ClCG04G005970 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G005970
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ER membrane protein complex subunit 8/9 homolog
Location	CG_Chr04: 20252913 .. 20256489 (+)
RNA-Seq Expression	ClCG04G005970
Synteny	ClCG04G005970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCATCTTCTTCCCACTTCTCTACTACTTGCCGTACGGCTTTACTTCGGCTGTAAACTCCGCCTCCTCCTCCTCTCTTAACCGTCTCTCCCTGCAGACTAACCGGAGATTTACCAACTCACAGATTCATGGGCGGCGATCTACGCTTCGAGATCTCTCAGAATGCTTACATAAAGCTTGTTCTCCATGCCCTAAAGCACCGGACCTCCGCCGTCAACGGAGTCCTCCTAGGTCGCATCTCCGGCCCCAATGATGTCATCGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTCCCGCAGCTCGAGATATCTCTCCTTCTGGTACTCCTTTTGAACCATTTTACAACCGATTTTCATGTTTAGGTTTCTGCAAACTGCTTGCTCATGTGCGAATTTGCTGTGTTTGACGCCATGTTTACTGCATTTTCACTGTGTATTTGAGATCTGTGATTGATGAGGTCGTGACATGCTTGATTTGCAATCAGATTGAAGAATATTATGTGGCTAAGGGATTGAATATCGTGGGGTACTTTCATGCCAATGAGCGGTTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGGTAAGAGATGTCTAATTGTGCTTAATCTGAATTGCTTTGTTTTGTATATTTCTTTTGTTTGATTTATGCTTCTCCGCAGTTAGATCACAGAAAACTTGAAGCTTTGCCAAAGAGAAAGGATAGAAGTCCTGTAATGGAGGTGAGTTTATCGCTACAGAAATCTAATCATGGTTTTGTAAATTGTATTTGTACGCTACATTAGAATTCCCTCAATGAGTTTCCACCATGTTTTCCTCTTTTTCTTTTGGTTCGAAATCATTCGAAGGAGCAATTTTATATCACGAAGAGGCAGAATTGGAATATTGTTGGTGTTGAAGGACAGTGGAATATTGAAAAGTAGCTTTGTATCATTTTAGATAATTCATTCGTTAATTGAGGGGATATTCTTCATAGTTTTCCCAAATGCTGGATTTGACCTTATACTAAAATGCCACGAGAATGCTTTATAGCATCTCTGCCTGTCTTCTTTAGACAATTTCTCGCTCCTCTGTCCATTCATAAAGAGTTGAAGATTTTCACGGACTTTCTTGTTATCATAGATTGCAGCTAGTAGTAGTAAGTAGTAACTAGATCTTTAAATTTATTTGATTTTCTGAATCCGTTTTAATGTTCTCTAAATTTGGTTGGCTTGTACGGATTCTGCATTGGATTGGATACAGTTTGTGATGTTTCTTTTTAGGAAGTGAAAGTTTGAGAGAGGCAATAGGAGGGTGATCTCCAATTTTTGTTGGGGCTGCCCCAGCTTTAGATGTAGGATTTCATTAGATGCTCAGCATGGAATCTCTGGATAGATCTAGGAGAAACTTCAATAGAATCTTTTTTGCCCATTAGGTGGAGAGTCATTCCACTCCTTTATTTAGTTTCCCCCTCCACAGCTAGGGCTTATGCTTAGTGTATGTTTAATTATAGGAGGATTCTCCGCCGTGGGGAAGACCATGGAGTGGATTTCTTTATCTCTTTCCTTTTGGGGTCTTTTATGGACTGTCAAAATTTAAACCAATTATCAGAAAGTGGTGGCTCGAAGTTATAGGTTTTTTATCTTGTAAATCTTTTTATAGCTTTTGGTGCAAGATCCAAGTGTTGCATTAAATAAAAATGACTTGATTTGAAAATTTAATAGGTCCAGACGTTCATTGTACAAACAATGATTTAGAGGGTGCAGTGGTGGAAGCAAATACATATCCATCTATATTGTGGAGCGGGATAGACCCAGATGTTATCCTTTTATTCATTTGCCTTTACAAGTAATTTTAGATTTTATGAATCAACCTTATTTGATCATTCCCTTCTGCATTTTCTTAAAGAAAAAAGGTTTGTCCTGTTGGAGTTCCTTGTTGATTGTTACCTCTTTTACCAGCCACCTTGGGTTAGACTTGTGACTAAGGGCCAGAGAGGGAACAAATTTAAGTTGTGGTGGCCGGCCACCTACATTAGAATTTTATGAATTTGCTTGGTACCTAAATATAGTAGAGTCAAGTGGTCATCTAGTGAGAATATTTGAGCTGGGATGGGGCATCATGGGTATCACTTTTGTTTCCAAATGGTTTCCTACTCTGTTACATAGAAGGTATGATACTTCATTTGAGGCAGAGAATCTGTATTGGATGCTGATTTGTCCAGATATGCTCTGGATATGTGTCCCATATGCGAATTCGCGTATCCCATTTTAAAAAACTTTTGGCTACCATGTCCCTTCCCAGATACGTGAAGGGAACACATCGGGTTCTTTTTTTCCCTTCAAATCTTGCAACATCCATTTAAGAAACCCATAGTTGTCCTAGCCTAAAATGAGCATAAATTATGAACAAATTCAACAATAAATAAATATTCCTTAGTCCTTACTATTGCGACGGCAAGCAGACCATCTTCTGCTTCATTCTTACCTTTGCCATTCACGACCAACCACCGTCCTCTATGTGCCCCACCACCATCTTCTTAATATGTATTTCGGTATTTGTATTGTATTTTGTACTATTGTCAATTAATTTGACATTTCATTCTTTTTAGTGGGCTACATTTAGTATATTTCTGTTAAATTTACATAATATCATAAAAATGATAATTGTTATAAAAAGTAACATATTCTTATCCTAGTTTTTCAGAAATTAACGTATTTCTATGTCCTACTTTGTCCGTGTCTGTGCTTCTAACATAGAAGTTTGGATTTTTTGAATTGACCCTATTTGATCATTTCCTTATGCATTTTCTTTTAGAAATTAATAAAACTTGTTGGAGTTATGTAAACGGCTTAGAGTGGTTGGATTTAGTTCATGGTGGTCAACTACCTATGATTTAAAATCCTATGAGCGAGTGTTTTTGAGGGTTGGTGTCATCGGAAATTTACTTTGAGATTTGAGTCTTTTGCTTGGTAGCATTTCTAGATTCTGATTGCTTTTTGTGCCAATTGATTTTATCACCCTAGCGTCACTTTTTTGCTCTCTCAAATATTCTACTTGTGCTGCATAAGGTTTTTTGGGAGCATTTAGTTTAATCAAGATGCGATTGTATTTTATGAATGACTCTACTTTCCAATGAAGAATATTGATTATCATGGCTATTTTGTGCTGCTACTAACTCTATGCCACCTAACCAGACGTCATGTAATCTAAGAATACTTTTAAACTATAGACCTCTATGTTGTTAGTTCTAAAATATGGTAGACTAAGCATGAGAAGATGGTTGCATAATGCTCTTATCATTCATTTTGTTCATTTTGTCGCCAACCAGCTATATACAAAGGAAACTTCCAAAAACTGGAAGCTGGCTGGATCAGATGGAAGCAGTCAGTTAACGATCAAGGAACCGTCAGCAAATGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGGAAGATGTGGTGGACTTTGATGATCACCTCGATGACATTAGCAAGTACAACACACAATCCCCTTCTCATTTTCAATCATGA

mRNA sequence

TGTCATCTTCTTCCCACTTCTCTACTACTTGCCGTACGGCTTTACTTCGGCTGTAAACTCCGCCTCCTCCTCCTCTCTTAACCGTCTCTCCCTGCAGACTAACCGGAGATTTACCAACTCACAGATTCATGGGCGGCGATCTACGCTTCGAGATCTCTCAGAATGCTTACATAAAGCTTGTTCTCCATGCCCTAAAGCACCGGACCTCCGCCGTCAACGGAGTCCTCCTAGGTCGCATCTCCGGCCCCAATGATGTCATCGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTCCCGCAGCTCGAGATATCTCTCCTTCTGATTGAAGAATATTATGTGGCTAAGGGATTGAATATCGTGGGGTACTTTCATGCCAATGAGCGGTTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGTTAGATCACAGAAAACTTGAAGCTTTGCCAAAGAGAAAGGATAGAAGTCCTGTAATGGAGACCTCTATGTTGTTAGTTCTAAAATATGGTAGACTAAGCATGAGAAGATGGTTGCATAATGCTCTTATCATTCATTTTGTTCATTTTGTCGCCAACCAGCTATATACAAAGGAAACTTCCAAAAACTGGAAGCTGGCTGGATCAGATGGAAGCAGTCAGTTAACGATCAAGGAACCGTCAGCAAATGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGGAAGATGTGGTGGACTTTGATGATCACCTCGATGACATTAGCAAGTACAACACACAATCCCCTTCTCATTTTCAATCATGA

Coding sequence (CDS)

ATGGGCGGCGATCTACGCTTCGAGATCTCTCAGAATGCTTACATAAAGCTTGTTCTCCATGCCCTAAAGCACCGGACCTCCGCCGTCAACGGAGTCCTCCTAGGTCGCATCTCCGGCCCCAATGATGTCATCGAAATTTCCGATTCCGTCCCTCTCTTCCACTCCAGCATCGGTCTCCTCCCGCAGCTCGAGATATCTCTCCTTCTGATTGAAGAATATTATGTGGCTAAGGGATTGAATATCGTGGGGTACTTTCATGCCAATGAGCGGTTTGATGACTATGAGGTCGGCGGTGTAGCCAAGAATATTGGTGATCATATTTCTCGATTTTTTCCACATGCTGCTCTTCTTTTGTTAGATCACAGAAAACTTGAAGCTTTGCCAAAGAGAAAGGATAGAAGTCCTGTAATGGAGACCTCTATGTTGTTAGTTCTAAAATATGGTAGACTAAGCATGAGAAGATGGTTGCATAATGCTCTTATCATTCATTTTGTTCATTTTGTCGCCAACCAGCTATATACAAAGGAAACTTCCAAAAACTGGAAGCTGGCTGGATCAGATGGAAGCAGTCAGTTAACGATCAAGGAACCGTCAGCAAATGTGGTCCTGTTGGATTTCATATCATCTGAAAAATGGGAAGATGTGGTGGACTTTGATGATCACCTCGATGACATTAGCAAGTACAACACACAATCCCCTTCTCATTTTCAATCATGA

Protein sequence

MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDHRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKNWKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISKYNTQSPSHFQS

Homology

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BLAST of ClCG04G005970 vs. NCBI nr
Match: XP_008455761.1 (PREDICTED: ER membrane protein complex subunit 8/9 homolog [Cucumis melo] >KAA0025782.1 ER membrane protein complex subunit 8/9-like protein [Cucumis melo var. makuwa] >TYK09673.1 ER membrane protein complex subunit 8/9-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 363.2 bits (931), Expect = 1.7e-96
Identity = 190/227 (83.70%), Postives = 192/227 (84.58%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHR+SAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRSSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQL IKEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLMIKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

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BLAST of ClCG04G005970 vs. NCBI nr
Match: XP_038880935.1 (ER membrane protein complex subunit 8/9 homolog [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.7e-96
Identity = 190/227 (83.70%), Postives = 191/227 (84.14%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MG DLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGSDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLE LPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEVLPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQLTIKEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

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BLAST of ClCG04G005970 vs. NCBI nr
Match: XP_004144311.1 (ER membrane protein complex subunit 8/9 homolog [Cucumis sativus] >KGN54668.1 hypothetical protein Csa_012212 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 2.9e-96
Identity = 189/227 (83.26%), Postives = 192/227 (84.58%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHRT+AVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRTTAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQL +KEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLMMKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

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BLAST of ClCG04G005970 vs. NCBI nr
Match: XP_022950917.1 (ER membrane protein complex subunit 8/9 homolog [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 7.8e-94
Identity = 183/227 (80.62%), Postives = 190/227 (83.70%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKL+LHALKHRTSAVNG+LLGRISGP DVIEI+DSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLILHALKHRTSAVNGLLLGRISGPTDVIEIADSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYT+ET KN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTRETPKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQLTIKEP AN+VLLD+ISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLTIKEPLANMVLLDYISSEKWQDVVDFDDHLDDISK 194

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BLAST of ClCG04G005970 vs. NCBI nr
Match: KAG6603425.1 (ER membrane protein complex subunit 8/9-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.0 bits (907), Expect = 1.0e-93
Identity = 182/227 (80.18%), Postives = 190/227 (83.70%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKL+LHALKHRTSAVNG+LLGRISGP DVIEI+DSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLILHALKHRTSAVNGLLLGRISGPTDVIEIADSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYT+ET KN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTRETPKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQLTIKEP AN+VLLD++SSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLTIKEPLANMVLLDYVSSEKWQDVVDFDDHLDDISK 194

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BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot
Match: Q9FG71 (ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana OX=3702 GN=EMB2731 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-71
Identity = 139/226 (61.50%), Postives = 173/226 (76.55%), Query Frame = 0


Query: 3   GDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPND-VIEISDSVPLFHSSIGLLP 62
           G+L++EISQNAYIKLVLH+L+H+T+AVNGVL+GRIS  +D V+EISDSVPLFHS++ LLP
Sbjct: 7   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66

Query: 63  QLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDH 122
            LEISL++IEE+YVA+GL+IVGYFHANERFDD E+ GVAKNIGDHISR+FP A +LLL++
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 123 RKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKNW 182
           +KLEAL K K+RSPVM                                 QL  K+ SKNW
Sbjct: 127 KKLEALSKGKERSPVM---------------------------------QLCVKDASKNW 186

Query: 183 KLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           ++ G+DG S+L +KEPSANVVL D+ISSEKW+DV D DDHLDD++K
Sbjct: 187 RVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTK 199

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BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot
Match: Q9DB76 (ER membrane protein complex subunit 9 OS=Mus musculus OX=10090 GN=Emc9 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-20
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 8   EISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEISL 67
           EIS  AY K+ LHA ++  +AVNG+LL   +G  + + ++D VPLFHS + L   LE++L
Sbjct: 5   EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLCLTDCVPLFHSHLALSVMLEVAL 64

Query: 68  LLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDHRKLEAL 127
             ++ +    GL + GY+HAN   DD   G +A  I   I+ FFP A L++LD++KL   
Sbjct: 65  NQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLDNKKLVTR 124

Query: 128 PK 130
           P+
Sbjct: 125 PR 126

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BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot
Match: Q5U1W7 (ER membrane protein complex subunit 9 OS=Rattus norvegicus OX=10116 GN=Emc9 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-19
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 8   EISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEISL 67
           EIS  AY K+ LHA ++  +AVNG+LL   +   + + ++D VPLFHS + L   LE++L
Sbjct: 5   EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLCLTDCVPLFHSHLALSVMLEVAL 64

Query: 68  LLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDHRKLEAL 127
             ++ +    GL + GY+HAN   DD   G +A  I   I+ FFP+A L++LD++KL   
Sbjct: 65  NQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLDNKKLVTW 124

Query: 128 PK 130
           P+
Sbjct: 125 PR 126

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BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot
Match: Q9Y3B6 (ER membrane protein complex subunit 9 OS=Homo sapiens OX=9606 GN=EMC9 PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 8   EISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEISL 67
           EIS  AY+K+ LHA ++  +AVNG+ L       + + ++D VPLFHS + L   LE++L
Sbjct: 5   EISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVAL 64

Query: 68  LLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDHRKLEAL 127
             ++ +    GL + GY+HAN   +D   G +A  I   I+ FFP A L++LD++KL   
Sbjct: 65  NQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQ 124

Query: 128 PK 130
           P+
Sbjct: 125 PR 126

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BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot
Match: Q9W1Y1 (ER membrane protein complex subunit 8/9 homolog OS=Drosophila melanogaster OX=7227 GN=EMC8-9 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 7   FEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLLPQLEIS 66
           +++S+ AY KL+ HA K+   AVNG+LL   +     +EI D++PLFH  + + P  E++
Sbjct: 4   YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQVEIVDAIPLFHQCLYVTPMAEVA 63

Query: 67  LLLIEEYYVAKGLNIVGYFHANERFDDYEVGGV-AKNIGDHISRFFPHAALLLLDHR 123
           L+LI+ +   +GL I GY+ A E F D +V    A  I D I   F +A  +++D++
Sbjct: 64  LMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120

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BLAST of ClCG04G005970 vs. ExPASy TrEMBL
Match: A0A5A7SKW9 (ER membrane protein complex subunit 8/9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00760 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 8.1e-97
Identity = 190/227 (83.70%), Postives = 192/227 (84.58%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHR+SAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRSSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQL IKEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLMIKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

[Close]

BLAST of ClCG04G005970 vs. ExPASy TrEMBL
Match: A0A1S3C2C1 (ER membrane protein complex subunit 8/9 homolog OS=Cucumis melo OX=3656 GN=LOC103495860 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 8.1e-97
Identity = 190/227 (83.70%), Postives = 192/227 (84.58%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHR+SAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRSSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQL IKEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLMIKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

[Close]

BLAST of ClCG04G005970 vs. ExPASy TrEMBL
Match: A0A0A0KYR9 (MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G419600 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.4e-96
Identity = 189/227 (83.26%), Postives = 192/227 (84.58%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHRT+AVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRTTAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYTKETSKN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTKETSKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQL +KEPSANVVLLDFISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLMMKEPSANVVLLDFISSEKWQDVVDFDDHLDDISK 194

[Close]

BLAST of ClCG04G005970 vs. ExPASy TrEMBL
Match: A0A6J1GG75 (ER membrane protein complex subunit 8/9 homolog OS=Cucurbita moschata OX=3662 GN=LOC111453869 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.8e-94
Identity = 183/227 (80.62%), Postives = 190/227 (83.70%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKL+LHALKHRTSAVNG+LLGRISGP DVIEI+DSVPLFHSSIGLL
Sbjct: 1   MGGDLRFEISQNAYIKLILHALKHRTSAVNGLLLGRISGPTDVIEIADSVPLFHSSIGLL 60

Query: 61  PQLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120
           PQLEISLLLIEEYY AKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD
Sbjct: 61  PQLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLD 120

Query: 121 HRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKN 180
           HRKLEALPKRKDRSPVME                                 LYT+ET KN
Sbjct: 121 HRKLEALPKRKDRSPVME---------------------------------LYTRETPKN 180

Query: 181 WKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           WKLAGSDGSSQLTIKEP AN+VLLD+ISSEKW+DVVDFDDHLDDISK
Sbjct: 181 WKLAGSDGSSQLTIKEPLANMVLLDYISSEKWQDVVDFDDHLDDISK 194

[Close]

BLAST of ClCG04G005970 vs. ExPASy TrEMBL
Match: A0A6J1DLT0 (ER membrane protein complex subunit 8/9 homolog OS=Momordica charantia OX=3673 GN=LOC111021748 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 183/228 (80.26%), Postives = 190/228 (83.33%), Query Frame = 0


Query: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVIEISDSVPLFHSSIGLL 60
           MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDV+EI+DSVPLFHS+IGLL
Sbjct: 1   MGGDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPNDVVEIADSVPLFHSNIGLL 60

Query: 61  PQLEISLLLIEEYY-VAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLL 120
           PQLEISLLLIEEYY  AKGLNIVGYFHANERFDDYEV GVAKNIGDHISRFFPHAALLLL
Sbjct: 61  PQLEISLLLIEEYYAAAKGLNIVGYFHANERFDDYEVSGVAKNIGDHISRFFPHAALLLL 120

Query: 121 DHRKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSK 180
           DHRKLEALPKRKDRSPVME                                 LYT+ET+K
Sbjct: 121 DHRKLEALPKRKDRSPVME---------------------------------LYTRETAK 180

Query: 181 NWKLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           NWKL GSDGSSQLTIKEPSANVVLLDFISSEKW+ V+DFDDHLDDISK
Sbjct: 181 NWKLVGSDGSSQLTIKEPSANVVLLDFISSEKWQAVMDFDDHLDDISK 195

[Close]

BLAST of ClCG04G005970 vs. TAIR 10
Match: AT5G55940.1 (Uncharacterised protein family (UPF0172) )

HSP 1 Score: 270.8 bits (691), Expect = 1.1e-72
Identity = 139/226 (61.50%), Postives = 173/226 (76.55%), Query Frame = 0


Query: 3   GDLRFEISQNAYIKLVLHALKHRTSAVNGVLLGRISGPND-VIEISDSVPLFHSSIGLLP 62
           G+L++EISQNAYIKLVLH+L+H+T+AVNGVL+GRIS  +D V+EISDSVPLFHS++ LLP
Sbjct: 7   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66

Query: 63  QLEISLLLIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLLDH 122
            LEISL++IEE+YVA+GL+IVGYFHANERFDD E+ GVAKNIGDHISR+FP A +LLL++
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 123 RKLEALPKRKDRSPVMETSMLLVLKYGRLSMRRWLHNALIIHFVHFVANQLYTKETSKNW 182
           +KLEAL K K+RSPVM                                 QL  K+ SKNW
Sbjct: 127 KKLEALSKGKERSPVM---------------------------------QLCVKDASKNW 186

Query: 183 KLAGSDGSSQLTIKEPSANVVLLDFISSEKWEDVVDFDDHLDDISK 228
           ++ G+DG S+L +KEPSANVVL D+ISSEKW+DV D DDHLDD++K
Sbjct: 187 RVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTK 199

[Close]

BLAST of ClCG04G005970 vs. TAIR 10
Match: AT5G51620.3 (Uncharacterised protein family (UPF0172) )

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-17
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 69  LIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLL 119
           +IEE+YVA+GL+IVGYFHANERFDD E+ GVAKNIGDHISR+FP A +LL
Sbjct: 1   MIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILL 50

[Close]

BLAST of ClCG04G005970 vs. TAIR 10
Match: AT5G51620.2 (Uncharacterised protein family (UPF0172) )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 69  LIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIG 105
           +IEE+YVA+GL+IVGYFHANERFDD E+ GVAKNIG
Sbjct: 1   MIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIG 36

[Close]

BLAST of ClCG04G005970 vs. TAIR 10
Match: AT5G51620.1 (Uncharacterised protein family (UPF0172) )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 69  LIEEYYVAKGLNIVGYFHANERFDDYEVGGVAKNIG 105
           +IEE+YVA+GL+IVGYFHANERFDD E+ GVAKNIG
Sbjct: 1   MIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIG 36

The following BLAST results are available for this feature:

BLAST of ClCG04G005970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455761.1	1.7e-96	83.70	PREDICTED: ER membrane protein complex subunit 8/9 homolog [Cucumis melo] >KAA00...	[more]
XP_038880935.1	1.7e-96	83.70	ER membrane protein complex subunit 8/9 homolog [Benincasa hispida]	[more]
XP_004144311.1	2.9e-96	83.26	ER membrane protein complex subunit 8/9 homolog [Cucumis sativus] >KGN54668.1 hy...	[more]
XP_022950917.1	7.8e-94	80.62	ER membrane protein complex subunit 8/9 homolog [Cucurbita moschata]	[more]
KAG6603425.1	1.0e-93	80.18	ER membrane protein complex subunit 8/9-like protein, partial [Cucurbita argyros...	[more]

BLAST of ClCG04G005970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG71	1.5e-71	61.50	ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9DB76	4.5e-20	40.98	ER membrane protein complex subunit 9 OS=Mus musculus OX=10090 GN=Emc9 PE=1 SV=1	[more]
Q5U1W7	2.3e-19	40.16	ER membrane protein complex subunit 9 OS=Rattus norvegicus OX=10116 GN=Emc9 PE=2...	[more]
Q9Y3B6	3.3e-18	38.52	ER membrane protein complex subunit 9 OS=Homo sapiens OX=9606 GN=EMC9 PE=1 SV=3	[more]
Q9W1Y1	1.2e-15	36.75	ER membrane protein complex subunit 8/9 homolog OS=Drosophila melanogaster OX=72...	[more]

BLAST of ClCG04G005970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKW9	8.1e-97	83.70	ER membrane protein complex subunit 8/9-like protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3C2C1	8.1e-97	83.70	ER membrane protein complex subunit 8/9 homolog OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KYR9	1.4e-96	83.26	MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G419600 PE=3 SV...	[more]
A0A6J1GG75	3.8e-94	80.62	ER membrane protein complex subunit 8/9 homolog OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DLT0	1.2e-92	80.26	ER membrane protein complex subunit 8/9 homolog OS=Momordica charantia OX=3673 G...	[more]

BLAST of ClCG04G005970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55940.1	1.1e-72	61.50	Uncharacterised protein family (UPF0172)	[more]
AT5G51620.3	3.7e-17	78.00	Uncharacterised protein family (UPF0172)	[more]
AT5G51620.2	1.2e-10	80.56	Uncharacterised protein family (UPF0172)	[more]
AT5G51620.1	1.2e-10	80.56	Uncharacterised protein family (UPF0172)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005366	ER membrane protein complex subunit 8/9	PFAM	PF03665	UPF0172	coord: 7..227 e-value: 1.8E-49 score: 168.5
IPR005366	ER membrane protein complex subunit 8/9	PANTHER	PTHR12941	ER MEMBRANE PROTEIN COMPLEX	coord: 1..138
IPR005366	ER membrane protein complex subunit 8/9	PANTHER	PTHR12941	ER MEMBRANE PROTEIN COMPLEX	coord: 170..228
IPR005366	ER membrane protein complex subunit 8/9	CDD	cd08060	MPN_UPF0172	coord: 9..227 e-value: 9.21528E-63 score: 192.125
None	No IPR available	PANTHER	PTHR12941:SF14	ER MEMBRANE PROTEIN COMPLEX SUBUNIT 8/9 HOMOLOG	coord: 1..138 coord: 170..228
IPR037518	MPN domain	PROSITE	PS50249	MPN	coord: 7..141 score: 20.13973

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G005970.2	ClCG04G005970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0072546	EMC complex