ClCG04G004710 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G004710
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPhotosystem I assembly protein Ycf4
LocationCG_Chr04: 17814658 .. 17821451 (+)
RNA-Seq ExpressionClCG04G004710
SyntenyClCG04G004710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACCCAGAAACGAGGAAGGCATAGTAAGTGACAAAATGCTTCGAGGAGTTGAAAATAGGTGTAGATCTAGAGATTCCCAAATAGGTCAACCTTTGAAAATGTTGTTAATCCATGGGCTGGCAAGAGACAACCTGGCAATTAAAACATCTTAGTAGCTAGAAGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGTGGCGAGCGAAATGCGAGCAGCCTAAACCACATGAAAATGGTGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAATGTTGCACCCTAAATGGCGAGAGTCCAGTATTTGAAAGCATCACTAGCTTATGCTCTAACCCGAGTAGCATGGGGCATGTGGAATCTTGTGTGAATCAACAAGGACCACCTTGCAAGGCTATAGTAGAATAGCAAAATTGTGTTCCTCGTCATTAATATGTTTTATCAAGATGTATATTCCTACACGAATCTCATCAATCACTTGCTCTAATTCTACATATTGATCGTTTTAAACTAAAAGTAAACTTTTTGGTGGAATAGTGTTATTATGTATTTGGTATTTTTATTTCTTTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCTAGTCTCTTTATTAGCTCCTATTTGTGGTGCACTATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATACAAAAGAAGAAATAATGTTTATTTTTCGTTGGGGGTGATAACTTGTAGAAATACAAGTTATTATAGTCACTATTTGAATTAATTAGAGTAACTTTAGAGCTAAACACATGATTTTGGTAGTTGAATTATGTAAAATGTATTACCATGCGTTGACACTATTTACAAAAGAAAATACCTGAAAAACTAAGAGACGAAGCTGCTGCAAGAACAAGTAGAAACCCATGCGTCGAGACTATGCGTTCAGAAAAAGTAGATAAAGATGCATGGGCAAAAGGTTGTCATGTCATTACGAAAAAGGACAACACATTATCAGATCATGGCAGAACAAATGGGCCGACGATGTGAAAAGTCTGCGCAGCAGGGCATGGAATTTAATGTAAAGGTGTCAGGTCATCATGAGTTTCAACTTTTCGACGCCTATAAATAGCCCAAAGTTTCTCCATTCAAGGGGAAGAGGAGAGAGAAACGAGTTCAAGAGGCGAGAGCTCTGCACAAATCCTCCCACACCATAACCAGCCTCCATTTCGAGCTCTTCTGAGAGAAAGATTTTGAGAACTTTCAGAGTCGTCTCCTAGTGAGTGAGAACCTTCACCCTATGAACTTTATGTATCAGATAGCAACTGTAAGCACTGACTTAAGTGTTGGGAAGAGACAAGTGAGATTGTGGCTATGCGTTGTTAGAGGAAAAGTAGCCGAGAATGAGAGCAAAATTTTTGCTAAGTGTTGGCCAAGACTATGCGTTAGTGAATGAGGAGGAAAGTTGAACATTTTGAGTGACCATGCGTTGCTGATGGAATCACGAAAGGTTGCGAGCTGAAGTAGTTACCCGCATTGGAGGATAAGTGCTCGCTGGCGGGGGAAGAAATGAGCTTGAACCACCATGCGTTGGTAAGGCCATGCGCTAAAGCCACTCTGCGCCGAAGATAAAGTGGTCTCTATGCGTCGAAGACAGAGCAGCCTCCCGGACAGCAGTCTCTATGCGTCGAAGACAGCGGTCTCTATGCGCCGAAGATAAAGTTGTCTCGATGCGACAAAGTTAGTGGTGTGAATGACTGAGTTGCATGCGTCGAAAGTAGGAGGCGTCGAGGACACAGGCGTTGAGAATGGCTGATTGTTGAAGGCGTTGAGTATGTGGCGTTAGGGTGCCTTGCGTTGAAGTGAGAGGAGAACCCCTGCGCGCCAGCCCGCCTTTGGGAACTTAAGTCGGTGATATAAATAAAGGAAAGTGAATTAAATATTTATTCATTTTAGACACTTCGAGAACTTAAGTCAGTTTCACTTTCCTACGAACTACAAGGGGAGATAGAAGAGGGTGTCCTGGTGGATTTTGAACGGAAGTATATTCATCTTGGAGTTGAAATCTAAGCTGGAAGGGAAGATTCTTGGTGGACGCACAAGCTGGACAGTGTCTGATGTTCAGAGTAGAAAAAATCGAGCAGAACGAGTCTAGGGCTGAAACTTTAAGGTCAGTAAGTTAATATAATCCTTAACAATTCTCGTGAAGGATGGTAAAGCTAGAACTGAAGTTAAATGTGTGAAATGTTAGGTGAAAGCAACGGTTACGGAGTTGGTGTGCAAGCTAGGGCAACACAGAGTAAACTTGGAATAGTTGGAGAACGAAAGAGAGTTGAGTCTTGGAATTTTGAGGTAACTTGTAAAACTCAATTCTCTACAAATTTGTAGAAGGGAAGGAGTTCTAAATCCGTTTGTATGTATAACTTCAACAGCATAGGAGTAAGAACAGAAGGAGAGGAAGATAGCTCGGTTGTCGGGTGCTGCTAAGAACCGGGTCTTGCTGAGTTGAAAAAGTATAGATAGCGAGACGAGTGTCGCTGAGACGCAAGGGAGTTTTTTGTGTCACAAAACTCGTTGGGTATCGCTAGGTATCGCTCCTCAGGTAAAGTCACGCTAGTCTCGCTCCACCTAGTATCGCTAGTACCATGACTGGTTGAGTAGTATCGCTAGTATCTTGCTTATTATTACTTTAGGAAAAAGGGGAGGCTCGATGTTGAGTAATGATTAGAATTTACTTATGCATACTTAATGATCAAGTAAAGGAAAGTGTAACACAAGGAAAAATGTCTATTTCAGGCCAGGAGGAGATAGGGAAGGCGTATAATCCACTCGAGGCCTAGGAAGAGTTGTGAGTGACACCTTTCTCCTTCAAATTGATTTTTATTGAAAATATTCTTATAAGATATGGTTTGCGATGAATCGTTTTAGAAAGCATGATGTTTGATTTATTGTTCACAAGGCATGTTAAATGTTTTCTAAGTTGTTAGAACGCATTTTTATGAAATGTTATTGATTAAAGATTTGTATGATTTTCTACGAAAGGATTCTTAAAAGAACTATTTATGTGAATGGGTTTCTAAAATGTTTTAGAGGAGGCTCAGTGCTCAAGGACATGAGAAGGCACGTGAGTTTCCCCGGGACCCAGTACTGAAGGACATGGAGAAGGTACTTGGGCAACCCGTCATATTCCTATGTGCACATAGAGGTTAATTTGGCTGGTGCATCGAGTTTGCTCCGCATCGAGGCAGGGATGATTTCGACGTTGGGTGTGTTGAGCCTTGCTCCACCCCCAACTAAGGTTGTTTTCGACGTTGTGAGCGTTGAGCCTTGCTCCGCCTCAACTAAAGGAAAAGATTGAGAAACCAAACGGTCTACTGTTTAAATTCTTCTGGAAAACACTTATATACGATTTGAAATCGGATTTATGAAATTGATAGATTTGTGGGAAGTATGCTATGGCTGAATAATATGTTAAATCCTTGTATGTGTTTACATATGTAACATGCCTGTTTTCAATAAAAGTTCGTTTTACAAAAACTAGTCACTCACAGGGCTTTTAGCTCACGTTTTCCATGTTTCTTTCTTTTTTCCCCCCTCCAGGTAGCGAGGACGTTCCCGGTGCTTAGCCTACTCCAGCTCGCCCTGCCTAAGCTTCAAGTTCTCGCAACTCAGTCACGTTTTGAGAGTTGTACGTGTATAATCTTGTATAGGTGGCATGTAGATCTAGTTGTGTGAATATTGGGATTTGTAATGTGGGTTGTACAAGTATACTGTGGACGAGTATCAAACTTAATTATATATATATGTTTTGTGGTTTCTATAAGTAAAGTAAAATATGCATGGTATGATCTGTTAGGATTATCAGGCACAGATGGACAGTTTATGTCACAAAAGGGGTGATGTTTACTGTCCTCACATCTCCTCTTGGGTTGAGCGGGATAATCTGGGAGGGGGTGTGACAGCAACTATCTCAAGCCTCCATGAAGCAAGACGTTGTCAGTGGCGGCTTGACGCCTTCCATTTCTGTTTTATCTCCATCTCCCTCCTTCTTACTTATGTTTTGTTAATGACATTCGAGAGAATGGTTTATTTTCTTAATATGAGTTTGATTGACGATTATCTTCCATTTATTTCCGTATTAAATACCTTACACCATGTTGTTTGAATGCTAAATGAGTTAAATGTTAGAAGTTAGTTTTTCTTAAGCAATATTAAGTATGTTACATCTTGATTAATGCATATCATTAGCTTACATAACTTTGTCTGACAAACAAAAGTAGTAAACACGACTGTCTAGCTTGAGAGAGTGGATGGTTAATCTTTAGCATTTATCGAGACTAGATGAGGTGCAAAGATGTAGTCCATCTTTTGCCAACGCAAACTTACCATGCGTTTTAGAGATAAGATTAATGTGGCGTCGAAACATCGAGAGATGGATTCACAAACTAAGTTTGTAGGTATGTAATTATACTTAGCTATGCTTGAGTAATCAACTAGCTCCTGCGTTAACTCTACTTTTATCGCATGGTTCCATTCTCAATGCATGCTATCTGACACAATGACATTTGACTAACCATCGTCGCGTCCACCTCATTGTTAGTTGTAGGAAATTTTATTCATTCTTTATGTATAGTTTTAGATACATACAACCAACACATGCACATATTACATGTATAGTTCACACCGCATAGTCATGCATCTATTCTCAACGCCTAATTATTACAAATCCCTGCTTTCGACCCTGGACTCACTAGGAAACCTATAAGAGCTTATACTTGGGCTTTTTAAAGGAAAACTTGCTGAATCATGATCACACTTAAGTAATTCTCGACGCATCCTTGTACGGAAATGATAATATCTATTTTTGTGCAACAAGCTATGAAACTCAATTTAAATCGGAAATAGAAATTAAACAACAGGGGGTTTCTTGGAAAAAATCATTGAATCTTTCCTCTGATTCCTTATGAAAGACATTTAGTCCATCAAAATAGAAGTTAAAGAGGGTATTTATGCACGTTATGTCCTTTATATGGAAATAAGAGGCCAAGGGGACATTCCCTTGATTCGTACCGATCAGAATTTGACCCCATGAGAAATTGAGTAAAAGGCTGCCGAATTGGCCTATTTCTCGTGTGTACCAATTGAAGTTTTTTGAAAAATGAAGTTTAGAATGAATTTAGTTCGTAGCAAGAGGGATAAAACTGAAATGAAAGAATATTTTTTTTTAGACCATAGTAATAGTATAACTTAACTGGAATTTCTTCAGCATGCTCATTTGACCCGAAGTAGATGTATACATAACAACCAGAAAACTGTCTTTGTTCAAAATTTTGATGCATATGTAAATCAACTCCACAATAACAAAAGTGGATTCTTTGTTATTTTCCTTCTGTATTATTTTAAAAGTTAAGGACTAACTAATGAATCACAAATAAAAAACTAAAAAACAGGGAATGGATTCATAATAGTATCCATATGATTTGTGATAGAACTTATATTTGATATAAATATTAGTAATGTAGAGAGTTAACAAATGAAGTGAGTTCATTAAAAAATCAAAAACAAAAAAATGGCAAAAAAAGAAAGCATTCATTCCCCTTCTATATTTTGCATCTATAGTATTTTTGCCCTGGTGGATCTCTCTTTCATTTAATAAAAACCTAGAATATTGGGTTACTAATCAGTGGAATACTGGTCAATTCGATTTTTTTTTTTAATGATATTCAAGAAAAAAGTATTATAAAAAAAGTTATAGAATTAGAGGAATTCTTTGTCTTGGACGAAATGCAAAAGGAATACCCAGAAACATATCTACAAAAGCTTTGTATCAGAATCTACAAAGAGCTTCGTGTTTATAATTCATAAATCCACATAAAAAAAAAAAAAAGAATACTCGGGTTTCACACACCATTTAAGGGATAGAGAACAAGGAGCATTTCTTAAATTCATTATTATAAGAAAATAAGAAAGAACAATCACATCTAATCTATATCTAATACTAGACTCTTAAGCATAAGGTTGTTTAAAAGGGCAATCTTTAGTTTGATATGATATCGAATATTTTCTACACAGCTTATAGTATACTATTATTATATATAATACGCATACTCTAGGACGAAAGGATTCAAACCTCCAAATAGCGGGATCAAAACCTGTTGCCTTACCATTTGACCATGCCCCATTTATATTCAACACTAATAAACACTAATATTTGTAGTGGTTGGTCATCAGTTCTAGTACAAATATTTATCAAAAAAATTAGATTTTGCTCAGATTTTAATACGTTTATAGATCCAATTAAACTCAATTTATTGATCATTACATATAATTCCATCAGGACTAAGTATAAAAGAAAACAAGTATAAATCAATTTTAAAACTTTAAAATGTTATAATTTAAACATGAAATAATTTAATTCTTTTTATTTATTAAGTTTTATTAGGTAGAATATATATAATTTCTATAAAATATTAAACATATATATATATATATATATTAAAAAAAGTGGATGATATCTCTAGAAATATATATCGATATTAAAATGAAATGTAAATACAATTAAGGGCGGATGTTAGTGGTTCGAGTCCGCGCTTATCTCCAACTAGTAAACTTAACCGATACAAAGGTATACGAGAGCACTCTATTTTTCTAATTTGGCTGTTTGATATATGATTTATCATTCATGGATGTTGATAAGATCCTTCCATTAAGCAACACCTTAGGATGTCATAGCCTTAAAGTTAAGGGCGAGGTTCGTGGATACTTATGCGCCCAAAGACGAGGAAGGGCATAG

mRNA sequence

GTACCCAGAAACGAGGAAGGCATAGTAAGTGACAAAATGCTTCGAGGAGTTGAAAATAGGTGTAGATCTAGAGATTCCCAAATAGTATTTGAAAGCATCACTAGCTTATGCTCTAACCCGAGTAGCATGGGGCATGTGGAATCTTGTGTGAATCAACAAGGACCACCTTGCAAGGCTATACAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCTAGTCTCTTTATTAGCTCCTATTTGTGGTGCACTATTTTGTGGAATGAATTCTTTGTCTTGGACGAAATGCAAAAGGAATACCCAGAAACATATCTACAAAAGCTTTGTATCAGAATCTACAAAGAGCTTCGTATCCTTCCATTAAGCAACACCTTAGGATGTCATAGCCTTAAAGTTAAGGGCGAGGTTCGTGGATACTTATGCGCCCAAAGACGAGGAAGGGCATAG

Coding sequence (CDS)

GTACCCAGAAACGAGGAAGGCATAGTAAGTGACAAAATGCTTCGAGGAGTTGAAAATAGGTGTAGATCTAGAGATTCCCAAATAGTATTTGAAAGCATCACTAGCTTATGCTCTAACCCGAGTAGCATGGGGCATGTGGAATCTTGTGTGAATCAACAAGGACCACCTTGCAAGGCTATACAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCTAGTCTCTTTATTAGCTCCTATTTGTGGTGCACTATTTTGTGGAATGAATTCTTTGTCTTGGACGAAATGCAAAAGGAATACCCAGAAACATATCTACAAAAGCTTTGTATCAGAATCTACAAAGAGCTTCGTATCCTTCCATTAAGCAACACCTTAGGATGTCATAGCCTTAAAGTTAAGGGCGAGGTTCGTGGATACTTATGCGCCCAAAGACGAGGAAGGGCATAG

Protein sequence

VPRNEEGIVSDKMLRGVENRCRSRDSQIVFESITSLCSNPSSMGHVESCVNQQGPPCKAIQIIFFPQGIVMSFYGIASLFISSYLWCTILWNEFFVLDEMQKEYPETYLQKLCIRIYKELRILPLSNTLGCHSLKVKGEVRGYLCAQRRGRA
Homology
[Close]
BLAST of ClCG04G004710 vs. NCBI nr
Match: KAG7528872.1 (hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypothetical protein ISN44_Un153g000180 [Arabidopsis suecica] >KAG7529053.1 hypothetical protein ISN45_Un101g000060 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7529068.1 hypothetical protein ISN45_Un101g000220 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 216 PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLCSDPSSMGHVE 275

[Close]
BLAST of ClCG04G004710 vs. NCBI nr
Match: CAF1728876.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 222 PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLCSDPSSMGHVE 281

[Close]
BLAST of ClCG04G004710 vs. NCBI nr
Match: CAA7013176.1 (unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein product [Microthlaspi erraticum] >CAA7014162.1 unnamed protein product [Microthlaspi erraticum] >CAA7019110.1 unnamed protein product [Microthlaspi erraticum] >CAA7022551.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 91  PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLCSDPSSMGHVE 150

[Close]
BLAST of ClCG04G004710 vs. NCBI nr
Match: CAF4958888.1 (unnamed protein product [Pieris macdunnoughi])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 91  PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLCSDPSSMGHVE 150

[Close]
BLAST of ClCG04G004710 vs. NCBI nr
Match: KAG2275695.1 (hypothetical protein Bca52824_058250 [Brassica carinata])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 281 PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGDSPVAESITSLCSDPSSMGHVE 340

[Close]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.4e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QIIFFPQGIVMSFYGIA LFISSYLWCTILWN
Sbjct: 56 QIIFFPQGIVMSFYGIAGLFISSYLWCTILWN 87

[Close]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match: Q70XZ2 (Photosystem I assembly protein Ycf4 OS=Amborella trichopoda OX=13333 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QI+FFPQGIVMSFYGIA LFISSYLWCTILWN
Sbjct: 56 QILFFPQGIVMSFYGIAGLFISSYLWCTILWN 87

[Close]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match: A1EA19 (Photosystem I assembly protein Ycf4 OS=Agrostis stolonifera OX=63632 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QI+FFPQG+VMSFYGIA LFISSYLWCTILWN
Sbjct: 56 QILFFPQGVVMSFYGIAGLFISSYLWCTILWN 87

[Close]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match: A8Y9I0 (Photosystem I assembly protein Ycf4 OS=Lolium perenne OX=4522 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QI+FFPQG+VMSFYGIA LFISSYLWCTILWN
Sbjct: 56 QILFFPQGVVMSFYGIAGLFISSYLWCTILWN 87

[Close]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match: P46642 (Photosystem I assembly protein Ycf4 OS=Zea mays OX=4577 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QI+FFPQG+VMSFYGIA LFISSYLWCTILWN
Sbjct: 56 QILFFPQGVVMSFYGIAGLFISSYLWCTILWN 87

[Close]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match: A0A6D2I321 (Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10047 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSLCS+PSSMGHVE
Sbjct: 91  PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLCSDPSSMGHVE 150

[Close]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match: A0A498JU90 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_006988 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSL S+PSSMGHVE
Sbjct: 39  PETRKGVVSDEMLRGVENKRRSGDSRIGEAVECRTLDGESPVAESITSLRSDPSSMGHVE 98

[Close]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match: A0A5N6P9A0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13121 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSL S+PSSMGHVE
Sbjct: 52  PETRKGVVSDEMLRGVENKHRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHVE 111

[Close]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match: A0A5N6PQS0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_06722 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSL S+PSSMGHVE
Sbjct: 137 PETRKGVVSDEMLRGVENKHRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHVE 196

[Close]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match: A0A5N6MLP8 (Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 2   PRNEEGIVSDKMLRGVENRCRSRDSQI--------------VFESITSLCSNPSSMGHVE 60
           P   +G+VSD+MLRGVEN+ RS DS+I              V ESITSL S+PSSMGHVE
Sbjct: 221 PETRKGVVSDEMLRGVENKHRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHVE 280

[Close]
BLAST of ClCG04G004710 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 61 QIIFFPQGIVMSFYGIASLFISSYLWCTILWN 93
          QIIFFPQGIVMSFYGIA LFIS YLWCTILWN
Sbjct: 56 QIIFFPQGIVMSFYGIAGLFISCYLWCTILWN 87

The following BLAST results are available for this feature:
BLAST of ClCG04G004710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7528872.19.6e-1362.50hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypo... [more]
CAF1728876.19.6e-1362.50unnamed protein product [Brassica napus][more]
CAA7013176.19.6e-1362.50unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein p... [more]
CAF4958888.19.6e-1362.50unnamed protein product [Pieris macdunnoughi][more]
KAG2275695.19.6e-1362.50hypothetical protein Bca52824_058250 [Brassica carinata][more]
BLAST of ClCG04G004710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD789.4e-1196.88Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
Q70XZ21.6e-1093.75Photosystem I assembly protein Ycf4 OS=Amborella trichopoda OX=13333 GN=ycf4 PE=... [more]
A1EA192.1e-1090.63Photosystem I assembly protein Ycf4 OS=Agrostis stolonifera OX=63632 GN=ycf4 PE=... [more]
A8Y9I02.1e-1090.63Photosystem I assembly protein Ycf4 OS=Lolium perenne OX=4522 GN=ycf4 PE=3 SV=1[more]
P466422.1e-1090.63Photosystem I assembly protein Ycf4 OS=Zea mays OX=4577 GN=ycf4 PE=3 SV=1[more]
BLAST of ClCG04G004710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6D2I3214.7e-1362.50Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS... [more]
A0A498JU901.1e-1161.11Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_006988 PE=4 SV=1[more]
A0A5N6P9A01.1e-1161.11Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13121 PE=4 SV=1[more]
A0A5N6PQS01.1e-1161.11Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_06722 PE=4 SV=1[more]
A0A5N6MLP81.1e-1161.11Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3... [more]
BLAST of ClCG04G004710 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00520.12.5e-1193.75unfolded protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003359Photosystem I Ycf4, assemblyPFAMPF02392Ycf4coord: 58..93
e-value: 4.6E-12
score: 45.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G004710.1ClCG04G004710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid