ClCG04G005660 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G005660
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionHeat shock protein DnaJ with tetratricopeptide repeat
LocationCG_Chr04: 19462109 .. 19464533 (-)
RNA-Seq ExpressionClCG04G005660
SyntenyClCG04G005660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAACGCCCTCGTTGCAACTCAAGAACAAAGAGAGAAGTTTATGCCACTCTTAATCTTATTGATGTGGCTTTCGCTCCTTCTCCTCGACTTGAACTCAAAGCTCATGCTTTCCTCTATCTTCGCCACTTGAAAGTTGTTGCCAATATGCTTCAGGATTTATTCAGTTTCAAGATCATCTACGGGGATTCTGCTGGCTCTAATGGGTCCTCACAACAACTCTTCAAACACAGAATTAAGCTTCTTGGATCGTTTGAGTCACCTCGTCATTGGGAAAACTTTTAGAGATTTGGAAAAGAGGGAGAAGGTGGTGCACAAAGAACATCATATCTAAACCTCATTCTTCTTCATTCTTTACATGGCGAAGCACACAATAGCGTCCTCGTTTCCACGAGGCATATTTGAAATGACTTTTTAGATCGCACTTCAAAAGTCATTTCACACAAGCTCTATTGAGACAAACCTACCATGGCTTAAGGTTTGATAGGTCCAAAGTATAATAATTTATGAGGGTAAGACACAAATTCTCCTCTCACCTTACTAAAATAAAATATAATTTACTTGTAATCACATATAAAGCTTACAAAAAGAAGAGAGAGCGGAAATAACGTGTTGCCTAACTTTGGTAACCATTTTCCTCACTTTCCCACCTTTTTATTTTATGGAGGAATGATATATATAGAAATGATTGGATTATAATCACTAACTATCCATTCAATATTTAAACTTCCATAATATAATTGTGTTAGAAGTTAGAATGCAAATATAGTCCTAACAAGGATTGATGGTGTCACAAAGAAATTTAAGTTCAGTTCAAAGAAAAAAGGTGTCACAACTACCTAAAATGTGACACTAGGAAAATTGATGGTATTCATTATAGTTAAAGAATATCACTAAAGGTCGAAGATGTCTCACTGAGGGCAATGCAACAAATCAAAGGAGTGTAGCACTATGAGCAAGACACTACAAGTTAAATGCTTATAAAGTAGCTTTTGGAGAAACTGCGTTCCTTTTTGCTAGCTTTAAATAAGCTTTGGAGTGCAGGGCGTTGCTAGCTTTAGTTTTGAGGCTTTAGCGATGCTTCCTCATATTCAAGCTCAAAGGTTATGTTGATGCTTCTTCGTCTTCAAGCTTGGAGGCTTCATTGATATTTCTCCATCTTCAAGCTTGGAGGCTTCATCAATGCTTCTCCATCCTCAAGTATGATGGTTTCGTAGCATCTTCTCCATCTCCAAGCACAATGGTTTCGCCACAACTTTTCTATCTCCAAATCTGGTAGTTTCATCGCTACTTCTCTATCCTCAAATTCAATGGTTTCATCGCAACTTTTCCATCTCAAAGTTGGATGGTACCACCACAACTTCTCCATCTCTAAATTTGATGGCTTCATTGCACTTCTCCATCTCTAAATTCGATAACTTTGCTTTCTCTCAAAAATGTTAGTGCAACTTCGCTACTCTCCAAGCTATTGGTGTAGCTTTGCTCTCTATCCAAAATGTTGGTGCAACTTTGCCTCCTCTCCAAAATGTTGGTGCCCTTCGCTTCATCTTTGAAATGTTGGTGCAACTCCACCTTCTCTCCAAAATGTTGGTGCAGCTTCGCTTAGTGTAGCTTTATATCTAAAATGTTGGTGTAGCTTTGCTCGTCTCCAAAATGTTGATGCAGTTTCACCTCCTCTCCAAAATGTTGGTGCAGCTTCGCTTCTTCTCCAAAATGTTAGTGCAACTTTGCCTCCTCTTCAAACTGTTGGTGCGGCTTCGCTCCCTCTCCAAAATATTGGTGCAACTTTATTCTTCCTCTGAAATGCTAGTGCAGCTTCGCTCCTCCTCAATATTGGTGCAACTCCACTTTGTCTTCAAGTTCAAGATCGGTGTGGTCGATTCCACTCCAAGTCAAGTTCAAAATCTGCGTGCCCAACATGTCTGCAAGAAGAAGACTTATCATTGTTGAACTTGGTATGCTAACTTCACGACGAAGGATGGTTCAGTATGCTACATCCTAAGTTGACATGTGCACGTCTGTGAAGGAGTGCACCAGCATGCCCAACATGTCTGCAAAGAGAAGACTCATCGTCGTTGGAGTTGGTACACTAACTTCACGACAAAGGATGGTTCAAGTGTAACATCCTAAGTTGATGTGTGCACAACTGTGAAGGAGTGCACTAGTGTGTCTAACATATCTACAAGGAGAAAACTCATTTCGTTGGAGTTGATACGCTAACTTCATGACAAAGGATGATTCAGAGTGTGACATCCTAAGTTGACCTATGCACGTCAATGAAGGAGTGCACCAACGTGCCCAACATATCTGCAAGGAGAAGACTCATCATCATTGGAGTTGGTACGCTAACTTCACGACAAATGATGGTTCAGAGTGTGACATCCTAAGTTGGTGCGTAAACGATTGTATAGAAGCACACTAG

mRNA sequence

ATGCAAGAACGCCCTCGTTGCAACTCAAGAACAAAGAGAGAAGTTTATGCCACTCTTAATCTTATTGATGTGGCTTTCGCTCCTTCTCCTCGACTTGAACTCAAAGCTCATGCTTTCCTCTATCTTCGCCACTTGAAAGTTGTTGCCAATATGCTTCAGGATTTATTCAGTTTCAAGATCATCTACGGGGATTCTGCTGGCTCTAATGGTCACCTCGTCATTGGGAAAACTTTTAGAGATTTGGAAAAGAGGGAGAAGCGATGCTTCCTCATATTCAAGCTCAAAGGTTATGTTGATGCTTCTTCGTCTTCAAGCTTGGAGGCTTCATTGATATTTCTCCATCTTCAAGCTTGGAGGCTTCATCAATGCTTCTCCATCCTCAAGTATGATGGTTTCGTAGCATCTTCTCCATCTCCAAGCACAATGTGCAACTTCGCTACTCTCCAAGCTATTGGTGTAGCTTTGCTCTCTATCCAAAATGTTGGTGCAACTTTGCCTCCTCTCCAAAATGTTGGTGCCCTTCGCTTCATCTTTGAAATTGTAGCTTTATATCTAAAATGTTGGTGTAGCTTTGCTCGTCTCCAAAATGTTGATGCAGTTTCACCTCCTCTCCAAAATGTTGGTGCAGCTTCGCTTCTTCTCCAAAATGTTAGTGCAACTTTGCCTCCTCTTCAAACTGTTGGTGCGGCTTCGCTCCCTCTCCAAAATATTGCTTCGCTCCTCCTCAATATTGGTGCAACTCCACTTTGTCTTCAAGTTCAAGATCGGTGTGGTCGATTCCACTCCAAGTCAAGTTCAAAATCTGCGTGCCCAACATGTCTGCAAGAAGAAGACTTATCATTGTTGAACTTGGAGTGCACCAGCATGCCCAACATGTCTGCAAAGAGAAGACTCATCGTCGTTGGAGTTGGAGTGCACCAACGTGCCCAACATATCTGCAAGGAGAAGACTCATCATCATTGGAGTTGGTACGCTAACTTCACGACAAATGATGGTTCAGAGTGTGACATCCTAAGTTGGTGCGTAAACGATTGTATAGAAGCACACTAG

Coding sequence (CDS)

ATGCAAGAACGCCCTCGTTGCAACTCAAGAACAAAGAGAGAAGTTTATGCCACTCTTAATCTTATTGATGTGGCTTTCGCTCCTTCTCCTCGACTTGAACTCAAAGCTCATGCTTTCCTCTATCTTCGCCACTTGAAAGTTGTTGCCAATATGCTTCAGGATTTATTCAGTTTCAAGATCATCTACGGGGATTCTGCTGGCTCTAATGGTCACCTCGTCATTGGGAAAACTTTTAGAGATTTGGAAAAGAGGGAGAAGCGATGCTTCCTCATATTCAAGCTCAAAGGTTATGTTGATGCTTCTTCGTCTTCAAGCTTGGAGGCTTCATTGATATTTCTCCATCTTCAAGCTTGGAGGCTTCATCAATGCTTCTCCATCCTCAAGTATGATGGTTTCGTAGCATCTTCTCCATCTCCAAGCACAATGTGCAACTTCGCTACTCTCCAAGCTATTGGTGTAGCTTTGCTCTCTATCCAAAATGTTGGTGCAACTTTGCCTCCTCTCCAAAATGTTGGTGCCCTTCGCTTCATCTTTGAAATTGTAGCTTTATATCTAAAATGTTGGTGTAGCTTTGCTCGTCTCCAAAATGTTGATGCAGTTTCACCTCCTCTCCAAAATGTTGGTGCAGCTTCGCTTCTTCTCCAAAATGTTAGTGCAACTTTGCCTCCTCTTCAAACTGTTGGTGCGGCTTCGCTCCCTCTCCAAAATATTGCTTCGCTCCTCCTCAATATTGGTGCAACTCCACTTTGTCTTCAAGTTCAAGATCGGTGTGGTCGATTCCACTCCAAGTCAAGTTCAAAATCTGCGTGCCCAACATGTCTGCAAGAAGAAGACTTATCATTGTTGAACTTGGAGTGCACCAGCATGCCCAACATGTCTGCAAAGAGAAGACTCATCGTCGTTGGAGTTGGAGTGCACCAACGTGCCCAACATATCTGCAAGGAGAAGACTCATCATCATTGGAGTTGGTACGCTAACTTCACGACAAATGATGGTTCAGAGTGTGACATCCTAAGTTGGTGCGTAAACGATTGTATAGAAGCACACTAG

Protein sequence

MQERPRCNSRTKREVYATLNLIDVAFAPSPRLELKAHAFLYLRHLKVVANMLQDLFSFKIIYGDSAGSNGHLVIGKTFRDLEKREKRCFLIFKLKGYVDASSSSSLEASLIFLHLQAWRLHQCFSILKYDGFVASSPSPSTMCNFATLQAIGVALLSIQNVGATLPPLQNVGALRFIFEIVALYLKCWCSFARLQNVDAVSPPLQNVGAASLLLQNVSATLPPLQTVGAASLPLQNIASLLLNIGATPLCLQVQDRCGRFHSKSSSKSACPTCLQEEDLSLLNLECTSMPNMSAKRRLIVVGVGVHQRAQHICKEKTHHHWSWYANFTTNDGSECDILSWCVNDCIEAH
Homology
[Close]
BLAST of ClCG04G005660 vs. NCBI nr
Match: XP_038899800.1 (uncharacterized protein LOC120087026 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-05
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 9   SRTKREVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYG 68
           ++ +RE+ A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   
Sbjct: 37  TQEQREISAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGE 96

Query: 69  DSAGSNG 71
           DSAGS G
Sbjct: 97  DSAGSEG 103

[Close]
BLAST of ClCG04G005660 vs. NCBI nr
Match: XP_008451491.1 (PREDICTED: uncharacterized protein LOC103492765 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. NCBI nr
Match: XP_004135998.2 (uncharacterized protein LOC101222380 [Cucumis sativus] >KGN45006.1 hypothetical protein Csa_016724 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. NCBI nr
Match: KAA0046686.1 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa] >TYK18222.1 Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. NCBI nr
Match: XP_022953408.1 (uncharacterized protein LOC111455971 [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 43  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKISGEDSVG 102

[Close]
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match: A0A5D3D2R9 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001610 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match: A0A0A0KB72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407590 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match: A0A1S3BRM9 (uncharacterized protein LOC103492765 OS=Cucumis melo OX=3656 GN=LOC103492765 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 39  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKIAGEDSTG 98

[Close]
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match: A0A6J1JVR8 (uncharacterized protein LOC111488307 OS=Cucurbita maxima OX=3661 GN=LOC111488307 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 41  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKISGEDSVG 100

[Close]
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match: A0A6J1GN95 (uncharacterized protein LOC111455971 OS=Cucurbita moschata OX=3662 GN=LOC111455971 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-05
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 13  REVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYGDSAG 71
           REV A LNLID A A SPR    LELKA A L LR  K VA+MLQD   SFKI   DS G
Sbjct: 43  REVSAALNLIDAALALSPRLEQALELKARALLCLRRFKDVADMLQDYIPSFKISGEDSVG 102

[Close]
BLAST of ClCG04G005660 vs. TAIR 10
Match: AT2G47440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.8e-04
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 9   SRTKREVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SFKIIYG 68
           S    +V + L+L+D A + SPR    LELKA + L+LR  K VA+MLQD   S K+   
Sbjct: 35  SEEANDVASALHLLDAALSISPRLETALELKARSLLFLRRFKDVADMLQDYIPSLKLDDE 94

Query: 69  DSAGSNG 71
            SA S G
Sbjct: 95  GSASSQG 101

[Close]
BLAST of ClCG04G005660 vs. TAIR 10
Match: AT4G02100.1 (Heat shock protein DnaJ with tetratricopeptide repeat )

HSP 1 Score: 43.5 bits (101), Expect = 4.0e-04
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 9  SRTKREVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQD 55
          S+   +V + LNL++ A + SPR    LELKA + LYLR  K VA+MLQD
Sbjct: 31 SQDPNDVKSALNLLESALSVSPRYELALELKARSLLYLRRYKDVADMLQD 80

[Close]
BLAST of ClCG04G005660 vs. TAIR 10
Match: AT3G62570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 5.3e-04
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0 

Query: 4  RPRCNSRTKREVYATLNLIDVAFAPSPR----LELKAHAFLYLRHLKVVANMLQDLF-SF 63
          R    S  + +V + ++L+D A + SPR    LELKA + L+LR  K V +MLQD   S 
Sbjct: 30 RSLMESEEQNDVASAIHLLDAALSISPRSETALELKARSLLFLRRFKDVVDMLQDYIPSL 89

Query: 64 KIIYGDSAGS 69
          K+   +  GS
Sbjct: 90 KLAVNEEDGS 99

The following BLAST results are available for this feature:
BLAST of ClCG04G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899800.13.4e-0558.21uncharacterized protein LOC120087026 [Benincasa hispida][more]
XP_008451491.17.6e-0561.90PREDICTED: uncharacterized protein LOC103492765 [Cucumis melo][more]
XP_004135998.27.6e-0561.90uncharacterized protein LOC101222380 [Cucumis sativus] >KGN45006.1 hypothetical ... [more]
KAA0046686.17.6e-0561.90Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo va... [more]
XP_022953408.19.9e-0561.90uncharacterized protein LOC111455971 [Cucurbita moschata][more]
BLAST of ClCG04G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G005660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D2R93.7e-0561.90Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo ... [more]
A0A0A0KB723.7e-0561.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407590 PE=4 SV=1[more]
A0A1S3BRM93.7e-0561.90uncharacterized protein LOC103492765 OS=Cucumis melo OX=3656 GN=LOC103492765 PE=... [more]
A0A6J1JVR84.8e-0561.90uncharacterized protein LOC111488307 OS=Cucurbita maxima OX=3661 GN=LOC111488307... [more]
A0A6J1GN954.8e-0561.90uncharacterized protein LOC111455971 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
BLAST of ClCG04G005660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47440.11.8e-0444.78Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G02100.14.0e-0450.00Heat shock protein DnaJ with tetratricopeptide repeat [more]
AT3G62570.15.3e-0438.57Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G005660.1ClCG04G005660.1mRNA