 362/417 (86.81%), Query Frame = 0 

Query: 5   SPTTTSFP-VEPPQQLI----SP--GFSVALLQLTEAGTATISLPLTSPSPRFLASFSSL 64
           SPTTTSFP V  P  L+    SP  G S    Q   A + TISLP TSPS R LAS S L
Sbjct: 4   SPTTTSFPVVYAPTSLLRCFCSPKRGVSTPTPQAAMAISTTISLPFTSPSRRSLASISFL 63

Query: 65  RFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKVSSLSFLDRRESGLLHFVKYH 124
           R S +STLQL SLSKYSARRRSPRLSVSASSAGLEVTEK  S SFLDRRESGLLHFVKYH
Sbjct: 64  RSSVSSTLQLDSLSKYSARRRSPRLSVSASSAGLEVTEKALSSSFLDRRESGLLHFVKYH 123

Query: 125 GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDG 184
           GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFA+PGVNGTDYTMRIFNSDG
Sbjct: 124 GLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFALPGVNGTDYTMRIFNSDG 183

Query: 185 SEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKAS 244
           SEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGAGLI+P+LQD+G VKVDMGEPILKAS
Sbjct: 184 SEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIVPQLQDNGLVKVDMGEPILKAS 243

Query: 245 DVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKTEQQGDEQNLQVDDIN 304
           DVPTRLTP  DQSVVK+DIEVDGVAWSVTCVSMGNPHCVTFGNK      EQNLQVDDIN
Sbjct: 244 DVPTRLTPNKDQSVVKSDIEVDGVAWSVTCVSMGNPHCVTFGNKI-----EQNLQVDDIN 303

Query: 305 LAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSNSHLKMRVWERGAGATLACG 364
           LAAIGPKFEHHEMFPARTNT             EFVQVFSNSHLKMRVWERGAGATLACG
Sbjct: 304 LAAIGPKFEHHEMFPARTNT-------------EFVQVFSNSHLKMRVWERGAGATLACG 363

Query: 365 TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPLQ 415
           TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQ NHVYMTGPAEVVFYGSVPLQ
Sbjct: 364 TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQANHVYMTGPAEVVFYGSVPLQ 402

[Close]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match: A0A5A7TV60 (Diaminopimelate epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001640 PE=3 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 4.1e-189
Identity = 341/376 (90.69%), Postives = 343/376 (91.22%), Query Frame = 0 

Query: 38  TISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKV 97
           TISLPLTSPS R LAS  SLR SFTSTLQL SL KY ARRRSPRLSVSASSAGLEVTEK 
Sbjct: 6   TISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLEVTEKA 65

Query: 98  SSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 157
            SLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI
Sbjct: 66  PSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 125

Query: 158 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 217
           FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP
Sbjct: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 185

Query: 218 ELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVT 277
           ELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGNPHCVT
Sbjct: 186 ELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVT 245

Query: 278 FGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFS 337
           FGNK      EQNLQV+DINLAAIGPKFEHHEMFPARTNT             EFVQV S
Sbjct: 246 FGNKI-----EQNLQVEDINLAAIGPKFEHHEMFPARTNT-------------EFVQVLS 305

Query: 338 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 397
           NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV
Sbjct: 306 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 363

Query: 398 YMTGPAEVVFYGSVPL 414
           YMTGPAEVVFYGSVPL
Sbjct: 366 YMTGPAEVVFYGSVPL 363

[Close]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match: A0A1S3BHL3 (Diaminopimelate epimerase OS=Cucumis melo OX=3656 GN=LOC103489934 PE=3 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 4.1e-189
Identity = 341/376 (90.69%), Postives = 343/376 (91.22%), Query Frame = 0 

Query: 38  TISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKV 97
           TISLPLTSPS R LAS  SLR SFTSTLQL SL KY ARRRSPRLSVSASSAGLEVTEK 
Sbjct: 6   TISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLEVTEKA 65

Query: 98  SSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 157
            SLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI
Sbjct: 66  PSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVI 125

Query: 158 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 217
           FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP
Sbjct: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIP 185

Query: 218 ELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVT 277
           ELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGNPHCVT
Sbjct: 186 ELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVT 245

Query: 278 FGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFS 337
           FGNK      EQNLQV+DINLAAIGPKFEHHEMFPARTNT             EFVQV S
Sbjct: 246 FGNKI-----EQNLQVEDINLAAIGPKFEHHEMFPARTNT-------------EFVQVLS 305

Query: 338 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 397
           NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV
Sbjct: 306 NSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHV 363

Query: 398 YMTGPAEVVFYGSVPL 414
           YMTGPAEVVFYGSVPL
Sbjct: 366 YMTGPAEVVFYGSVPL 363

[Close]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match: A0A0A0L244 (Diaminopimelate epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G293310 PE=3 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 5.1e-187
Identity = 337/376 (89.63%), Postives = 341/376 (90.69%), Query Frame = 0 

Query: 39  ISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVTEKVS 98
           ISLPLTSPS R LAS  SLR SFTS+LQL SL KYSAR RSPRLSVSA+SAGLEVTEK  
Sbjct: 7   ISLPLTSPSSRSLASIPSLRLSFTSSLQLDSLPKYSARGRSPRLSVSATSAGLEVTEKAP 66

Query: 99  SLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF 158
           S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF
Sbjct: 67  SFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIF 126

Query: 159 AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE 218
           AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE
Sbjct: 127 AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLIIPE 186

Query: 219 LQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHCVTF 278
           LQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGNPHCVTF
Sbjct: 187 LQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVTF 246

Query: 279 GNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQVFSN 338
            NK      EQNLQVD INLAAIGPKFEHHEMFPARTNT             EFVQV SN
Sbjct: 247 SNKI-----EQNLQVDGINLAAIGPKFEHHEMFPARTNT-------------EFVQVLSN 306

Query: 339 SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVY 398
           SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSE+DNHVY
Sbjct: 307 SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVY 364

Query: 399 MTGPAEVVFYGSVPLQ 415
           MTGPAEVVFYGSVPLQ
Sbjct: 367 MTGPAEVVFYGSVPLQ 364

[Close]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match: A0A6J1GFR9 (Diaminopimelate epimerase OS=Cucurbita moschata OX=3662 GN=LOC111453781 PE=3 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 9.6e-186
Identity = 337/384 (87.76%), Postives = 345/384 (89.84%), Query Frame = 0 

Query: 37  ATISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSV------SASSAG 96
           ATISLP +SPS R LAS  SLR S +STLQL S SKYSARRRSPRLSV      SASSAG
Sbjct: 5   ATISLPFSSPSRRSLASIFSLRSSVSSTLQLDSFSKYSARRRSPRLSVSASSASSASSAG 64

Query: 97  LEVTEKVSSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFG 156
           LEVTEK  S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFG
Sbjct: 65  LEVTEKALSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFG 124

Query: 157 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHT 216
           IGADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HT
Sbjct: 125 IGADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHT 184

Query: 217 GAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSM 276
           GAGLI+P+LQD+G VKVDMGEPILKASDVPTRLTP +DQSVVKADIEVDGVAWSVTCVSM
Sbjct: 185 GAGLIVPQLQDNGLVKVDMGEPILKASDVPTRLTPNTDQSVVKADIEVDGVAWSVTCVSM 244

Query: 277 GNPHCVTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFC 336
           GNPHCVTFGNK      EQNLQVDDINLAAIGPKFEHHEMFPARTNT             
Sbjct: 245 GNPHCVTFGNKI-----EQNLQVDDINLAAIGPKFEHHEMFPARTNT------------- 304

Query: 337 EFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEW 396
           EFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEW
Sbjct: 305 EFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEW 364

Query: 397 SEQDNHVYMTGPAEVVFYGSVPLQ 415
           SEQDNHVYMTGPAEVVFYGSVPLQ
Sbjct: 365 SEQDNHVYMTGPAEVVFYGSVPLQ 370

[Close]
BLAST of ClCG04G008480 vs. TAIR 10
Match: AT3G53580.1 (diaminopimelate epimerase family protein )

HSP 1 Score: 528.9 bits (1361), Expect = 3.7e-150
Identity = 264/378 (69.84%), Postives = 302/378 (79.89%), Query Frame = 0 

Query: 37  ATISLPLTSPSPRFLASFSSLRFSFTSTLQLGSLSKYSARRRSPRLSVSASSAGLEVT-E 96
           A +S    +P  R +++  S      S+L  G   K     +SP L VSA+++   VT E
Sbjct: 4   AAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEKEYC-FKSPSLRVSAAASMDAVTAE 63

Query: 97  KVSSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADG 156
           K S  SFLD++E+G+LHFVKYHGLGNDFILVDNRDSSEP+IT EQAAKLCDRNFG+GADG
Sbjct: 64  KFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADG 123

Query: 157 VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGAGLI 216
           VIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENLQG+HSFT+HTGAGLI
Sbjct: 124 VIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLI 183

Query: 217 IPELQDDGQVKVDMGEPILKASDVPTRLTPTSDQSVVKADIEVDGVAWSVTCVSMGNPHC 276
           +PE+QDDGQVKVDMG PILKA DVPT+L+    ++VV+A++ VDGV+W+VTCVSMGNPHC
Sbjct: 184 VPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHC 243

Query: 277 VTFGNKTEQQGDEQNLQVDDINLAAIGPKFEHHEMFPARTNTGWFFSKFEISAFCEFVQV 336
           +TFG K        NL+VDD+NL  IGPKFEHHEMFPARTNT             EFV+V
Sbjct: 244 ITFGKK-----GGPNLKVDDLNLPEIGPKFEHHEMFPARTNT-------------EFVEV 303

Query: 337 FSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDN 396
            S SHLKMRVWERGAGATLACGTGACA+VVAAVLEGRA R CTVDLPGGPL+IEW ++DN
Sbjct: 304 LSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDN 362

Query: 397 HVYMTGPAEVVFYGSVPL 414
           H+YMTGPAE VFYGS  L
Sbjct: 364 HIYMTGPAEAVFYGSALL 362

The following BLAST results are available for this feature:
BLAST of ClCG04G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977248.15.9e-19084.65diaminopimelate epimerase, chloroplastic-like [Cucurbita maxima][more]
XP_008447504.18.6e-18990.69PREDICTED: diaminopimelate epimerase, chloroplastic [Cucumis melo] >KAA0047342.1... [more]
XP_038880931.11.5e-18889.66diaminopimelate epimerase, chloroplastic-like [Benincasa hispida][more]
XP_004142088.11.0e-18689.63diaminopimelate epimerase, chloroplastic [Cucumis sativus] >KGN54221.1 hypotheti... [more]
XP_023544386.11.8e-18683.57diaminopimelate epimerase, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of ClCG04G008480 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFG25.3e-14969.84Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF... [more]
Q2QNF72.7e-13770.15Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
A2ZLS46.0e-13769.85Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica ... [more]
P746671.5e-10361.39Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
Q8YVD02.2e-10260.60Diaminopimelate epimerase 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 25... [more]
BLAST of ClCG04G008480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IPE72.9e-19084.65Diaminopimelate epimerase OS=Cucurbita maxima OX=3661 GN=LOC111477617 PE=3 SV=1[more]
A0A5A7TV604.1e-18990.69Diaminopimelate epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3BHL34.1e-18990.69Diaminopimelate epimerase OS=Cucumis melo OX=3656 GN=LOC103489934 PE=3 SV=1[more]
A0A0A0L2445.1e-18789.63Diaminopimelate epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G293310 PE=3 SV=1[more]
A0A6J1GFR99.6e-18687.76Diaminopimelate epimerase OS=Cucurbita moschata OX=3662 GN=LOC111453781 PE=3 SV=... [more]
BLAST of ClCG04G008480 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53580.13.7e-15069.84diaminopimelate epimerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001653Diaminopimelate epimerase, DapFPFAMPF01678DAP_epimerasecoord: 113..233
e-value: 1.6E-35
score: 121.9
coord: 267..405
e-value: 3.5E-24
score: 85.3
IPR001653Diaminopimelate epimerase, DapFTIGRFAMTIGR00652TIGR00652coord: 112..410
e-value: 1.6E-88
score: 294.6
IPR001653Diaminopimelate epimerase, DapFPANTHERPTHR31689DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 79..412
IPR001653Diaminopimelate epimerase, DapFHAMAPMF_00197DAP_epimerasecoord: 111..413
score: 36.764442
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 246..397
e-value: 3.1E-38
score: 132.6
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 85..241
e-value: 4.5E-61
score: 206.7
NoneNo IPR availablePANTHERPTHR31689:SF0DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 79..412
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 254..410
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 111..240
IPR018510Diaminopimelate epimerase, active sitePROSITEPS01326DAP_EPIMERASEcoord: 174..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G008480.1ClCG04G008480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008837 diaminopimelate epimerase activity