ClCG04G007900 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G007900
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 22856184 .. 22856615 (+)
RNA-Seq ExpressionClCG04G007900
SyntenyClCG04G007900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGCTACCTCGAGCAAATCTTTGAGTTTCTTGATGGTGAAATTGCTAACACCAATAGCTCGGGCTTTTCCAGAATCAAATAGTGCTTCCATGGCTCTCCATGTGCTCTGTATGTCCGGCGCAACACAGTTTTCAGGGTCCAAGCCAACAGATCCATGTTTCATCCGAATTGGCCAATGGATCTATAACCAAGAACTTATATTAGAATACATCATCAATAAAGTATCCATACATAAATATACAAAATTGTTGGTCTTAACATGTAAAATATCAGACTGCTAACTAAAGTAAGTAGAAGCTTTTTAATGACATGTTTTTAGTTACATACTAGGTATAGATCAACATAATCAAGCTGCAAATCTTTCAAGGTTCTATCAAGTGCTGCTGGAACGTCTTCTGGAGCATGATCAGTACACCTGCACATCATGA

mRNA sequence

ATGCGAGCTACCTCGAGCAAATCTTTGAGTTTCTTGATGGTGAAATTGCTAACACCAATAGCTCGGGCTTTTCCAGAATCAAATAGTGCTTCCATGGCTCTCCATGTGCTCTGTATGTCCGGCGCAACACAGTTTTCAGGGTCCAAGCCAACAGATCCATGTTTCATCCGAATTGGCCAATGGATCTATAACCAAGAACTTATATTAGAATACATCATCAATAAAGTATCCATACATAAATATACAAAATTTTACATACTAGGTATAGATCAACATAATCAAGCTGCAAATCTTTCAAGGTTCTATCAAGTGCTGCTGGAACGTCTTCTGGAGCATGATCAGTACACCTGCACATCATGA

Coding sequence (CDS)

ATGCGAGCTACCTCGAGCAAATCTTTGAGTTTCTTGATGGTGAAATTGCTAACACCAATAGCTCGGGCTTTTCCAGAATCAAATAGTGCTTCCATGGCTCTCCATGTGCTCTGTATGTCCGGCGCAACACAGTTTTCAGGGTCCAAGCCAACAGATCCATGTTTCATCCGAATTGGCCAATGGATCTATAACCAAGAACTTATATTAGAATACATCATCAATAAAGTATCCATACATAAATATACAAAATTTTACATACTAGGTATAGATCAACATAATCAAGCTGCAAATCTTTCAAGGTTCTATCAAGTGCTGCTGGAACGTCTTCTGGAGCATGATCAGTACACCTGCACATCATGA

Protein sequence

MRATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQWIYNQELILEYIINKVSIHKYTKFYILGIDQHNQAANLSRFYQVLLERLLEHDQYTCTS
Homology
[Close]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match: A0A0E0L3C0 (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 2   RATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQW 61
           RAT+S+S SFL+ KLLTP+ARA PES S S+A HV  +S    F   KP  P FI  GQW
Sbjct: 109 RATASRSSSFLLEKLLTPMARALPESWSFSIAAHVAGISAGRTFCPPKPA-PFFILTGQW 168

Query: 62  I 63
           I
Sbjct: 169 I 168

[Close]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match: A0A0E0DSD3 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.6e-06
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 2   RATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQW 61
           RAT+S+S SFL+ KLLTP+ARA PES S S+A HV  +S    F   KP  P FI  GQW
Sbjct: 130 RATASRSSSFLLEKLLTPMARALPESWSFSIAAHVAGISVGRTFCPPKPA-PFFILTGQW 189

Query: 62  I 63
           I
Sbjct: 190 I 189

[Close]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match: A0A0D3G8I5 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.6e-06
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 2   RATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQW 61
           RAT+S+S SFL+ KLLTP+ARA PES S S+A HV  +S    F   KP  P FI  GQW
Sbjct: 131 RATASRSSSFLLEKLLTPMARALPESWSFSIAAHVAGISVGRTFCPPKPA-PFFILTGQW 190

Query: 62  I 63
           I
Sbjct: 191 I 190

[Close]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match: A0A0D3G8I4 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.6e-06
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 2   RATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQW 61
           RAT+S+S SFL+ KLLTP+ARA PES S S+A HV  +S    F   KP  P FI  GQW
Sbjct: 199 RATASRSSSFLLEKLLTPMARALPESWSFSIAAHVAGISVGRTFCPPKPA-PFFILTGQW 258

Query: 62  I 63
           I
Sbjct: 259 I 258

[Close]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match: A0A0E0PNG2 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.6e-06
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 2   RATSSKSLSFLMVKLLTPIARAFPESNSASMALHVLCMSGATQFSGSKPTDPCFIRIGQW 61
           RAT+S+S SFL+ KLLTP+ARA PES S S+A HV  +S    F   KP  P FI  GQW
Sbjct: 160 RATASRSSSFLLEKLLTPMARALPESWSFSIAAHVAGISVGRTFCPPKPA-PFFILTGQW 219

Query: 62  I 63
           I
Sbjct: 220 I 219

The following BLAST results are available for this feature:
BLAST of ClCG04G007900 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG04G007900 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0E0L3C04.3e-0657.38Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
A0A0E0DSD39.6e-0657.38Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0D3G8I59.6e-0657.38Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1[more]
A0A0D3G8I49.6e-0657.38Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1[more]
A0A0E0PNG29.6e-0657.38Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
BLAST of ClCG04G007900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G007900.1ClCG04G007900.1mRNA