ClCG04G004110 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G004110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DUF4283 domain-containing protein
Location	CG_Chr04: 15758362 .. 15759083 (+)
RNA-Seq Expression	ClCG04G004110
Synteny	ClCG04G004110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGTCCACTAAGTATGGGCTTGTGAATTTTTGGACCCTCTCAGGTGGTTTGGGCTCGAGCAGTTCTAGCGGGGGTGGCCTGGGAGCTCATAACTCGATGGACGCTCGTCTCCTGGTTTTGATGGTTTACGATCCGATTCAGCAATTGAAATTCCTTCGGGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCCGTTCCCCATCCTCCATGCAGTTGGACTTCACCCTTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGCGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGGTTATTCATTGTCTTACGAAATGCATTTGGGGGAAGGGGAGATGTCGAATATTACGTTGTTGGAGAATGGCTCATTATCTTCCAATTCTATCGTGCCGAGTCAAGAGATTGGGTCTTTGCGAATGGTCTGTGGCATCTTGGAGGTAAGCCCATCTTACTTTGTAAATGGTTCCCAAGGATTGTGCCTTAGTCCTTTGTTTTTTATTTTGTTCCTGTATGGATCAAGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAGGGAAACCAATTGCCTATGATATGACAACTAAAGAAAGGCGTAGGTAG

mRNA sequence

ATGGGCAGTCCACTAACAATTGAAATTCCTTCGGGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCCGTTCCCCATCCTCCATGCAGTTGGACTTCACCCTTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGCGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAGGGAAACCAATTGCCTATGATATGACAACTAAAGAAAGGCGTAGGTAG

Coding sequence (CDS)

ATGGGCAGTCCACTAACAATTGAAATTCCTTCGGGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCCGTTCCCCATCCTCCATGCAGTTGGACTTCACCCTTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGCGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAGGGAAACCAATTGCCTATGATATGACAACTAAAGAAAGGCGTAGGTAG

Protein sequence

MGSPLTIEIPSGGQSRVGIEGVANLKSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPYLLARIHIELWTDRGLVVIASAVGKPIAYDMTTKERRR

Homology

[Close]

BLAST of ClCG04G004110 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 49/95 (51.58%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 27  SSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPYLL 86
           S+WASLF +     L +T P   G+ ++VVPSEEV+   IR+WE SLV           L
Sbjct: 143 STWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLV-----VPVWIRL 202

Query: 87  ARIHIELWTDRGLVVIASAVGKPIAYDMTTKERRR 122
            RI +ELWT+ GL V+ASAVGKPI  D+ TKERRR
Sbjct: 203 GRIPMELWTEAGLAVVASAVGKPITLDLATKERRR 232

[Close]

BLAST of ClCG04G004110 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 231 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 290

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 291 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 350

[Close]

BLAST of ClCG04G004110 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 147 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 206

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 207 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPA 266

[Close]

BLAST of ClCG04G004110 vs. NCBI nr
Match: KAA0062320.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 350 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 409

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 410 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 469

[Close]

BLAST of ClCG04G004110 vs. NCBI nr
Match: TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPYL 85
           KS+WASLF + S   L +TLP + G+K+VV P EEV++  I++WE SLVGQ +D+K PY 
Sbjct: 293 KSTWASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYT 352

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 353 VIQHLVEKIWGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLDDKSMLLRKWTPG 412

[Close]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.0e-16
Identity = 49/95 (51.58%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 27  SSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPYLL 86
           S+WASLF +     L +T P   G+ ++VVPSEEV+   IR+WE SLV           L
Sbjct: 143 STWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLV-----VPVWIRL 202

Query: 87  ARIHIELWTDRGLVVIASAVGKPIAYDMTTKERRR 122
            RI +ELWT+ GL V+ASAVGKPI  D+ TKERRR
Sbjct: 203 GRIPMELWTEAGLAVVASAVGKPITLDLATKERRR 232

[Close]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 147 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 206

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 207 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPA 266

[Close]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 350 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 409

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 410 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 469

[Close]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +TLP   G+K+VV+P+EEV++  IR+WE SLVGQ +DAK PY 
Sbjct: 231 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 290

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 291 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 350

[Close]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL
Match: A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-14
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 26  KSSWASLFRSPSSMQLDFTLPMVEGNKVVVVPSEEVLEVRIRMWERSLVGQFVDAKSPYL 85
           KS+WASLF + S   L +TLP + G+K+VV P EEV++  I++WE SLVGQ +D+K PY 
Sbjct: 293 KSTWASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYT 352

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 353 VIQHLVEKIWGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLDDKSMLLRKWTPG 412

The following BLAST results are available for this feature:

BLAST of ClCG04G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060724.1	1.6e-15	51.58	hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466...	[more]
XP_008460524.1	3.1e-14	31.98	PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo]	[more]
TYK26656.1	3.1e-14	31.98	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0062320.1	3.1e-14	31.98	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK18951.1	6.9e-14	31.98	uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG04G004110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V084	8.0e-16	51.58	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5D3DSG9	1.5e-14	31.98	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V507	1.5e-14	31.98	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CC83	1.5e-14	31.98	uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=...	[more]
A0A5D3D5X6	3.4e-14	31.98	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of ClCG04G004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004110.1	ClCG04G004110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity