ClCG04G003870 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G003870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DUF4283 domain-containing protein
Location	CG_Chr04: 15026372 .. 15026768 (+)
RNA-Seq Expression	ClCG04G003870
Synteny	ClCG04G003870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTTGGCGTTCGGTCCCGATGAATCAAGTGGGGTCCATAAGTTGCCGTCTGGGTCTCGCCTATTTAGGGTTGGTTCATGTCATGATGAAAGTCGGTCAACATGTTAGTGGTCCTCCCTATTGTGTGCTCCGAAGTCTGATGAGTTGTTGTTTACTCCGCCTAAGATGGTGGGAGATGTGGTGGTAGTTGAACCATCTGAGAAGGTGCTAAATGTGGGGTGTAGTCTATGGGAGAATTCTTTGGTTGGTCAATTTGTGATGCTACATTGTCGTATATTGTTATTCAACGCTTAGTTACCCATATATGGGGTAAGGTTGAGATGTCGACGATTACTTTAATGAAAACTGGCCTTATTATTTTCCAATTCTGCAAGGCGGAGTCAAGGGACTAG

mRNA sequence

ATGGGTTGTTGGCGTTCGGTCCCGATGAATCAAGTGGGGTCCATAAGTTGCCGTCTGGGTCTCGCCTATTTAGGGTTGGTTCATGTCATGATGAAAGTCGGTCAACATTGGTCCTCCCTATTGTGTGCTCCGAAGTCTGATGAGTTGTTGTTTACTCCGCCTAAGATGGTGGGAGATGTGGTGGTAGTTGAACCATCTGAGAAGGTGCTAAATGTGGGGTGTAGTCTATGGGAGAATTCTTTGGTTGGTCAATTTGTGATGCTACATTGTCTTACCCATATATGGGGTAAGGTTGAGATGTCGACGATTACTTTAATGAAAACTGGCCTTATTATTTTCCAATTCTGCAAGGCGGAGTCAAGGGACTAG

Coding sequence (CDS)

ATGGGTTGTTGGCGTTCGGTCCCGATGAATCAAGTGGGGTCCATAAGTTGCCGTCTGGGTCTCGCCTATTTAGGGTTGGTTCATGTCATGATGAAAGTCGGTCAACATTGGTCCTCCCTATTGTGTGCTCCGAAGTCTGATGAGTTGTTGTTTACTCCGCCTAAGATGGTGGGAGATGTGGTGGTAGTTGAACCATCTGAGAAGGTGCTAAATGTGGGGTGTAGTCTATGGGAGAATTCTTTGGTTGGTCAATTTGTGATGCTACATTGTCTTACCCATATATGGGGTAAGGTTGAGATGTCGACGATTACTTTAATGAAAACTGGCCTTATTATTTTCCAATTCTGCAAGGCGGAGTCAAGGGACTAG

Protein sequence

MGCWRSVPMNQVGSISCRLGLAYLGLVHVMMKVGQHWSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQFVMLHCLTHIWGKVEMSTITLMKTGLIIFQFCKAESRD

Homology

[Close]

BLAST of ClCG04G003870 vs. NCBI nr
Match: KAA0046247.1 (uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-13
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P EKV++ G  +WENSLVGQ         V+ 
Sbjct: 296 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEKVIDQGIKVWENSLVGQLIDSKLPYTVIQ 355

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 356 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 387

[Close]

BLAST of ClCG04G003870 vs. NCBI nr
Match: TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P E+V++ G  +WENSLVGQ         V+ 
Sbjct: 296 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQ 355

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 356 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 387

[Close]

BLAST of ClCG04G003870 vs. NCBI nr
Match: XP_008463187.1 (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P E+V++ G  +WENSLVGQ         V+ 
Sbjct: 114 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQ 173

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 174 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 205

[Close]

BLAST of ClCG04G003870 vs. NCBI nr
Match: KAA0049771.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK12106.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-12
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQ-------FVMLH 96
           W+SL        LL+T PK +GD +VV P E+V++ G  +WENSLVGQ       + ++ 
Sbjct: 119 WASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVGQLIDAKLPYAVIQ 178

Query: 97  CLTH-IWGKVEMSTITLMKTGLIIFQFCKAES 121
           CL   IWGK+EMS IT+++  LI FQF + +S
Sbjct: 179 CLVEKIWGKIEMSIITILENDLICFQFRRPKS 210

[Close]

BLAST of ClCG04G003870 vs. NCBI nr
Match: KAA0042316.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQ-------FVMLH 96
           W+SL        L +TPPK +GD +VV P E+V+  G  +WENSLVG+       +V++H
Sbjct: 163 WASLFRTSTEGSLPYTPPKAIGDKIVVVPPEEVIVQGIRVWENSLVGKLIDANLPYVVIH 222

Query: 97  CLTH-IWGKVEMSTITLMKTGLIIFQFCKAES 121
            L   IWGK+EM TIT+++  LI FQF  A+S
Sbjct: 223 RLVEKIWGKIEMPTITILENDLICFQFRWAKS 254

[Close]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P EKV++ G  +WENSLVGQ         V+ 
Sbjct: 296 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEKVIDQGIKVWENSLVGQLIDSKLPYTVIQ 355

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 356 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 387

[Close]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL
Match: A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P E+V++ G  +WENSLVGQ         V+ 
Sbjct: 296 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQ 355

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 356 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 387

[Close]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL
Match: A0A1S3CJ11 (uncharacterized protein LOC103501395 OS=Cucumis melo OX=3656 GN=LOC103501395 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQF--------VML 96
           W+SL      + LL+T PK++GD +VV P E+V++ G  +WENSLVGQ         V+ 
Sbjct: 114 WASLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQ 173

Query: 97  HCLTHIWGKVEMSTITLMKTGLIIFQFCKAES 121
           H +  IWGK+EM  IT+++  LI FQF +++S
Sbjct: 174 HLVEKIWGKIEMPIITILENDLICFQFRRSKS 205

[Close]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL
Match: A0A5A7U851 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00400 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQ-------FVMLH 96
           W+SL        LL+T PK +GD +VV P E+V++ G  +WENSLVGQ       + ++ 
Sbjct: 119 WASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVGQLIDAKLPYAVIQ 178

Query: 97  CLTH-IWGKVEMSTITLMKTGLIIFQFCKAES 121
           CL   IWGK+EMS IT+++  LI FQF + +S
Sbjct: 179 CLVEKIWGKIEMSIITILENDLICFQFRRPKS 210

[Close]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL
Match: A0A1S4E4L1 (uncharacterized protein LOC103502197 OS=Cucumis melo OX=3656 GN=LOC103502197 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-12
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 37  WSSLLCAPKSDELLFTPPKMVGDVVVVEPSEKVLNVGCSLWENSLVGQ-------FVMLH 96
           W+SL        L +TPPK +GD +VV P E+V+  G  +WENSLVG+       +V++H
Sbjct: 163 WASLFRTSTEGSLPYTPPKAIGDKIVVVPPEEVIVQGIRVWENSLVGKLIDANLPYVVIH 222

Query: 97  CLTH-IWGKVEMSTITLMKTGLIIFQFCKAES 121
            L   IWGK+EM TIT+++  LI FQF  A+S
Sbjct: 223 RLVEKIWGKIEMPTITILENDLICFQFRWAKS 254

The following BLAST results are available for this feature:

BLAST of ClCG04G003870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046247.1	4.5e-13	44.57	uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]	[more]
TYK18951.1	1.3e-12	43.48	uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]	[more]
XP_008463187.1	1.3e-12	43.48	PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo]	[more]
KAA0049771.1	8.5e-12	44.57	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK12106.1 DUF4283...	[more]
KAA0042316.1	1.9e-11	45.65	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283...	[more]

BLAST of ClCG04G003870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G003870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWG5	2.2e-13	44.57	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3D5X6	6.4e-13	43.48	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CJ11	6.4e-13	43.48	uncharacterized protein LOC103501395 OS=Cucumis melo OX=3656 GN=LOC103501395 PE=...	[more]
A0A5A7U851	4.1e-12	44.57	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E4L1	9.2e-12	45.65	uncharacterized protein LOC103502197 OS=Cucumis melo OX=3656 GN=LOC103502197 PE=...	[more]

BLAST of ClCG04G003870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G003870.1	ClCG04G003870.1	mRNA