ClCG04G008097 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G008097
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 23011883 .. 23012479 (+)
RNA-Seq ExpressionClCG04G008097
SyntenyClCG04G008097
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCAATTGTTCATTCAACACAGTGGGACATGGGATGACAGCAAATGAAGTTAATGGAGGTGTTTTAAAGGGCATCATTATGCCACTAACATTGTCATACCAAGAACTGAAGGACCGGGTCTATGGAATAGCAAGGGTCGATTTATTAGAATTTGACATTGTAATGAGGGTTCAGTATAAGTTGGACTTGTACAGACCTGTGGTATGCCTAACCGACGATGACAACACACTATCGGTGAGTTTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACGACACTAATCCATGAGATGAGAGAGGCGTTTCACAATTCTAGCCAGAAGAGGGTTCGTAATTCTGAAGTGGATGCACCCACGGTTAATGATCTGAATTTCAATGGTGGAGGTGAGTGGGATGGGAATTGTCATGAGGACGTTGGGTATGATCCTCCTGTAAATGAGTTCATGCCTGCTATAGTGTTTGATACGCATTGGACACCAATTGTGCATCCTGTGTTCAATGCGCCATTGGAAACTCCAATTCTTCCCACCACTCTCAACCCTTCTCCTCTTAGATACCACGGAGGGTCAACAGGGCACTCCTCATGA

mRNA sequence

ATGGAAAGCAATTGTTCATTCAACACAGTGGGACATGGGATGACAGCAAATGAAGTTAATGGAGGTGTTTTAAAGGGCATCATTATGCCACTAACATTGTCATACCAAGAACTGAAGGACCGGGTCTATGGAATAGCAAGGGTCGATTTATTAGAATTTGACATTGTAATGAGGGTTCAGTATAAGTTGGACTTGTACAGACCTGTGGTATGCCTAACCGACGATGACAACACACTATCGGTGAGTTTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACGACACTAATCCATGAGATGAGAGAGGCGTTTCACAATTCTAGCCAGAAGAGGGTTCGTAATTCTGAAGTGGATGCACCCACGGTTAATGATCTGAATTTCAATGGTGGAGGTGAGTGGGATGGGAATTGTCATGAGGACGTTGGGTATGATCCTCCTGTAAATGAGTTCATGCCTGCTATAGTGTTTGATACGCATTGGACACCAATTGTGCATCCTGTGTTCAATGCGCCATTGGAAACTCCAATTCTTCCCACCACTCTCAACCCTTCTCCTCTTAGATACCACGGAGGGTCAACAGGGCACTCCTCATGA

Coding sequence (CDS)

ATGGAAAGCAATTGTTCATTCAACACAGTGGGACATGGGATGACAGCAAATGAAGTTAATGGAGGTGTTTTAAAGGGCATCATTATGCCACTAACATTGTCATACCAAGAACTGAAGGACCGGGTCTATGGAATAGCAAGGGTCGATTTATTAGAATTTGACATTGTAATGAGGGTTCAGTATAAGTTGGACTTGTACAGACCTGTGGTATGCCTAACCGACGATGACAACACACTATCGGTGAGTTTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACGACACTAATCCATGAGATGAGAGAGGCGTTTCACAATTCTAGCCAGAAGAGGGTTCGTAATTCTGAAGTGGATGCACCCACGGTTAATGATCTGAATTTCAATGGTGGAGGTGAGTGGGATGGGAATTGTCATGAGGACGTTGGGTATGATCCTCCTGTAAATGAGTTCATGCCTGCTATAGTGTTTGATACGCATTGGACACCAATTGTGCATCCTGTGTTCAATGCGCCATTGGAAACTCCAATTCTTCCCACCACTCTCAACCCTTCTCCTCTTAGATACCACGGAGGGTCAACAGGGCACTCCTCATGA

Protein sequence

MESNCSFNTVGHGMTANEVNGGVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDDNTLSVSLTFSLPWYPWEMTTLIHEMREAFHNSSQKRVRNSEVDAPTVNDLNFNGGGEWDGNCHEDVGYDPPVNEFMPAIVFDTHWTPIVHPVFNAPLETPILPTTLNPSPLRYHGGSTGHSS
Homology
BLAST of ClCG04G008097 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 21  GGVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDDNTL- 80
           GG L GI++P+TL Y+E K  +Y +A V+ LEFD+VMRV+YKLD   P + + +DD+   
Sbjct: 142 GGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMRVKYKLDFEAPPLYIQNDDDVYI 201

Query: 81  --------SVSLTFSLPWYPWEMTTLIHE 101
                    V L  +L  Y  E   +IH+
Sbjct: 202 FLCLDDLSRVQLYVTLKSYHDENVKMIHD 230

BLAST of ClCG04G008097 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 21  GGVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRP 69
           GG L GI++P+TL Y+ELK  +Y I  +  LEFD+VMRV+YKLD   P
Sbjct: 255 GGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMRVKYKLDFEAP 302

BLAST of ClCG04G008097 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 0

Query: 17  NEVNGGVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDD 76
           N   GG LKGII+PLT++Y+ELK+R++ + +VD   +D+V+RV Y L    P + +TDDD
Sbjct: 20  NSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPYHLACDSPPMFVTDDD 79

Query: 77  NTLSVSLTFSLPWYPWEMTTLIHEMREAFHNSSQKRVRNSEVDAPTVNDLNFNGG---GE 136
           +     +   +   P  ++T+    RE+    S +  ++ E   P    +   G     E
Sbjct: 80  DLRFALVQEQVSKVPLFVSTI---PRESIDIQSSRLNQDGEQSIPNGGSVPEEGSTRVDE 139

Query: 137 WDGN 138
           W  N
Sbjct: 140 WGLN 140

BLAST of ClCG04G008097 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 22/55 (40.00%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 22  GVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDD 77
           G L GI++P++L Y+E+K  +YG+  V   EFD++++V+YKL+   P   + +DD
Sbjct: 59  GQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDD 113

BLAST of ClCG04G008097 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 22/55 (40.00%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 22  GVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDD 77
           G L GI++P++L Y+E+K  +YG+  V   EFD++++V+YKL+   P   + +DD
Sbjct: 90  GQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDD 144

BLAST of ClCG04G008097 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-06
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 0

Query: 17  NEVNGGVLKGIIMPLTLSYQELKDRVYGIARVDLLEFDIVMRVQYKLDLYRPVVCLTDDD 76
           N   GG LKGII+PLT++Y+ELK+R++ + +VD   +D+V+RV Y L    P + +TDDD
Sbjct: 20  NSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPYHLACDSPPMFVTDDD 79

Query: 77  NTLSVSLTFSLPWYPWEMTTLIHEMREAFHNSSQKRVRNSEVDAPTVNDLNFNGG---GE 136
           +     +   +   P  ++T+    RE+    S +  ++ E   P    +   G     E
Sbjct: 80  DLRFALVQEQVSKVPLFVSTI---PRESIDIQSSRLNQDGEQSIPNGGSVPEEGSTRVDE 139

Query: 137 WDGN 138
           W  N
Sbjct: 140 WGLN 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888098.11.2e-0740.45uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_038902319.11.1e-0556.25trichohyalin-like [Benincasa hispida][more]
XP_022154925.11.5e-0532.26uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038891939.13.7e-0440.00uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida][more]
XP_038891938.13.7e-0440.00uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL087.2e-0632.26uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G008097.1ClCG04G008097.1mRNA