ClCG04G005270 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAAATCTAAACAAAAGGAGAGTGGGCGCGCCAAGCCAAGGGCGAAACGAAACGACCTTCGATCAAGCCCTAGATCACAAAGCTCCACTCAATCTCAACCATGGCGATTGCTCGAACAGGAGTCTACGTTGATGATTATTTGGAATGTACGTTTCCTTTAACTCTCCTGTTTTCCCCCCCTTTCTTTCGTCTCTAATTTCATTCTCATTTTGTCTTTGTTTCAATCTTCACAGATGCCAGCACATTGCCTGCTGAGCTTCAGAGGCTGCTCAATACGATCAGAGAACTCGATGATCGTTCCCAGTGTAAAACCCTCGTTTTCTGATTTTCTCACTGTTTAGAAATCGTCTGCTCGGATTCGTTGGTTTGAAATTTTCCTTTTGTTATAGCGATGATTGACCAGACGAGGCAGCAAACGAAATACTGCTTGGGATTGTCGACACAGAGTTCGAAGAAAGGATATAGTAATAGTAATACTGAGGACGAGGAGTCCGCCTTTGAGAAACTGCGGAAGGATATCGAGGCCAATCAGGATAGCGCGTTGAGTTTGTGTACTGAGAAGGTTTTGTTAGCACGTCAAGCAGGCGACCTGGTATGGCGCTCTTTCTTGCCTGGTTCAATTGCTGTTCGTTTCTCCATTTTTTACTCTGGACCCCAACTTTTTATCTCCTCTATTAATTTTTCATTTTTTTCTTTCGCCTGTCTTATCTATGAGCAATCTTGAATTGCAAGTTTGTCTGTCGTGAAGGTATGGATTTGGAGATGGTGAAGTTATTTTACGTTGAATCATTGTTATTTTTCTAACGTCTAATGAGTTCACGGGAGATTTCGTTAAAAATGGAATTGATATCAGTTTCATGCAGTTTCAGAGAGCCATTTGCTCTTTGAAATGTTGTACTGATACATTTATTCATCAACTAGCTACATGCCATTGGTATTTCAGAAAAAAATTTCTAGACTTATCTTACAGGGTTTCATGTGCTTTTACTTGTTCAGATAGATAGCCATATTAAACGACTTGATGAAGATCTAAACAACTTTGCAGAAGATCTGAAACAAGGTACGCAAACTTAGAAGCTTGGCTATTTCTGGGAAATGCAGGTTATTTTACAATATAACGTTTAAAGGTTAATTTCTTAATCTGAAGAGTTAAAGGTTAGCAAATATTAATAAACCCCAAATCCATTTTTGATATTTAACCAAACAAACAAGTAATATTTTGTTGGATGCTTTAATGAATTCCATACCTATTTGGCTTTTCCTTCCATTCAGTTTGTCTGTTTAGATAATGCTTTACCTTTTACTATTTTTTAGAGGGAAAGATTTCACCAGACGAACCGGCAATTCTTCCGCCATTGCCATTAGTTTCAAAAAATGAAAGGCGCAGACCAGTATTTATAACACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGTGATTTTGAGCTCATGCCTCCTCCTGGTGGCCATAAAAAAGACTTTGCACCTTCACTTGATGTGGATCAACCCATTGATCCAAACGAACCTACGTATTGCATTTGTCATCAGGTTCTGATTTTGGATTCATACATAGCTTCTTGAAAATTAAACCTTTTTTTTCTCCAAAGAATTTATTCGTTGTTTCATTTTTCTGGTTATGCCTGCCATATATTTATTTGGCGTTGTTTCCACACACTTAAAATTTCTGTTAGGTATTGGACTTAAAATTTCTGTTAGGTATTGGAAGACTATGGTTAGTTAGTAGTGGGTATATGAGATAGTTCGATTTGGTTAAAATAAAGCAGTGCAAGTGGTTATCGATAAAGGAAGAGGGAAGGGATTGAGGGAGGACAAATATTCACGTAATGCATGAGAAAATGGTAGCCCTCTTAGGAAGCTTTCATCCTTGATCTCTCATTATCACAATTATTTGGGGAAAAGGAAGAAAATGTGACTAATTTGTAAGCTTCAATCTCATGCAACCACTCCACGAGAGTGACAGTTCAATAGAAAAGAACAGACTATGCTATTTAGAAAGGGTTATTTCTGGCTTTATATATTTAATTGCATTGAGACCTTATTGGATGAAGAAATGTAGCTGTATCTTTTAGAGAACATTTCATTAGAAAATTCAGTGAGAAAGCAGAGGAGAGAGACTGGTAATCCATATCAGAAAATATTGCATTTTGGAAGTTGGAAGCTAAGTCTGATGCTCAAGAATGAAATTCTAAGGATAGATGATTTTAGCTTTTGAGTGGTGCAAGAAATCATGGAGTGAGGAGATGGGAACAAAAAAGTCGAAGCAAAAGGAAAGTACTAGTTTCAAAGATCAATAATAAAAAGTGAAAACAGAAAGACTACAGGGTTTTCTTCATCTTCATACATCAACTTCTTCCTCTTTCAGCTTTTGTTTGATGGAGCTTGTACAATGGAGCGCCAAATTCACTCTACAGTCTACACAATGGGATACTTTTGAATGGTGGGTTGTGTTAGGTATGATTGTCGATTAGTTAATGGGTATATGAGACAGAGTTGGCCAGATATATTGTTAGCAGCAAGTGGTTGTAAACAAAAAGGGAGGAAAAATATTTAGATTTAGTGTGGGAGACAAGTCTATCATCCTTTTTTTTTTCTTTTCAGAAGCAGTACATAACAGTCTAAAATTTCATAATTTCTCTAACTTGACTGCTGGTTACTAACCTATTTACTGGTGCCACACTTATTTGTTTTTGTAGGTTTCATTTGGAGATATGATTGCCTGTGACAATGAGAATGTAAGTCCTCCCTTCTTCTTGTATTGTCAATTCTCCTCCTTTTTTAGTCGTTTGATATCTATAATGCTGTTCTTCCCCCCTCCCCACCCCTTCCTCATGATTGTATCCGTAATGTCAAAGTTTTTCCTGTATGGTTAGTAAGTTTTGAGGCAGTGCAGTTTCTAGAAATGAAATTGTGGATATTGCCCATCTTGTGTCCTCTGAACTCGGCATTTGATCCCATAATTTTTGTGTATAATGCACGATTGTATGTAATGTAGCTGGTCCTTTTCAGGATGATTGTGCATATGTTATATGCATGAGCCTACACTCATTGAACCAAAGTTTTTTGAATAAACATTCATTTTGCTCTTACAATTTCCTGAATTCATTGCTTGTGGGTTAGACAGGTTTGTCTCTGGTTTGTGGTTTGTTTACTTGTAGAAAACCTTTTTTATTCTACTGATATACGGATGTACTATAGATAACCTATCATTAATAAATAAAATTACCCGTGGGCAAGGACTTGTACATACTGGTATTGAAGCATGAGTTTTTTGTTTTTTTTTTTTTAATCTCCTCAGATCGTCGTTGTTTCTTTTAAGTGTTTTTAACTTGATCAACTGAACCCATATTAGATAACGATTTTAGCTTTTAGTTTAGGGTTTAAGCATAACTTTTAAAAACCTAAAATCGAAAACCAAACTGTTATTAGTTATGGATTTTCATGATAACTTTTGCCTTTTCTTCTGCATTTGGATATTGACAGTGTCAAGGAGGTGAATGGTTCCATTATTCCTGCGTTGGACTGACTCCAGAAACAAGATTTAAAGGAAAGTGGTATTGTCCAACCTGCAGAGTTATACCACAATGTCAATAATGAAAAATACACTGCCAAATATTTCAGAAGGCTGTTGGGGGATATTCAAATGGTACGCTTTCTTTTCCTATCATTTTTACATTTCTCTAAAACCGAAATTGGCTTGTTATTGTATCATGTAACAATAGTAGCGTAGTAGCCAATCTGAACATAGGTCAACTATGTTCAACTAGTTGTGTATTGGTTAAAGTTAAGGTATATGCTCTCTAGATCGAGGGATTAAAAGTTCAAATCTCCCCCAAATCTCCCCACTTCACACGTTGATGAACTTTTAGAAAAAAAAAAGAAAAAAAAGCCAATGGTAGTGTAGCAATGAATTCTTTCTATTTGGAAATGGAAGTAATCATTTAGCTTGGCTCGTGAGTCATCATACATTGCCCTTTTTCCTTTTGTAATTTTGGGATGTGTTTCAATTTGGAACCGTTCAAAACTAACGATTTTGATGGGCTGTCTAAAGTACAACGATATTGGTTATCTTTTATGTCCTTTATACTTTTTTCATCATCATTTTTATTAAAGCTTATTATGTGTGGTAACTAAAATCAATGTGTAATTTGTAATTGTGATGAATTTTATGCTGACATTTATTTTTGGTGATGTGGGGGTTAAAATTATGTTTTTAGTCCTTTATATTTTTTCTTTATCGTCTTTAATAAAGCTTTTTTTTTTTTTGGTAGTAGCAAAAATCTAACGAGTTTGTTTGGATTTGCTTTATTATAAGTGCAAAACAAAAGATGTTTTAGCACTTCTAAAGTTAATCCAAGCAAGTTCTAGTGTGAATGTGGTGAATTTTATTATATGACGATCATCTTAAGTGATTTGGGATTTGGATCTCATTAATTTTGTATATGCTAATTTGAGCATCTCATTTCAGATTTGGTGTTGTTACCTTCTCAAAGGTTGATGGTTTGATCTTCTACCTTCCAACTATTGTCCAAAATAATTATAAATAAAGTTTAACTATTAGTTTGGTCAAAGTTTGGGTTTGGTTCATTTTGTCCTTATACTTTAATATGTTAAATTGGGTCCTTGTAATTATAACTTTGATCCATTTTGGTTCATGTACGAACATTTTGATCATTGGAATTTTAT TAAAAATCTAAACAAAAGGAGAGTGGGCGCGCCAAGCCAAGGGCGAAACGAAACGACCTTCGATCAAGCCCTAGATCACAAAGCTCCACTCAATCTCAACCATGGCGATTGCTCGAACAGGAGTCTACGTTGATGATTATTTGGAATATGCCAGCACATTGCCTGCTGAGCTTCAGAGGCTGCTCAATACGATCAGAGAACTCGATGATCGTTCCCAGTCGATGATTGACCAGACGAGGCAGCAAACGAAATACTGCTTGGGATTGTCGACACAGAGTTCGAAGAAAGGATATAGTAATAGTAATACTGAGGACGAGGAGTCCGCCTTTGAGAAACTGCGGAAGGATATCGAGGCCAATCAGGATAGCGCGTTGAGTTTGTGTACTGAGAAGGTTTTGTTAGCACGTCAAGCAGGCGACCTGATAGATAGCCATATTAAACGACTTGATGAAGATCTAAACAACTTTGCAGAAGATCTGAAACAAGAGGGAAAGATTTCACCAGACGAACCGGCAATTCTTCCGCCATTGCCATTAGTTTCAAAAAATGAAAGGCGCAGACCAGTATTTATAACACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGTGATTTTGAGCTCATGCCTCCTCCTGGTGGCCATAAAAAAGACTTTGCACCTTCACTTGATGTGGATCAACCCATTGATCCAAACGAACCTACGTATTGCATTTGTCATCAGGTTTCATTTGGAGATATGATTGCCTGTGACAATGAGAATTGTCAAGGAGGTGAATGGTTCCATTATTCCTGCGTTGGACTGACTCCAGAAACAAGATTTAAAGGAAAGTGGTATTGTCCAACCTGCAGAGTTATACCACAATGTCAATAATGAAAAATACACTGCCAAATATTTCAGAAGGCTGTTGGGGGATATTCAAATGATTTGGTGTTGTTACCTTCTCAAAGGTTGATGGTTTGATCTTCTACCTTCCAACTATTGTCCAAAATAATTATAAATAAAGTTTAACTATTAGTTTGGTCAAAGTTTGGGTTTGGTTCATTTTGTCCTTATACTTTAATATGTTAAATTGGGTCCTTGTAATTATAACTTTGATCCATTTTGGTTCATGTACGAACATTTTGATCATTGGAATTTTAT ATGGCGATTGCTCGAACAGGAGTCTACGTTGATGATTATTTGGAATATGCCAGCACATTGCCTGCTGAGCTTCAGAGGCTGCTCAATACGATCAGAGAACTCGATGATCGTTCCCAGTCGATGATTGACCAGACGAGGCAGCAAACGAAATACTGCTTGGGATTGTCGACACAGAGTTCGAAGAAAGGATATAGTAATAGTAATACTGAGGACGAGGAGTCCGCCTTTGAGAAACTGCGGAAGGATATCGAGGCCAATCAGGATAGCGCGTTGAGTTTGTGTACTGAGAAGGTTTTGTTAGCACGTCAAGCAGGCGACCTGATAGATAGCCATATTAAACGACTTGATGAAGATCTAAACAACTTTGCAGAAGATCTGAAACAAGAGGGAAAGATTTCACCAGACGAACCGGCAATTCTTCCGCCATTGCCATTAGTTTCAAAAAATGAAAGGCGCAGACCAGTATTTATAACACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGTGATTTTGAGCTCATGCCTCCTCCTGGTGGCCATAAAAAAGACTTTGCACCTTCACTTGATGTGGATCAACCCATTGATCCAAACGAACCTACGTATTGCATTTGTCATCAGGTTTCATTTGGAGATATGATTGCCTGTGACAATGAGAATTGTCAAGGAGGTGAATGGTTCCATTATTCCTGCGTTGGACTGACTCCAGAAACAAGATTTAAAGGAAAGTGGTATTGTCCAACCTGCAGAGTTATACCACAATGTCAATAA MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMIDQTRQQTKYCLGLSTQSSKKGYSNSNTEDEESAFEKLRKDIEANQDSALSLCTEKVLLARQAGDLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNERRRPVFITPQSKRPDYRDRDWDRERDRDFELMPPPGGHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRVIPQCQ Homology
BLAST of ClCG04G005270 vs. NCBI nr
Match: XP_038883877.1 (PHD finger protein ING2 [Benincasa hispida]) HSP 1 Score: 537.3 bits (1383), Expect = 7.2e-149 Identity = 258/263 (98.10%), Postives = 262/263 (99.62%), Query Frame = 0
BLAST of ClCG04G005270 vs. NCBI nr
Match: XP_008441974.1 (PREDICTED: PHD finger protein ING2 [Cucumis melo]) HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146 Identity = 255/263 (96.96%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of ClCG04G005270 vs. NCBI nr
Match: XP_004147532.1 (PHD finger protein ING2 [Cucumis sativus] >KGN53945.1 hypothetical protein Csa_021574 [Cucumis sativus]) HSP 1 Score: 524.6 bits (1350), Expect = 4.8e-145 Identity = 254/263 (96.58%), Postives = 257/263 (97.72%), Query Frame = 0
BLAST of ClCG04G005270 vs. NCBI nr
Match: XP_022156259.1 (PHD finger protein ING2 [Momordica charantia]) HSP 1 Score: 520.0 bits (1338), Expect = 1.2e-143 Identity = 246/263 (93.54%), Postives = 259/263 (98.48%), Query Frame = 0
BLAST of ClCG04G005270 vs. NCBI nr
Match: XP_022949615.1 (PHD finger protein ING2-like [Cucurbita moschata] >KAG6603493.1 PHD finger protein ING2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 518.5 bits (1334), Expect = 3.5e-143 Identity = 247/263 (93.92%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy Swiss-Prot
Match: B3H615 (PHD finger protein ING2 OS=Arabidopsis thaliana OX=3702 GN=ING2 PE=1 SV=1) HSP 1 Score: 427.2 bits (1097), Expect = 1.4e-118 Identity = 206/264 (78.03%), Postives = 235/264 (89.02%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy Swiss-Prot
Match: Q9UNL4 (Inhibitor of growth protein 4 OS=Homo sapiens OX=9606 GN=ING4 PE=1 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.1e-30 Identity = 88/261 (33.72%), Postives = 134/261 (51.34%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy Swiss-Prot
Match: Q5ZKY4 (Inhibitor of growth protein 4 OS=Gallus gallus OX=9031 GN=ING4 PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 5.4e-30 Identity = 87/261 (33.33%), Postives = 132/261 (50.57%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy Swiss-Prot
Match: Q8C0D7 (Inhibitor of growth protein 4 OS=Mus musculus OX=10090 GN=Ing4 PE=1 SV=2) HSP 1 Score: 132.1 bits (331), Expect = 9.1e-30 Identity = 87/261 (33.33%), Postives = 134/261 (51.34%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy Swiss-Prot
Match: Q3T095 (Inhibitor of growth protein 4 OS=Bos taurus OX=9913 GN=ING4 PE=2 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.9e-27 Identity = 83/253 (32.81%), Postives = 127/253 (50.20%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy TrEMBL
Match: A0A1S3B596 (PHD finger protein ING OS=Cucumis melo OX=3656 GN=LOC103485975 PE=3 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146 Identity = 255/263 (96.96%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy TrEMBL
Match: A0A0A0KWF6 (PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_4G192170 PE=3 SV=1) HSP 1 Score: 524.6 bits (1350), Expect = 2.3e-145 Identity = 254/263 (96.58%), Postives = 257/263 (97.72%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy TrEMBL
Match: A0A6J1DSW4 (PHD finger protein ING OS=Momordica charantia OX=3673 GN=LOC111023189 PE=3 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 5.7e-144 Identity = 246/263 (93.54%), Postives = 259/263 (98.48%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy TrEMBL
Match: A0A6J1GD88 (PHD finger protein ING OS=Cucurbita moschata OX=3662 GN=LOC111452955 PE=3 SV=1) HSP 1 Score: 518.5 bits (1334), Expect = 1.7e-143 Identity = 247/263 (93.92%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of ClCG04G005270 vs. ExPASy TrEMBL
Match: A0A6J1IPK9 (PHD finger protein ING OS=Cucurbita maxima OX=3661 GN=LOC111478300 PE=3 SV=1) HSP 1 Score: 511.5 bits (1316), Expect = 2.0e-141 Identity = 245/263 (93.16%), Postives = 255/263 (96.96%), Query Frame = 0
BLAST of ClCG04G005270 vs. TAIR 10
Match: AT1G54390.4 (PHD finger protein-related ) HSP 1 Score: 427.2 bits (1097), Expect = 9.8e-120 Identity = 206/264 (78.03%), Postives = 235/264 (89.02%), Query Frame = 0
BLAST of ClCG04G005270 vs. TAIR 10
Match: AT1G54390.3 (PHD finger protein-related ) HSP 1 Score: 427.2 bits (1097), Expect = 9.8e-120 Identity = 206/264 (78.03%), Postives = 235/264 (89.02%), Query Frame = 0
BLAST of ClCG04G005270 vs. TAIR 10
Match: AT1G54390.5 (PHD finger protein-related ) HSP 1 Score: 355.9 bits (912), Expect = 2.8e-98 Identity = 169/226 (74.78%), Postives = 198/226 (87.61%), Query Frame = 0
BLAST of ClCG04G005270 vs. TAIR 10
Match: AT1G54390.1 (PHD finger protein-related ) HSP 1 Score: 347.8 bits (891), Expect = 7.5e-96 Identity = 175/230 (76.09%), Postives = 201/230 (87.39%), Query Frame = 0
BLAST of ClCG04G005270 vs. TAIR 10
Match: AT1G54390.2 (PHD finger protein-related ) HSP 1 Score: 347.8 bits (891), Expect = 7.5e-96 Identity = 175/230 (76.09%), Postives = 201/230 (87.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|