ClCG04G004140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G004140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	CG_Chr04: 15770887 .. 15771855 (-)
RNA-Seq Expression	ClCG04G004140
Synteny	ClCG04G004140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTGTGACTAATAAAGAATCCAATGAATCATTTGGTTTTGATAAGAAATGACATAGCCCCGAACACCCACGAGCCTTCAACAGGTTAGTACTGATCCATTGAATCAGTCTGCTTTGAATGCTTACATTATGTTGCCCCTTTTCCAAGAAGATTCCTCAATCCTAAGAGGAATGAAGAAAAAGTACTCACTCAAACCCTTGGAATTGTGACTGCTAGCTTCCCACAGTGGGTCAAAAAGGAGGAAGTAATACATATAGTGCAGCAACCATGGGCACTCCAAGTAAACTCTCAGTGAAACACGACAATCCAAGTATGTTTTTCTTACCTTGCAAAATAGGTAAGAAGAAGTTGTTAGATGCAATAATTGACCTAGGAGCTTCTGTGAACATCATACATACATCGTTGTTTTATGAGCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATGTCCTGAATTAATCTTGCTTTAAAAAAGATTGATGTAGGAGAAGGGTCCCTATCTATGGAATTTAATGGGGATGTTAAAAATTCTTTGTCTTGGATAATTTTGCTTCCATTAATTCTTTTGATTCCTGTCAGTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

mRNA sequence

ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

Coding sequence (CDS)

ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

Protein sequence

MTFHKEILEFQKETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVRNVTVVTTVNPFDFPESSEFMNFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNSGEMDGKEESINS

Homology

[Close]

BLAST of ClCG04G004140 vs. NCBI nr
Match: RDY06300.1 (hypothetical protein CR513_09736, partial [Mucuna pruriens])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 2   TFHKEILEFQKETSIGMQQLANQITQLATTVNKL-DTQSGKISTQPEPHVRNVTVV---T 61
           T +   L+FQ+  S  +Q    Q++QLAT++++L  T+SG + +Q  P+ R    V   T
Sbjct: 32  TMNSSNLQFQQNMSAIVQDFKMQVSQLATSISQLQSTESGNLPSQTIPNPRGNASVHHST 91

Query: 62  TVN--PF-----DFPESSEFM-----NFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYV 121
           T+   PF     D   S  FM       L   DL  T + +QLAN S+ +PL  L+DV V
Sbjct: 92  TIGDCPFADAMLDLGASINFMLTSIYKSLNCGDLEPTGITIQLANRSVVQPLSVLEDVLV 151

Query: 122 NVDDLVFLVDFYLLPLQDN 125
            VD L+FL DFY+L ++D+
Sbjct: 152 QVDKLIFLADFYVLDMEDD 170

[Close]

BLAST of ClCG04G004140 vs. NCBI nr
Match: XP_012453231.1 (PREDICTED: uncharacterized protein LOC105775248 [Gossypium raimondii])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVR-NVTVVTTVNPFDFPES 68
           ++Q+ T   +Q+L NQ+++L+  VN+L++Q GK+ +Q EP+ R NV+ +T  +     +S
Sbjct: 10  KYQQRTDASIQELTNQVSKLSMAVNRLESQ-GKLPSQTEPNPRLNVSAITLRSEKVLDKS 69

Query: 69  SEFMNFLRLLDLC-----------------------------------STNVVVQLANPS 128
               NF R   L                                     T V++QLA+ S
Sbjct: 70  LAMQNFSRNCALARGGNVGIKKAMCDLGASINVMSYHIYKLINVGHLKKTGVIIQLADRS 129

Query: 129 LTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNSGEM 133
           +  P G L+DV V V++LVF  DFY++ ++D+ S NS ++
Sbjct: 130 VIYPEGLLEDVLVKVNELVFPADFYIINMEDDNSTNSSDI 168

[Close]

BLAST of ClCG04G004140 vs. NCBI nr
Match: XP_027109017.1 (uncharacterized protein LOC113728855 [Coffea arabica])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 433 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVLKYAKFLKDLCVNK 492

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 493 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 552

[Close]

BLAST of ClCG04G004140 vs. NCBI nr
Match: XP_027109421.1 (uncharacterized protein LOC113729311 [Coffea arabica])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 440 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVPKYAKFLKDLCVNK 499

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 500 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 559

[Close]

BLAST of ClCG04G004140 vs. NCBI nr
Match: XP_027082556.1 (uncharacterized protein LOC113704887 [Coffea arabica])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 440 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVPKYAKFLKDLCVNK 499

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 500 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 559

[Close]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL
Match: A0A371HU36 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_09736 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 2   TFHKEILEFQKETSIGMQQLANQITQLATTVNKL-DTQSGKISTQPEPHVRNVTVV---T 61
           T +   L+FQ+  S  +Q    Q++QLAT++++L  T+SG + +Q  P+ R    V   T
Sbjct: 32  TMNSSNLQFQQNMSAIVQDFKMQVSQLATSISQLQSTESGNLPSQTIPNPRGNASVHHST 91

Query: 62  TVN--PF-----DFPESSEFM-----NFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYV 121
           T+   PF     D   S  FM       L   DL  T + +QLAN S+ +PL  L+DV V
Sbjct: 92  TIGDCPFADAMLDLGASINFMLTSIYKSLNCGDLEPTGITIQLANRSVVQPLSVLEDVLV 151

Query: 122 NVDDLVFLVDFYLLPLQDN 125
            VD L+FL DFY+L ++D+
Sbjct: 152 QVDKLIFLADFYVLDMEDD 170

[Close]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL
Match: A0A6P6TXT1 (uncharacterized protein LOC113704887 OS=Coffea arabica OX=13443 GN=LOC113704887 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 440 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVPKYAKFLKDLCVNK 499

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 500 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 559

[Close]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL
Match: A0A6P6W4E6 (uncharacterized protein LOC113728855 OS=Coffea arabica OX=13443 GN=LOC113728855 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 433 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVLKYAKFLKDLCVNK 492

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 493 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 552

[Close]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL
Match: A0A6P6S520 (uncharacterized protein LOC113687487 OS=Coffea arabica OX=13443 GN=LOC113687487 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 440 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVPKYAKFLKDLCVNK 499

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 500 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 559

[Close]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL
Match: A0A6P6W4D6 (uncharacterized protein LOC113729311 OS=Coffea arabica OX=13443 GN=LOC113729311 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQS-GKISTQPEPHVRNVTVVT------TVNP 68
           +FQ++T  GM+ +  +I+Q+AT +N+L++ + GK+ +QPE + RNV           VN 
Sbjct: 440 QFQQDTKAGMKDMEARISQMATAINRLESHAYGKLPSQPEVNPRNVPKYAKFLKDLCVNK 499

Query: 69  FDFPESSEFM---NFLRLLD------------LCSTNVVVQLANPSLTKPLGFLKDVYVN 128
                    M   N   +L             L  T +++QLA+ +   P G ++DV V 
Sbjct: 500 RKLRGDERVMVGENVSAVLQRKLPPKCGDPGPLKETGIIIQLADRTCAYPDGIVEDVLVQ 559

The following BLAST results are available for this feature:

BLAST of ClCG04G004140 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY06300.1	2.7e-09	37.41	hypothetical protein CR513_09736, partial [Mucuna pruriens]	[more]
XP_012453231.1	6.0e-09	30.00	PREDICTED: uncharacterized protein LOC105775248 [Gossypium raimondii]	[more]
XP_027109017.1	2.8e-06	30.99	uncharacterized protein LOC113728855 [Coffea arabica]	[more]
XP_027109421.1	2.8e-06	30.99	uncharacterized protein LOC113729311 [Coffea arabica]	[more]
XP_027082556.1	2.8e-06	30.99	uncharacterized protein LOC113704887 [Coffea arabica]	[more]

BLAST of ClCG04G004140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G004140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371HU36	1.3e-09	37.41	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_09736 P...	[more]
A0A6P6TXT1	1.3e-06	30.99	uncharacterized protein LOC113704887 OS=Coffea arabica OX=13443 GN=LOC113704887 ...	[more]
A0A6P6W4E6	1.3e-06	30.99	uncharacterized protein LOC113728855 OS=Coffea arabica OX=13443 GN=LOC113728855 ...	[more]
A0A6P6S520	1.3e-06	30.99	uncharacterized protein LOC113687487 OS=Coffea arabica OX=13443 GN=LOC113687487 ...	[more]
A0A6P6W4D6	1.3e-06	30.99	uncharacterized protein LOC113729311 OS=Coffea arabica OX=13443 GN=LOC113729311 ...	[more]

BLAST of ClCG04G004140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004140.1	ClCG04G004140.1	mRNA