ClCG04G003990 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G003990
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 15324422 .. 15324649 (+)
RNA-Seq ExpressionClCG04G003990
SyntenyClCG04G003990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAGCCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGA

mRNA sequence

ATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAGCCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGA

Coding sequence (CDS)

ATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAGCCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGA

Protein sequence

MKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPAA
Homology
BLAST of ClCG04G003990 vs. NCBI nr
Match: KCW87084.1 (hypothetical protein EUGRSUZ_B03618 [Eucalyptus grandis])

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKN 60
          M+  GKA M M PL+ FQVPMREP+KGPKARSA +TKPP PG  V SSAV+ ASGTLH  
Sbjct: 1  MQRTGKAAMLMTPLRNFQVPMREPKKGPKARSAQMTKPPLPGNAVESSAVMRASGTLHMK 60

Query: 61 GKTMKPIIANRDPAA 76
          GK  KP  A++ PAA
Sbjct: 61 GKMEKPRRASKGPAA 75

BLAST of ClCG04G003990 vs. NCBI nr
Match: GFD51465.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 76.6 bits (187), Expect = 9.9e-11
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 9  MFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPII 68
          MF+ P++ F  P+++PQKGP A  A +T PPFPGKVV SSAV  ASG  H NG  +KP I
Sbjct: 1  MFITPVRNFHEPIKDPQKGPNALWAQMTNPPFPGKVVESSAVTRASGIAHINGNIVKPKI 60

Query: 69 ANRDPAA 76
          A   PAA
Sbjct: 61 ARSGPAA 67

BLAST of ClCG04G003990 vs. NCBI nr
Match: ONK73361.1 (uncharacterized protein A4U43_C04F30430 [Asparagus officinalis])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 35/65 (53.85%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 11 MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 70
          M P + FQV MREP KGPKAR A  TKPP P +   SS VI A G     GK  KP I  
Sbjct: 1  MTPERNFQVAMREPGKGPKARWAQRTKPPLPWRAAASSTVIRALGMDQTKGKRRKPRIER 60

Query: 71 RDPAA 76
          R  AA
Sbjct: 61 RGAAA 65

BLAST of ClCG04G003990 vs. NCBI nr
Match: ABG22080.1 (hypothetical protein LOC_Os12g41634 [Oryza sativa Japonica Group])

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 20 PMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPA 75
          PM +P+KGP ARSA  T PPFPG  V SSAV++ SGT    GK  K   AN  PA
Sbjct: 8  PMSDPEKGPNARSAQTTNPPFPGIAVESSAVMSDSGTAQMTGKMRKLSSANSRPA 62

BLAST of ClCG04G003990 vs. ExPASy TrEMBL
Match: A0A059D9C1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03618 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKN 60
          M+  GKA M M PL+ FQVPMREP+KGPKARSA +TKPP PG  V SSAV+ ASGTLH  
Sbjct: 1  MQRTGKAAMLMTPLRNFQVPMREPKKGPKARSAQMTKPPLPGNAVESSAVMRASGTLHMK 60

Query: 61 GKTMKPIIANRDPAA 76
          GK  KP  A++ PAA
Sbjct: 61 GKMEKPRRASKGPAA 75

BLAST of ClCG04G003990 vs. ExPASy TrEMBL
Match: A0A699WV44 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_923434 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.8e-11
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 9  MFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPII 68
          MF+ P++ F  P+++PQKGP A  A +T PPFPGKVV SSAV  ASG  H NG  +KP I
Sbjct: 1  MFITPVRNFHEPIKDPQKGPNALWAQMTNPPFPGKVVESSAVTRASGIAHINGNIVKPKI 60

Query: 69 ANRDPAA 76
          A   PAA
Sbjct: 61 ARSGPAA 67

BLAST of ClCG04G003990 vs. ExPASy TrEMBL
Match: A0A0A9E3F8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/65 (56.92%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 11 MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 70
          M  L+ F VP  EP  GPKARSAH TKPP PG    SSAV + SGT H  GKT KP    
Sbjct: 1  MTQLRYFHVPRSEPASGPKARSAHRTKPPLPGSAAASSAVTSDSGTPHAKGKTRKPRSVK 60

Query: 71 RDPAA 76
            PAA
Sbjct: 61 SGPAA 65

BLAST of ClCG04G003990 vs. ExPASy TrEMBL
Match: A0A5P1F9P4 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F30430 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 35/65 (53.85%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 11 MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 70
          M P + FQV MREP KGPKAR A  TKPP P +   SS VI A G     GK  KP I  
Sbjct: 1  MTPERNFQVAMREPGKGPKARWAQRTKPPLPWRAAASSTVIRALGMDQTKGKRRKPRIER 60

Query: 71 RDPAA 76
          R  AA
Sbjct: 61 RGAAA 65

BLAST of ClCG04G003990 vs. ExPASy TrEMBL
Match: H2KX63 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g41634 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 20 PMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPA 75
          PM +P+KGP ARSA  T PPFPG  V SSAV++ SGT    GK  K   AN  PA
Sbjct: 8  PMSDPEKGPNARSAQTTNPPFPGIAVESSAVMSDSGTAQMTGKMRKLSSANSRPA 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KCW87084.12.4e-1765.33hypothetical protein EUGRSUZ_B03618 [Eucalyptus grandis][more]
GFD51465.19.9e-1156.72hypothetical protein [Tanacetum cinerariifolium][more]
ONK73361.13.3e-0653.85uncharacterized protein A4U43_C04F30430 [Asparagus officinalis][more]
ABG22080.19.6e-0656.36hypothetical protein LOC_Os12g41634 [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A059D9C11.2e-1765.33Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03618 PE=4 SV... [more]
A0A699WV444.8e-1156.72Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_923434 PE=... [more]
A0A0A9E3F81.2e-0956.92Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A5P1F9P41.6e-0653.85Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F30430 PE=4... [more]
H2KX634.6e-0656.36Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g416... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003990.1ClCG04G003990.1mRNA