ClCG04G006610 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G006610
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 21435028 .. 21438213 (-)
RNA-Seq Expression	ClCG04G006610
Synteny	ClCG04G006610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTTTGGATTTGAAGAAGATGAGTCAGTTCGTGGCGGCCATGCAAAAGGAGAGAGTGAAATTGAAGCGTGGCGCCGTTGAAGAACCCCAAATTCTGCTTCTCTCATCTGCAGCTGCCACCTCCCTCTGCTATTGCTCTGTTTCTTGTCTTTTCAGCTTTCTCTAATGGATACACTTCATTTCTCACATCTAACAATTTTCTGGCTTTTATATTTTTAAATTTGTAACGATTTATGTAGTTGGTTTGTGAAAAGTAATCTCATCATATTGATGGATAATTTTTATTATGTAATGATTCCCTCTTTTATAATTTATAAACAAATCCTTAAAAATATTCATCAAAATCTATATCCGTCCACAACAAATTTTATTAAATCTTGAATAGTAATTTTTATTTTACAAATAATAGAGTATATGAACTAAATTAATCTTTATTAAAATTTAATCACAAAAATTGTTATAATTTTGAAACTATAAAAACTAAATTGTTATAAATTTCTAATCATAAAGAGCAAATCTCTACAAAGTAAAGTTCGTGAACTAAATTGTTATTTTGTTAGAGACAAAAATTTAGTTTTAACTTATTATTATTGTTATTTGGTTTGATTACAATTTTTTCCTTTTTTTGGATTAAGGTTTGATCACAAATTTATTTGATTGATTTTAGGAGTATGTGGTTGGTGTAGGAATTTGATCACCTAAGAAAATGTTGTCAATTTTGTTTTATCATCCTAAGATGTGTTTGGAATACCTTCACAAGTATTTAATTTAAAAAATAAGTCATTTTCAAAAGAAATACAAATGCTTAGCAACCGCTCAAAATTGATTTTGAAAGTCACTAGTGTTTTTATTTTAAACAATCTTCCTATCAAAAGTGTTTAAATAAAAATAAATTTCTGAAAAATATTTATTGTTTAAGTTTGAAAAGGCTATCAGATGAATGGTCACTCAAATACGGATGTTAAATAGAAAGCACAGACAAACACTATAATAACCAACAAAACCAACAGGAAGCAAAAAAGAATTTTCACACAAGAGTTGATAACCTAATTCAGCGATAAACCACCTACGTTTGGGGGTAGTGTGCCCAATAAAGATAATTCACTAATATTGAATAGTTAAACGTTTACAACAAAGTACTCATCTGTAAAGTTTCAATTTCTACAGTGACTCTTGTAGAGCCTAACTTGCTGAGCACCTAGGCTCCCCCTAAGACCGAGAATTCCTTTTCTTCAACAATGCCTTAGGCTCCCCCTAAGACAGAAATAATCTTCACATTCTTGAACGATTCAAACAACGGATACGCAGAATGGAATAAAGTGGGCAAAGATCAAATCACAAATCGGCACCCAAAACAAAAACTCTTTCTCACTAAGAACAAAATGCGGCTAGACCCTAGAATAACAATTCTTCAAAATATTCAATAATGGTGGCCAACCCTAGCAAGGGCACAAAATCTTGAATAAATAATTTCTTTAGAAAAGTAAAACATCCCAAAAAGAATTCGGTGGGCCATAAGGAGGGAAATAATCTAGAATATAAAATTTGCTGAATTTTCCAAATAAGGAAAGTTTGGATAGGAGAATTGCGCTTGTTATAACAATAGCTGAGGCAACTTATGTGACATCATGCAAACGGCCAGACCCATAATACCCTGCCTTAAATAAATAAATAAGGAAAGAATTTCCTAGAAAAATATTTTCCTTTTTTTGTCACAATAAGATCCACCATAAAAAGGAAAATATCGATCAATATAATTATACTGAGATTTCCCAGATACCACCATAAGCTGCCTTAGAAAAATATAAAGACAGTCAACAAATCTCCAACAAAGTTAATGCAGACATGCTCTTAGTTTTATTTCGGAATTGCATCTAAAAAATGAGAATGTGTACATTGGCATGGTGTCATCAGTCCCCAAATACACTTTTATGCTAAATTGTACGAAAAATTTTCTAGTACAACGTACTCACTTTGTTCACACCATAATTTTTTGTTAACGTCAGGTGGGTTCCACTCTATTTTTAAAACGCATGTTGATGTGGCACACAATAAATAGAAGGGAAATTACTAGAAACTTTCTAAGTTATATAGTTATACCACAATTTTGTATTAACTTTGTAAACGTAAATATTGTTTAATATGCACATGAAACTTTCTTCTCCAATTTGCATAGGGCTAGCATTAGCCTAGGGCTTTCAATTGCTCAACGTGTTTGACTCGCATCTTTGTTGTGAATCTTAAATATCGATTGTTGAATAGTTGTGGCTAATCAAGGATGCCAAATTTTCAAATATAATCTTTATATTGATTTAGGTGTACTAATTTCACTCCTAACATGTTATGGATTATAGATTTTAAGTTTGTGTATCTAAACAAGTCTTTGAATTTTCATTTTTTTAATAAAAAAAATCATTAATTTATTAGACGGACTATTGATGAATTAGATTTCTTTAAAACGTAAAATTTTTAATCTATATCTAATAGATTCATTCATTTAAAAATTTTCAAAAGTTTAGACTCAAGATTTATTAGATATTTTTAAAATTCAAAAGACCAATTAAAAACAAAATTTAAACTTCAAAAACCTTTAAGCACTTCAACGACTAAGAACTTGTTAATCATAGATTAAACTTATATATTTTTCAAAATTGCACTCTGTTGGACTTTGATTCTAATTCTAAATAAATGGAAATGGGCCAAAGGATTCTGGGCTGGGCCCATTGTATGTTGGCAATACTTCCCGCCCAATAGTTTGCCTTTGTCTATCCAAGTGTTTTGGAGGCCACGTATATCAATTGACCAATTGGATAAGCTGTCAACAGCTATTGCTTGTATGAACGTGACTCCTTATTCCGTTGACTTTATTATTCAACGTTGACGTTATATCTCTATATTACATTTGTACGGCCAAAAAGAACCAAGTTCTCGTTCCCTTTCACTTGTTTATATACTACGTTGTATAGTTCCCTCATATCATTGTATCTTGCCATTTCAGTTGTAAACATGTCAAACCCACGACACAATAATGCCCCCGAATCGATCACATCGTCTCCTCCTCCTGCTTCCGACTTCGAAACAAAGTCGAGAACAGTGCCGGTCGGAATCGAAGCGGCTGCAATAGTAAAGAGAAAGAAGAGGGACGACATGTTGAAGAAATGGTCTCTAGGTTTAAGATGA

mRNA sequence

ATGGGTTTGTTTGGATTTGAAGAAGATGAGTCAGTTCGTGGCGGCCATGCAAAAGGAGAGAGTGAAATTGAAGCGTGGCGCCTTGTAAACATGTCAAACCCACGACACAATAATGCCCCCGAATCGATCACATCGTCTCCTCCTCCTGCTTCCGACTTCGAAACAAAGTCGAGAACAGTGCCGGTCGGAATCGAAGCGGCTGCAATAGTAAAGAGAAAGAAGAGGGACGACATGTTGAAGAAATGGTCTCTAGGTTTAAGATGA

Coding sequence (CDS)

ATGGGTTTGTTTGGATTTGAAGAAGATGAGTCAGTTCGTGGCGGCCATGCAAAAGGAGAGAGTGAAATTGAAGCGTGGCGCCTTGTAAACATGTCAAACCCACGACACAATAATGCCCCCGAATCGATCACATCGTCTCCTCCTCCTGCTTCCGACTTCGAAACAAAGTCGAGAACAGTGCCGGTCGGAATCGAAGCGGCTGCAATAGTAAAGAGAAAGAAGAGGGACGACATGTTGAAGAAATGGTCTCTAGGTTTAAGATGA

Protein sequence

MGLFGFEEDESVRGGHAKGESEIEAWRLVNMSNPRHNNAPESITSSPPPASDFETKSRTVPVGIEAAAIVKRKKRDDMLKKWSLGLR

Homology

[Close]

BLAST of ClCG04G006610 vs. NCBI nr
Match: XP_038882342.1 (CASP-like protein 4B1 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-09
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 31 MSNPRHNNAPESITSSPPPASDFETKSRTVPVGIEAAAIVKRKKRDDMLKKWSLGLR 88
          MSNPR NNAPE+ITS+ P A D ET+S   PVG EAAAIVKR KR+D+LKK SL LR
Sbjct: 1  MSNPRDNNAPETITSA-PLAPDVETRSTVPPVGTEAAAIVKRMKREDILKKLSLSLR 56

The following BLAST results are available for this feature:

BLAST of ClCG04G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882342.1	6.3e-09	70.18	CASP-like protein 4B1 [Benincasa hispida]	[more]

BLAST of ClCG04G006610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G006610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G006610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G006610.1	ClCG04G006610.1	mRNA