ClCG04G007660 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G007660
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 22643678 .. 22644163 (-)
RNA-Seq Expression	ClCG04G007660
Synteny	ClCG04G007660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCCTAAACTCTGTAAATCGCACCTCCAAAAATATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

mRNA sequence

ATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCCTAAACTCTGTAAATCGCACCTCCAAAAATATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Coding sequence (CDS)

ATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCCTAAACTCTGTAAATCGCACCTCCAAAAATATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Protein sequence

MSDPKTLFISNRLNSVNRTSKNMPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVNSAFETTCRPRC

Homology

[Close]

BLAST of ClCG04G007660 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 9.4e-51
Identity = 113/145 (77.93%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 1   MSDPKTLFISNRLNSVNRTSKNMPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKL 60
           MSDP+ LFIS+  NSVNRTSK M PFLFLLFIF NALL SV+VGAAPPPT+AE PSGRKL
Sbjct: 1   MSDPEALFISDLPNSVNRTSKIMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKL 60

Query: 61  GKHHSAAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGG 120
           GKHHS AVVF SPSEAPRSE KV      + A+ GG+GNEI+LE NHEHHKS DKS+AGG
Sbjct: 61  GKHHSTAVVFSSPSEAPRSEKKV------STANDGGTGNEIELE-NHEHHKSIDKSVAGG 120

Query: 121 GVILGGFATTFLVAIICYIRATRRQ 146
           GVILGG ATTFLVAI+CYIRATRRQ
Sbjct: 121 GVILGGLATTFLVAIVCYIRATRRQ 138

[Close]

BLAST of ClCG04G007660 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 6.5e-44
Identity = 100/129 (77.52%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           +PPFLFLLFIF NA  +S++  AAPPPTSAESPS RKLGKH S A+ F SP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           VQGTS   AASGG SGN +QL  NH+HHKSRDKSIAGGGVILGG ATTFLVAIICYIRAT
Sbjct: 64  VQGTS---AASGGESGNAVQL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRAT 123

Query: 143 RRQKAEVNS 152
           RRQK+E+ S
Sbjct: 124 RRQKSELGS 128

[Close]

BLAST of ClCG04G007660 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.2e-43
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           +PPFLFLLFIF NAL +S++  AAPPPTSAESPS RKLGKH S A+ F SP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           VQGTS    ASGG SGN ++L  NH+HHKSRDKSIAGGGVILGG ATTFLVA+ICYIRAT
Sbjct: 62  VQGTS---GASGGESGNAVEL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRAT 121

Query: 143 RRQKAEVNS 152
           RRQK+E+ S
Sbjct: 122 RRQKSELGS 126

[Close]

BLAST of ClCG04G007660 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-31
Identity = 89/136 (65.44%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSV-----GAAPPP--TSAESPSGRKLGKHHSAAVVF--LSP 82
           M  FLF+LFIF NA LNSV V     GAAP P  T AE+PS RKLGKH SAA V    SP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 83  SEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLV 142
           SEAPRSEMKVQ TSAAA   G         ++ H +HK+ DKSIAGGGVILGG ATTFLV
Sbjct: 61  SEAPRSEMKVQATSAAATNGG---------DHQHHNHKASDKSIAGGGVILGGLATTFLV 120

Query: 143 AIICYIRATRRQKAEV 150
           AIICYIRATRR  +EV
Sbjct: 121 AIICYIRATRRSNSEV 127

[Close]

BLAST of ClCG04G007660 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-25
Identity = 75/127 (59.06%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           M PFLFLLFIF +ALL+S +V A P       PS RKLG H SAA V  SPSEAP+SE+K
Sbjct: 1   MAPFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIK 60

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           V                      N EHHKSRD SIAGGGVILGG ATTF VAIICYIRAT
Sbjct: 61  VL--------------------ENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRAT 100

Query: 143 RRQKAEV 150
           +RQ +EV
Sbjct: 121 KRQNSEV 100

[Close]

BLAST of ClCG04G007660 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.2e-44
Identity = 100/129 (77.52%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           +PPFLFLLFIF NA  +S++  AAPPPTSAESPS RKLGKH S A+ F SP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           VQGTS   AASGG SGN +QL  NH+HHKSRDKSIAGGGVILGG ATTFLVAIICYIRAT
Sbjct: 64  VQGTS---AASGGESGNAVQL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRAT 123

Query: 143 RRQKAEVNS 152
           RRQK+E+ S
Sbjct: 124 RRQKSELGS 128

[Close]

BLAST of ClCG04G007660 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.2e-44
Identity = 100/129 (77.52%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           +PPFLFLLFIF NA  +S++  AAPPPTSAESPS RKLGKH S A+ F SP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           VQGTS   AASGG SGN +QL  NH+HHKSRDKSIAGGGVILGG ATTFLVAIICYIRAT
Sbjct: 64  VQGTS---AASGGESGNAVQL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRAT 123

Query: 143 RRQKAEVNS 152
           RRQK+E+ S
Sbjct: 124 RRQKSELGS 128

[Close]

BLAST of ClCG04G007660 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 82
           +PPFLFLLFIF NAL +S++  AAPPPTSAESPS RKLGKH S A+ F SP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 83  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 142
           VQGTS    ASGG SGN ++L  NH+HHKSRDKSIAGGGVILGG ATTFLVA+ICYIRAT
Sbjct: 62  VQGTS---GASGGESGNAVEL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRAT 121

Query: 143 RRQKAEVNS 152
           RRQK+E+ S
Sbjct: 122 RRQKSELGS 126

[Close]

BLAST of ClCG04G007660 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 89/136 (65.44%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 23  MPPFLFLLFIFVNALLNSVSV-----GAAPPP--TSAESPSGRKLGKHHSAAVVF--LSP 82
           M  FLF+LFIF NA LNSV V     GAAP P  T AE+PS RKLGKH SAA V    SP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 83  SEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLV 142
           SEAPRSEMKVQ TSAAA   G         ++ H +HK+ DKSIAGGGVILGG ATTFLV
Sbjct: 61  SEAPRSEMKVQATSAAATNGG---------DHQHHNHKASDKSIAGGGVILGGLATTFLV 120

Query: 143 AIICYIRATRRQKAEV 150
           AIICYIRATRR  +EV
Sbjct: 121 AIICYIRATRRSNSEV 127

[Close]

BLAST of ClCG04G007660 vs. ExPASy TrEMBL
Match: A0A061ERA0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021829 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 49  PTSAESPSGRKLGKHHSAAVVFL------SPSEAPRSEMKVQ--------GTSAAAAASG 108
           PT+AE+P+ RKLGKH    V         SPS+AP+ E  +         G +AA     
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 109 GGSGNEIQLENNH--EHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVN-S 157
            G    ++ +  H  +HH+S DKS+AGGGVILGG ATTFLVA+ICYIRAT R K+E + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

[Close]

BLAST of ClCG04G007660 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-10
Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 46  APPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQLEN 105
           A   + AE P+ RKLG+H           E P  E +    S            E  +  
Sbjct: 19  AAASSEAEPPATRKLGRH-----------EWPGEEAEAPEVSHL----------EETVRR 78

Query: 106 NHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQK 147
            H HH + ++S+AGGGVILGG ATTFLV + CYIRATR+ K
Sbjct: 79  GH-HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHK 97

The following BLAST results are available for this feature:

BLAST of ClCG04G007660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603622.1	9.4e-51	77.93	hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008448528.1	6.5e-44	77.52	PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc...	[more]
KGN54308.1	3.2e-43	75.19	hypothetical protein Csa_017945 [Cucumis sativus]	[more]
XP_022151558.1	4.9e-31	65.44	uncharacterized protein LOC111019472 [Momordica charantia]	[more]
KAG6595353.1	1.8e-25	59.06	hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG04G007660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G007660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSM2	3.2e-44	77.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJV8	3.2e-44	77.52	uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=...	[more]
A0A0A0KXQ0	1.6e-43	75.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1	[more]
A0A6J1DCH7	2.4e-31	65.44	uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A061ERA0	1.1e-15	47.20	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021829 PE=4 SV=1	[more]

BLAST of ClCG04G007660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	1.7e-10	40.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..114
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 23..154
None	No IPR available	PANTHER	PTHR34558:SF9	F3L24.15 PROTEIN	coord: 23..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G007660.2	ClCG04G007660.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane