ClCG04G008400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G008400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Glycine rich RNA binding protein
Location	CG_Chr04: 23335676 .. 23337281 (+)
RNA-Seq Expression	ClCG04G008400
Synteny	ClCG04G008400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTACGTCTCACAGAAAAATAAAAAACAGAGAATCATCTTGTGACGCCTTTCTTCTTATTTGGATTATTGAGAATGATTCGGAAATTTGGTAATGGAATCAATTTTCTGTTTGGATGCTGAATTTTTTTTAAAAAAATTTTTGGTAATGGGATCGATTTTCGGAGCACTAAATGCGATCCAGTTAATCAGCGATTCTCTGTTCTGTTGCATTTCTTTTATTTCTGGTCCTTTTCTTCGATTGGATGCGTCTTTTCCTATTTGCATATATGAAATTACTTCACTCTTCAGTGGTGGGGGTTGTTCTGGCGTAGGAAATTAGAAATTTATTCCGATCTTAATAGTAGTTATCATTTATCAATACGTAGATTTGTGTGCCTGCTTCATAGCTTAAGGACATCACAAGTATACTCTTGTACAACTTATAGAACATATCCTGTTCAGGTAGGGTCGTAAGAATGCTTTGCTAATTCATTTCTTATGCGACACGATATGCCCTTTGCATTCAAAGGTTAGAATGAAGGGAGTAGGTACCATGGGAGTACTAAAATTTCCCCCTCCCCCCACCACAAAAAAATGCATTGATAAACCTTCTCATTTGCTAAAATCATGAGACAGCACCCTCAATTCCTACATTTTTTATTGACAATTTAACACATTATTAAGTGGTATACATCATTTTATTTCATGGGCCTAGACCATTCTTAAATGCTTATGTTATGGAAGATAATGGATGAAGGTAGTATGAAAATAGTAGTACTAGAAATTGTTCTTGTTGTAGTTGATATTAATGGACATGTGATGTTTTTCATAATCTAATATTCTTTATGAATCCAAAAATTGTAGAATATGGAAACAAATAACTTGCATTAGCATAAGGTTGATTATTTGCTGAACCACGATGAACTGAACTGTTTGATCTGTTTTGGATTGGATATGTCTTGAGAAAGTCTCATTCCTATAAAATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGGTTTAATACTCTCTCTCCTTCTCTCCAATTTACAATTCTGTGAACATTTGTCGCAGAGTGCAACATGATGACATTGCCTCAACATTTGTACAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

mRNA sequence

ATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

Coding sequence (CDS)

ATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

Protein sequence

MRSATTVQAKTLTTEYLSVAVVLFLVGRSNTMAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of ClCG04G008400 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 139/149 (93.29%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG   SSSSSSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLNG---SSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of ClCG04G008400 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 8.0e-67
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+VRRVLNG    SSSS++SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFLSSVRRVLNG----SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 137/152 (90.13%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQ---SETSEFGIRTNKTIGWCG 181
           PREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of ClCG04G008400 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 139/151 (92.05%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPR-PPPQPQS-ETSEFGIRTNKTIGWCG 181
           PREPR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVL+G    SS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLSG----SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 73  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 132
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 133 EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 167
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 135 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 162
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 70  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 129
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 130 KAREGMNAKFLDGWVIFVDPA 151
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-15
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 39  RRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFG 98
           RR + G   SS  S+ SS      ++   SS+    KL++SGLS  TT++ L++ F  FG
Sbjct: 48  RRDIGGVLISSCLSTDSS------SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 107

Query: 99  QLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP--- 158
            L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R     
Sbjct: 108 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSR 167

Query: 159 ----RPPPQPQSETSEF 169
               R  P+PQS+   F
Sbjct: 168 AKPRRDFPKPQSKPRTF 178

[Close]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           + F+ GL+  T +E L++AF++FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 135 MNAKFLDGWVIFVDPAKPR 154
           MN K LDG  I V+ A+ R
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.9e-67
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+VRRVLNG    SSSS++SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFLSSVRRVLNG----SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.6e-66
Identity = 137/152 (90.13%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQ---SETSEFGIRTNKTIGWCG 181
           PREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.3e-66
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVL+G    SS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLSG----SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.6e-66
Identity = 139/151 (92.05%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT  RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPR-PPPQPQS-ETSEFGIRTNKTIGWCG 181
           PREPR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.6e-58
Identity = 118/149 (79.19%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S +RRVL G      SS++SSIL+S +T++R ++TLTSPKLFISGLSRLTTD+KLQ
Sbjct: 1   MAFVSGIRRVLGG-----GSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFS FGQLV+AKVITDRATGRSKGFGFV+Y+TIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSPFGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PREPRPPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of ClCG04G008400 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.4e-47
Identity = 102/150 (68.00%), Postives = 118/150 (78.67%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+ RR++ GSSS  SS S           VR  STLTSP+LF+SGLSRLTT+EKLQ
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPS---------LCVRRCSTLTSPRLFVSGLSRLTTNEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           +AF+SFGQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+
Sbjct: 61  DAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR 120

Query: 152 PREPRPPPQ--PQSETSEFGIRTNKTIGWC 180
           PREPR P Q  P   +SE G  TNKTIGWC
Sbjct: 121 PREPRRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of ClCG04G008400 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 73  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 132
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 133 EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 167
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of ClCG04G008400 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 135 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 162
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of ClCG04G008400 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 70  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 129
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 130 KAREGMNAKFLDGWVIFVDPA 151
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of ClCG04G008400 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 39  RRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFG 98
           RR + G   SS  S+ SS      ++   SS+    KL++SGLS  TT++ L++ F  FG
Sbjct: 48  RRDIGGVLISSCLSTDSS------SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 107

Query: 99  QLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP--- 158
            L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R     
Sbjct: 108 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSR 167

Query: 159 ----RPPPQPQSETSEF 169
               R  P+PQS+   F
Sbjct: 168 AKPRRDFPKPQSKPRTF 178

The following BLAST results are available for this feature:

BLAST of ClCG04G008400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739912.1	1.6e-67	93.29	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_022143719.1	8.0e-67	91.28	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_022972736.1	1.2e-65	90.13	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_023517167.1	1.5e-65	92.05	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_008447620.1	1.5e-65	90.60	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]

BLAST of ClCG04G008400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.5e-23	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	3.0e-16	48.45	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FZ84	2.0e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FX45	3.3e-15	40.88	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q99070	5.7e-15	50.63	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of ClCG04G008400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	3.9e-67	91.28	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	5.6e-66	90.13	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A1S3BHV3	7.3e-66	90.60	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1HDN1	9.6e-66	92.05	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	5.6e-58	79.19	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of ClCG04G008400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	3.4e-47	68.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.8e-24	55.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.1e-17	48.45	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.4e-16	53.09	glycine-rich RNA-binding protein 6	[more]
AT1G73530.1	2.4e-16	40.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 75..148 e-value: 4.5E-26 score: 102.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..142 e-value: 5.5E-20 score: 71.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..152 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 38..161 e-value: 9.1E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..180
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 32..180
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 32..180
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 73..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G008400.2	ClCG04G008400.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding