ClCG04G006730 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G006730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit omega
LocationCG_Chr04: 21589687 .. 21591178 (+)
RNA-Seq ExpressionClCG04G006730
SyntenyClCG04G006730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTACTATAGACTACATACTTTGCCCAAAAGTATTTTAAGTTCATAGGTCGTGGATCAATTTTTCCAATGGTTTTCATCTAGCTATTTTACAAACTCAACCACGGTCATTACTTTCCTTTTCATTTTTCTAAAACCGAATTTCATTAAAATCAGAAAACATCCCAACAACCGAACATCAATCCGAAGAAAGAGGAAAGAACCCTATCCAAAAAGAAGAAGTTCCAAAAGAAGAAGCCAAAGCTACTAGATGATGATAAATCATTGATTTCCTTTGTAAATTTGAACTAAAGTGATAGTATTAGATCATCAAAATTATGTTAAGTCTAACAACTTCCATTGACACAATTCTTTTCACAAAATATTCATACATACGTAAGCCAAAACAAGCCAATGCAATCATGTGATCATATCTCAATTCTATTTTTACCCCATTTCAATTCATATAAACAATCATCAATATTTTTTTAAGAATTATTTCTTAATATAAGAGATATATTTGATGTCATACTTTAACAAAAAAGGAAAAAAAAAAAAGAGTATTGTTTCCTAAAGCCCCATTCCACTTTATTCTAAATATTCTCTCCCCAACATACTCTTAATTGATTAGAATCATAAAATGGATCCCCATACGAACATAGAGTTATAAGAGTCTTAGACACCTGGCCTATAACTATTTTATAGCTCGATAGGCTGTATGTATATTGAATCTAACAACAATCCTAAAATGGATTGCAATTTTTAAATATTGTTTTTTAAAAAGTTCAAATTATCCATTGAAAATGAGAAAAAAAAAAAAAAGATTTGATTCATAATACATGTAATTAATTACTTGATACAATATAAAACTCTGTAACATTATTTTTTTAAATTCAGCGTCAACCCAAGCGACCTCACAGATTCTATATCCAGCTACCCAAAAAAAGAAAAGAAAAGAAAAGAACTTTTTTTTTTTAAAGCTCACGGCGGCGCCGCTCGGCTCCGGCGTGTCAGGTTCTCGGCGATCTGAGTCAGTGACTGAAGGTTGCATCGGACGATGGTGTCCACGAACACGCACGTGTCCTCCTCGGTGTTTCCGGGAGGAATATCGACGACGTACGATTCCACCACGACGGTGCCGTCGCCGGTAGGGTGGAGGGTCGTGACGGATCGGTAGTTAGAAAGTCGGTGTTCGCCGCCGACAACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCAAGCCGCTCGGTACTGTTGGCCGCTGGAAGGCCGGAAATGACGCGTACTTCACGGAGGCTGCCGACGTTGCCGTCACCGACGATGACGTCGCAGCTCTTGACGAAGTGCTTGTACGCCTGTGGGTTGTCGAAACGGCGGACGACGGACCACACGGTGGAGACTGGGGCGTCGATCTCTTGAACGACGGCGGAGCAGCACTGGTTCAAGGCAACAGCGTGGTTGTGGTAACGCGCCACCGCGTCCGGAACCGTGGTAGCGCGTGA

mRNA sequence

ATGAGATTTACTATAGACTACATACTTTGCCCAAAACTCACGGCGGCGCCGCTCGGCTCCGGCGTGTCAGGTTCTCGGCGATCTGAGTCAGTTGCATCGGACGATGGTGTCCACGAACACGCACGTGTCCTCCTCGGTGTTTCCGGGAGGAATATCGACGACGTACGATTCCACCACGACGGTGCCGTCGCCGGTAGGGTGGAGGGTCGTGACGGATCGGTAGTTAGAAAGTCGGTGTTCGCCGCCGACAACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCAAGCCGCTCGGTACTGTTGGCCGCTGGAAGGCCGGAAATGACGCGTACTTCACGGAGGCTGCCGACGTTGCCGTCACCGACGATGACGTCGCAGCTCTTGACGAAGTGCTTGTACGCCTGTGGGTTGTCGAAACGGCGGACGACGGACCACACGGTGGAGACTGGGGCGTCGATCTCTTGAACGACGGCGGAGCAGCACTGGTTCAAGGCAACAGCGTGGTTGTGGTAACGCGCCACCGCGTCCGGAACCGTGGTAGCGCGTGA

Coding sequence (CDS)

ATGAGATTTACTATAGACTACATACTTTGCCCAAAACTCACGGCGGCGCCGCTCGGCTCCGGCGTGTCAGGTTCTCGGCGATCTGAGTCAGTTGCATCGGACGATGGTGTCCACGAACACGCACGTGTCCTCCTCGGTGTTTCCGGGAGGAATATCGACGACGTACGATTCCACCACGACGGTGCCGTCGCCGGTAGGGTGGAGGGTCGTGACGGATCGGTAGTTAGAAAGTCGGTGTTCGCCGCCGACAACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCAAGCCGCTCGGTACTGTTGGCCGCTGGAAGGCCGGAAATGACGCGTACTTCACGGAGGCTGCCGACGTTGCCGTCACCGACGATGACGTCGCAGCTCTTGACGAAGTGCTTGTACGCCTGTGGGTTGTCGAAACGGCGGACGACGGACCACACGGTGGAGACTGGGGCGTCGATCTCTTGAACGACGGCGGAGCAGCACTGGTTCAAGGCAACAGCGTGGTTGTGGTAACGCGCCACCGCGTCCGGAACCGTGGTAGCGCGTGA

Protein sequence

MRFTIDYILCPKLTAAPLGSGVSGSRRSESVASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA
Homology
BLAST of ClCG04G006730 vs. NCBI nr
Match: KAG6603563.1 (hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 6.5e-56
Identity = 116/154 (75.32%), Postives = 130/154 (84.42%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGRVEGRDGSVVRKSVFAADNTEANNM 90
           VA+DDGV EHARVLLGVS RNID+VRFHHDGAV GRVEG +G VV ++VFA+D+ EANNM
Sbjct: 24  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNM 83

Query: 91  AFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHGG 150
           AFVVENL+ LG +G WKAGNDA FTE A VA++DDDV A DEV V LWVVE A+DGPHGG
Sbjct: 84  AFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGG 143

Query: 151 DWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA 185
           D  VDLLNDGGAALV+  SVVV TRHRV +RGSA
Sbjct: 144 DRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA 177

BLAST of ClCG04G006730 vs. NCBI nr
Match: KAB5520078.1 (hypothetical protein DKX38_024397 [Salix brachista])

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-35
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEAN 90
           VA + G+HEH RVL  +S RNID VR H DGAV   GRVEG D  VVRK V   ++T+ N
Sbjct: 50  VAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGGRVEGCDRLVVRKPVVPTNDTKTN 109

Query: 91  NMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPH 150
           +M+F+VE+L+  G VG W+A ++  FTE+A V V++DDVAALDE+L+ L V+E A+D P+
Sbjct: 110 DMSFIVEDLEAFGAVGSWEARDNMDFTESAHVTVSEDDVAALDEMLISLRVIEPANDRPY 169

Query: 151 GGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG 183
           GGDWG DLL   GAALV  N V VV RH + N G
Sbjct: 170 GGDWGSDLLYHRGAALVGANGVGVVARHGLWNWG 203

BLAST of ClCG04G006730 vs. NCBI nr
Match: KAF9665277.1 (hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 85/155 (54.84%), Postives = 105/155 (67.74%), Query Frame = 0

Query: 30  SVASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG--RVEGRDGSVVRKSVFAADNTEA 89
           SVA + G+HEH RVL  +S RNID VR H DGAV    RVE  D  VVR+ V   DN + 
Sbjct: 38  SVAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGRRVESCDRLVVREPVVPTDNAKT 97

Query: 90  NNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGP 149
           N+M+F+VE+L+  G VG W+A  +  FTE+A V V++DDVAALDE+LV L V+E A+D P
Sbjct: 98  NDMSFIVEDLEAFGAVGSWEARYNVDFTESAHVTVSEDDVAALDEMLVSLRVIEPANDRP 157

Query: 150 HGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG 183
           +GGDWG DLL    AALV  NSV V  RH + N G
Sbjct: 158 YGGDWGSDLLYHRRAALVGANSVGVEARHGLWNWG 192

BLAST of ClCG04G006730 vs. NCBI nr
Match: KAG2404602.1 (uncharacterized protein HKW66_Vig0115240 [Vigna angularis] >BAT84031.1 hypothetical protein VIGAN_04129500 [Vigna angularis var. angularis])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANN 90
           VA++DG+ EHARV+ GV+G +I DV    DGA  G RVEG DG+VV ++V AAD+ EAN+
Sbjct: 20  VAAEDGIDEHARVVGGVAGWDIHDVGLDDDGARGGARVEGCDGAVVGEAVIAADHAEAND 79

Query: 91  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHG 150
           +A VVE+++ LG  G  +AG+ A+  E ADVAV+ DDVAAL EVLV LWVVE    GPHG
Sbjct: 80  VALVVEDVEALGADGGREAGDHAHLAERADVAVSQDDVAALHEVLVGLWVVEAPHHGPHG 139

Query: 151 GDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR 182
           GD   DLL+ GGAALV+G+ V VV  H V +R
Sbjct: 140 GDRRRDLLHHGGAALVRGHRVDVVAGHHVWDR 171

BLAST of ClCG04G006730 vs. NCBI nr
Match: XP_007140212.1 (hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris] >ESW12206.1 hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-31
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANN 90
           VA++DG+ EHARV+ GV+GR++ DV  H DGA  G  VEG DG+VV ++V AAD+ EAN+
Sbjct: 19  VAAEDGIDEHARVVGGVAGRDVHDVGLHDDGARGGAGVEGCDGAVVGETVIAADHAEAND 78

Query: 91  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHG 150
           +A VV++++ LG  G  +AG+ A+  E A +AV  DDVAAL EVLV L VVE    GPHG
Sbjct: 79  VALVVQDVEALGADGGREAGDHAHLPERAHIAVAQDDVAALHEVLVGLRVVEAPHHGPHG 138

Query: 151 GDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG 183
           GD   DLL++GGAALV+ + V VV  HRV + G
Sbjct: 139 GDGRRDLLHNGGAALVRRHRVDVVACHRVGDGG 171

BLAST of ClCG04G006730 vs. ExPASy TrEMBL
Match: A0A5N5JL98 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024397 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 6.2e-36
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEAN 90
           VA + G+HEH RVL  +S RNID VR H DGAV   GRVEG D  VVRK V   ++T+ N
Sbjct: 50  VAPNYGIHEHTRVLFSISWRNIDRVRLHDDGAVPSGGRVEGCDRLVVRKPVVPTNDTKTN 109

Query: 91  NMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPH 150
           +M+F+VE+L+  G VG W+A ++  FTE+A V V++DDVAALDE+L+ L V+E A+D P+
Sbjct: 110 DMSFIVEDLEAFGAVGSWEARDNMDFTESAHVTVSEDDVAALDEMLISLRVIEPANDRPY 169

Query: 151 GGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG 183
           GGDWG DLL   GAALV  N V VV RH + N G
Sbjct: 170 GGDWGSDLLYHRGAALVGANGVGVVARHGLWNWG 203

BLAST of ClCG04G006730 vs. ExPASy TrEMBL
Match: A0A0A0L1E3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G313130 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.8e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0

Query: 90  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHG 149
           M FVVENL+PLG VG  +AGNDA FTEA++VAVTDDDV ALDEVLVRL VVE ADDGPHG
Sbjct: 1   MTFVVENLQPLGAVGCREAGNDANFTEASNVAVTDDDVTALDEVLVRLRVVEAADDGPHG 60

Query: 150 GDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA 185
           GD G+DLLNDGGAALV GNSVVVVTRHRVRN GSA
Sbjct: 61  GDRGIDLLNDGGAALVHGNSVVVVTRHRVRNSGSA 95

BLAST of ClCG04G006730 vs. ExPASy TrEMBL
Match: A0A0S3RUD5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G129500 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 9.9e-34
Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANN 90
           VA++DG+ EHARV+ GV+G +I DV    DGA  G RVEG DG+VV ++V AAD+ EAN+
Sbjct: 20  VAAEDGIDEHARVVGGVAGWDIHDVGLDDDGARGGARVEGCDGAVVGEAVIAADHAEAND 79

Query: 91  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHG 150
           +A VVE+++ LG  G  +AG+ A+  E ADVAV+ DDVAAL EVLV LWVVE    GPHG
Sbjct: 80  VALVVEDVEALGADGGREAGDHAHLAERADVAVSQDDVAALHEVLVGLWVVEAPHHGPHG 139

Query: 151 GDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR 182
           GD   DLL+ GGAALV+G+ V VV  H V +R
Sbjct: 140 GDRRRDLLHHGGAALVRGHRVDVVAGHHVWDR 171

BLAST of ClCG04G006730 vs. ExPASy TrEMBL
Match: V7B6X3 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G093500g PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANN 90
           VA++DG+ EHARV+ GV+GR++ DV  H DGA  G  VEG DG+VV ++V AAD+ EAN+
Sbjct: 19  VAAEDGIDEHARVVGGVAGRDVHDVGLHDDGARGGAGVEGCDGAVVGETVIAADHAEAND 78

Query: 91  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHG 150
           +A VV++++ LG  G  +AG+ A+  E A +AV  DDVAAL EVLV L VVE    GPHG
Sbjct: 79  VALVVQDVEALGADGGREAGDHAHLPERAHIAVAQDDVAALHEVLVGLRVVEAPHHGPHG 138

Query: 151 GDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG 183
           GD   DLL++GGAALV+ + V VV  HRV + G
Sbjct: 139 GDGRRDLLHNGGAALVRRHRVDVVACHRVGDGG 171

BLAST of ClCG04G006730 vs. ExPASy TrEMBL
Match: A5AI21 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026157 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.6e-29
Identity = 73/145 (50.34%), Postives = 99/145 (68.28%), Query Frame = 0

Query: 31  VASDDGVHEHARVLLGVSGRNIDDVRF--HHDGAVAGRVEGRDGSVVRKSVFAADNTEAN 90
           VA +DGV ++ RV  GVS   ++++ F  H  GA  G VE  D SV+ ++V   D+ EA 
Sbjct: 39  VAPNDGVDKNTRVFFGVSWGYVNBIGFQDHGAGAGGGGVESGDRSVIGEAVVTTDHAEAE 98

Query: 91  NMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPH 150
           + A VVE+ + LG VGR +AG+D    E+AD+++ ++DVA LDEVLV LW+VE ADDGP 
Sbjct: 99  DXALVVEDFEALGAVGRGEAGDDVDLAESADISIANNDVATLDEVLVGLWIVEAADDGPD 158

Query: 151 GGDWGVDLLNDGGAALVQGNSVVVV 174
           GGD G DLL+DGGAAL+  + V VV
Sbjct: 159 GGDRGGDLLDDGGAALIGADBVGVV 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603563.16.5e-5675.32hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB5520078.11.3e-3555.84hypothetical protein DKX38_024397 [Salix brachista][more]
KAF9665277.12.0e-3354.84hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii][more]
KAG2404602.12.0e-3357.24uncharacterized protein HKW66_Vig0115240 [Vigna angularis] >BAT84031.1 hypotheti... [more]
XP_007140212.12.5e-3154.25hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris] >ESW12206.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N5JL986.2e-3655.84Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024397 PE=4 SV=1[more]
A0A0A0L1E35.8e-3483.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G313130 PE=4 SV=1[more]
A0A0S3RUD59.9e-3457.24Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G... [more]
V7B6X31.2e-3154.25Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G093500g PE=4 ... [more]
A5AI219.6e-2950.34Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026157 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G006730.1ClCG04G006730.1mRNA