ClCG04G003630 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G003630
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ribosomal RNA-processing protein 17-like
Location	CG_Chr04: 14320941 .. 14327256 (-)
RNA-Seq Expression	ClCG04G003630
Synteny	ClCG04G003630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCGGTAAACTCAAGTTTGCTATTCTCTCTTTCACGAGAGTATTACAGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGTTTTCCTTCGAACTAAGCATGAAGTTGATTAATGGGTTAATTTGGACTTTTGTTTGATTTCGATTTCTTCTATCTGTTTTCCTCATGTGGTTAATTGTTGTTTTTATTAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGGTTTGGAAACCTTTTCTATTTTTGGGAACGAATTGCTGAAAACATAGCTACAGTGAGAGTTTCGGACTTGCCTGTCAATAATACGATTTTTCTAGCATTCAATGAGCATAGGACAGCGCATGAAGGAATTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCAGAAGGTAGAAAGAGAACCAGAAACCATTACTTTGATGAAATGTTAAAATTTCCTGCGGACTCTGGAGATAAGGCTGGCTGTAATCTAGAGATGCCATTGCTGTTCTTCCACCTTGGATTTATCCAAGGTTATATGATTTTTTTTTTTTTTCAATCCTTAGTTCCAGAGGGCTGTTAGGTTTCAGACCTGCAAATATCAAACCTAACAAAGAATCCCCCAAACCAAACAGAGATATCTTCTCTTTTTTGTCAGCCTAAACGAGATCAAAACAAAATTTCTCAGAATGAAAACATAACAAGTACAATAACCAAAAGTGTTTCCTAGGTTATACCACTTGTCCTCTTTGAAAGACTGTTTCGTGTCGGACGTGTGGTTTGGTTGGAGAATTCTGCTTCCTTCTCCTTTTGCTTCCGCCAGGCATTGTCCAATAGGGAAACGACGGAGGTGGTCTTTCTTCTTTCCTTGATTGAGGGTTTTGACTTTAGAGTGGGGAGAAAGGATGTTCGTGTTTGGAGTCCTGATTCGATGGGGGGCTTTTCTTGTAAGTCGTTATTTAGGATTCTTGTGAATCCTTCTCCTGTAGTCGAGTCAGTCTTTGATGTTTTATGGAGGATTAAGATTCCTAAGAAAGTCAAATTCTTTGTCTGGCTAGTGTTGTATTGCTTGGTCGTGTGAATACGGTGGATAAGATTTTGAGAAAGATGCTTTCGTTAATAGGTCCTTTTTGTTGCATTCCTTGTCGAAAGGTGGAGGAAAATTTGGATCAACTTCTCTGGAAATGCCAATATGCGAGATCTGTTTGGATCTTATTCTTACAGGAGTTTGATTTCTCGTTCGTTGGCAGAGGGACATTTGGTTGCTAATCAGGGAGATCCTTCTCCATCCGCCCTTCAAAGAGAAAGGGTGTTTTCTTTGGCTTGTAGGGGCCTATGCTTTGTTGTGAGATTTGTGGGTGAGAGAAACAATAGAGTGTTTAGGGGTATGGAGAAGAACCCTAGTGAGATTTGGTCTTTGGTGAGATTTCATGTTTCTCTTTAGGCTTCGATTTCGAAGTCTTTTTGTAATTACACTCTAGGCAATATCTTACCTAGTTTGAAGCGCTTTCTTAGTAGGTTTTTTGTGGGTTGTTTTTCTTTTTTTCTTTTTTATTTTTTTTATTTTTTATGCCATTGTATTCTTTCCTTTTTTTTTTTCGCAATGAAAGCAGTTGTTTGTATATAAAAAGAAGAAAAATAACCAAAAGTGAAAGATAACTCCCCAGCACAATTCGAGACAGTTGGAATTCCCTCCTTCAACCTTCAACTTCAGAATCACCAAGTTTTCCCTCCCTTCTACAAGACCCCCAAAGCCTCTCTTAGACCTCCATGGTGGTCCCTTGGTGGTCCCCATCCTCTAACCGAATTCGTTCCACGTCCCACTTTCTTTTCCCCCTTGTAGAACTCCCTTCTTACCCTTGCGATAATAAGTTTAACGAATTGAGGGTCTCACATGGTCACATCGGGTATTTAGGAGACTTCAGTTGTCTCTCTTTCCTGGAGCTACAGGGAATGATTTTTGAACTTAGTTGTACATTCATCAAGACGACAAAGTTAGAAGGTGTGCTTCTGTAACTTCTTTTTTAAAAATAGTAAGTCGAGCTTCAATTAGAAAAAAAGTTGAAAGAATGTATAACGACATACATTGGTACAAGAAATAGCACCAATCCAAAAGAATGAAACCCAACTGAAAATTACAAAAAGCCTTAACCATGGAAGCTCATTACGAAGCATTGGACCTACTAAGCTCTCACAACTCATGACCTTACTTGAACAATATTTGTTCTATAGGTTGTACAACTGTGCCCTTGAGTTCTAAAGAAAATAACCTCCTGCAACTCCCTCTTAGATCTCTCAACACCTTCAAAAAGTCTACCATTCCTCTCAAGCCATATTCCCTAAAGAATGACGAAGAAAGATGCTTGCCAAAGAATTTAACCCATCTCCTTGTAAGGCAGAAACAACAAAAACTCCTCCATCAAAGCCCTTCAATCCCAATTTGTTTCTTCACTTAAGCTCTGAGAAAAATGTTACGGCTTTAAGATTTTGGTCATACTACTGCAAATGATGCAAATGATGGTAAGGGAGGGTGAGGCAAAGGCGATTTAAGTTGTGAGAACTTGCCTTAAAGCTTTTTTGTTTCTGTTAATTTTGGGGAAAATTGCAAAAACCACCCCTGAACAATGAGGTTGGTTATAATCACACCCATGAACTTTCAATTTGATCAATCATCCTCTTGGAGTTTCTTAATGGTTGCAATCAACTCCTTTTATTAAATTAATTTTTATTTATAATTTCTTCTTCCTCTCTTTGGTTCTCTCTCCTCTCTTTTCATCATCTTTCATTCTCAACTCTAAAAGTGAAGCCTTAGTTTCATGGACCCATTGCTCTCCAAGAAATCATGGGATATCTTAACCCTCTTCTCTCCATTCACACGCACATTTGATGTTGTACCATTGGTAGCTATTTCTATGTTAAAACGAAGACGTTCTCTAGAAAATTGGGTGGTTCATTTTGGAATGAAAAAGGGTTTAACTTAGTAGATGAAAACCCTTCACCTTGATTCCTCTTTGCCTTAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGGTGAAGCAACCATAGTCCCGACCCTTTTGCTGACGGAAGAAAGCTGAAATTCTTTGAATTGGGATTATTGGTAAGTTCGTTTTACTTTTTCTCTATTTTCATTTGTTGCATTGCAACAATTCTTAGAAATTTAGCAATCTTCTTGTGTTGAATTTGTGTACGAAACTGATTCGTCGGTTCACCAAATTCTATTTGGATGGCTAAGTAATTCAAAAACTTAAGCTGGGCAAGATTTTTCGATCGAAGTTATAGAATTTTTGCTCCAAAGTTTTCTCATATTTCCCAATCGCTCAATTGGTGGGCATAATACTGTGGTAATGTGACAGAGAGAGATGAGACATTCTAACAGTAAATCTCTGTAGCTAGAGGAGAGACAACAGATGAGAATAACAGAGGATGAAAAGGGAGAAGAGAGAACAAAAGAGAGGAAGGAGAAACTACAAATATCCAAAAAAAAGAAAAAGATTAAATTAATAAATGGGGTTGATTGCAACCATTAAGAACCACAAGGGCATAATTGATCAAATTGAAAGCTCATGGGTGTAATTGTTAGCAACCTCATAGTTTAGGAGTGGTTTTTGCAATTTTTCCTTAATTTTAATAGTGAATTCCCCCAAGATTTTTTTTTGTTTATTTATTTTTTAAAAATTTCTTTTCTTGATTTTTCCTTTTTATTTTGTGGGAGGGAGCTCGATAAGAAACCCATCAACTGTCATGACAAGCTTCAAAAGAATGCCTTACATGGTTTCGTCTCCTCGTTGTGCTCTATTTGCAAACAATTAGAAGCACAAAGTCACCTTATGATATCTTGTACATACGCCAGCTCCTTTTGGAACCACCTTACATTGTTTTGTCTCCTCATTTGTGCTCTATTTGCAAACAACAATTAAAATCACAAAATCACCTTATGGTATCTTGTACGTACACTAGCTTCTTTCGGAACCATCTCCTTTCAACATTTAGTTAGAACACGACTCTCCTGGAAGATCCTGAATCTCTCCTATCCCATGCCTTTGGAGGGCACCTTTTCCAAAAGGAAAATAAGCTTCTTTGGAAAAGTTTCATTACAGCATTCTGTTGGAACATTTGACTCCAAGAAAGGAATAGAAGAATCTTCCATGAAAAAGGGCTCTCTTGTTATAGATTTTGTGATGCTATCTTTAACCCCGTTGTGACTTAGTGTAAATGCTCCCCTTATTCTATCACTATACCTATACATCTTATACTAGTGTATAACCTGGAAAGTCTTCTGGAATGATATTGTATTGGGGCTTACCCTCTTCTTTTGTAATTTCATACATCGATCAAATTGTTTCTGATAAAAAAATAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGATTGTATATATAATAATCTGTTAGGGTGAGTAGATTGTTGAGTTTTTGGCAAAATATTAGAAGTGCAGTTGTCTCACATTGGAAAAACTCAAGGAAGTGATGAGCTCCATGCACTATAAAAGGATCTTATGCCTTTGGTTTTAAGTCGTCCTAGTTAGAAACACTTTAAGTTTAGGTGTGCTATAACTCTAGTTAAATTTCCTTTCATATTTGAGAGTGGATTAAAGAGTGTGATTGATACAAAAGTTTTGAGAGAGTACTCTTGTAATTGGATTGAGAGAGAATTATTCTGTGTGATAGTAATAATTTTTCATATAATGGATTTTATTTGGTCCGTGGTTTTTTCTCCGGTTTGGAGTTTTTCCATGTTAATTTTTGTGTTTCTAGTTTTATTGTTTTCTTTTAATTTCTTTGTTATTTTTCAGCTTATTCTTGCTAGTGGGAGATTTTTCTCCAACCCATATATCTAATCATCCTTAAAAATGCTACAAATTAGTCATATTGTATGTATTGTATTATATGAAGACTTTTATTGGACAAGTTGTGTAAAATTTTATTGATTAGTGGAAACAAGGAAGAGAACAGCCTGTGCATATATCTTTTTCTTCTATATTATTGGGATATGTTCTCAAGAGTCAAAGTCCTAAATTATTATCTTGCAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGGTACTTTACAGACGATTGCATATTAAAATATTAAGTGCGTTTGATAAGCCATTTGCACCAGCTTGCTTAGACCACAGATCTGTTCAATCAATTCTAATGACATATTAATTACAAGTTCTTCTCCAATACAAGTGTAAAAACAAAGTATCCATCTAAAAAAATCAGATCAGATATTATTTATGTTCATAGGGAAGCTAAAAGTCAGGTTTATATGAAAAATAAGTGGCAAGTTGATAAAATTGATAATGGATATGCATTCTTTTAGAAGAACAAGAATCTTCATTTCTATATACTCCAGAACTTGGAACAGTATTTTGATAATTTATTACTGGAAGTGTCATTTATGTTCCAGAGCAGATAAATGTTGCCTAATTTTGATCCAAACATACTTTTGTTTTCCTCTGTAGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAACTATTTATTCACTCTTTACTGAATGTCCGATGTGACGTGATTTATATGTTGTCCCATGAGAATATGGAGCGATCTCGCATTGGCTAGGGAATTTGAGGGTCTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTATGAGAAGCTGAAATCATTCATTCAGAACTCCGAGAAGAAAAAATAACATATTATCCAAGTATCGAAAAATCCTCGTATTACGTTACTGAAAAGGATGTACA

mRNA sequence

GCGGCGGTAAACTCAAGTTTGCTATTCTCTCTTTCACGAGAGTATTACAGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAACTATTTATTCACTCTTTACTGAATGTCCGATGTGACGTGATTTATATGTTGTCCCATGAGAATATGGAGCGATCTCGCATTGGCTAGGGAATTTGAGGGTCTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTATGAGAAGCTGAAATCATTCATTCAGAACTCCGAGAAGAAAAAATAACATATTATCCAAGTATCGAAAAATCCTCGTATTACGTTACTGAAAAGGATGTACA

Coding sequence (CDS)

ATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTGACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACGACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Protein sequence

MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDEEEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQSKRDKKKGRKKK

Homology

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BLAST of ClCG04G003630 vs. NCBI nr
Match: XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-78
Identity = 170/210 (80.95%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+NDGEEG E+AQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ
Sbjct: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQ 68

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA+RRKRIEARK            KR+LEKDLVLYGGVLPADRPVDE+N+DHE+ +++
Sbjct: 69  QEEAIRRKRIEARK------------KRRLEKDLVLYGGVLPADRPVDEENDDHEEGEED 128

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKPLA  SETT YDSGNIK+TV TSEVSREEEID I+KPQTATTQLFAKDKKHNLP+ 
Sbjct: 129 EEEKPLAPFSETTTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVT 188

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV+KQRSRPK +SKRDK+KG+KKK
Sbjct: 189 KKKPFKKVAKQRSRPKARSKRDKRKGKKKK 206

[Close]

BLAST of ClCG04G003630 vs. NCBI nr
Match: XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia])

HSP 1 Score: 282.3 bits (721), Expect = 3.3e-72
Identity = 165/210 (78.57%), Postives = 179/210 (85.24%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK EK+LVLYGG+LPADRPVDEQN+DHE    E
Sbjct: 61  QEEAKRRKRIELRK------------KRKEEKELVLYGGILPADRPVDEQNDDHE----E 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKP A +SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATTQL AKDKKHNLPI 
Sbjct: 121 EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV+KQ+SRPKP+SKRDKKKGRKKK
Sbjct: 181 KKKPFKKVAKQKSRPKPRSKRDKKKGRKKK 194

[Close]

BLAST of ClCG04G003630 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-71
Identity = 160/210 (76.19%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK+EKDLVL+GGVLPADRPVDEQN+D +D D++
Sbjct: 61  QEEAKRRKRIEERK------------KRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDED 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKPLA +SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LPI 
Sbjct: 121 EEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV++++SR K +SK DKKKGRKKK
Sbjct: 181 KKKPFKKVARKKSRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of ClCG04G003630 vs. NCBI nr
Match: XP_008455785.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 3.7e-71
Identity = 165/210 (78.57%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           +EEAMRR RIEARK            KRKLEKDLVLYGGVLPADR VD+QN+D ED    
Sbjct: 61  KEEAMRRMRIEARK------------KRKLEKDLVLYGGVLPADRAVDDQNDDQED---- 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEE+PLA  SE   YD+GN+K+TVTTSEVSRE EID I+KPQTA  QL  KDKKHNLPI 
Sbjct: 121 EEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKK FKKV+KQRSRPK +SKRDKKKGRKKK
Sbjct: 181 KKKLFKKVAKQRSRPKLRSKRDKKKGRKKK 194

[Close]

BLAST of ClCG04G003630 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 3.1e-70
Identity = 157/210 (74.76%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK+EK+LVL+GGVLPADRPVDEQN+D +D D++
Sbjct: 61  QEEAKRRKRIEERK------------KRKIEKELVLHGGVLPADRPVDEQNDDLKDGDED 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKPLA +SETT YDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LP+ 
Sbjct: 121 EEEKPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV++++SR K +SK DKKKGRKKK
Sbjct: 181 KKKPFKKVARKKSRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of ClCG04G003630 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.6e-72
Identity = 165/210 (78.57%), Postives = 179/210 (85.24%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK EK+LVLYGG+LPADRPVDEQN+DHE    E
Sbjct: 61  QEEAKRRKRIELRK------------KRKEEKELVLYGGILPADRPVDEQNDDHE----E 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKP A +SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATTQL AKDKKHNLPI 
Sbjct: 121 EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV+KQ+SRPKP+SKRDKKKGRKKK
Sbjct: 181 KKKPFKKVAKQKSRPKPRSKRDKKKGRKKK 194

[Close]

BLAST of ClCG04G003630 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 8.0e-72
Identity = 160/210 (76.19%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK+EKDLVL+GGVLPADRPVDEQN+D +D D++
Sbjct: 61  QEEAKRRKRIEERK------------KRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDED 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKPLA +SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+QL AKDKKH+LPI 
Sbjct: 121 EEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV++++SR K +SK DKKKGRKKK
Sbjct: 181 KKKPFKKVARKKSRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of ClCG04G003630 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.8e-71
Identity = 165/210 (78.57%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           +EEAMRR RIEARK            KRKLEKDLVLYGGVLPADR VD+QN+D ED    
Sbjct: 61  KEEAMRRMRIEARK------------KRKLEKDLVLYGGVLPADRAVDDQNDDQED---- 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEE+PLA  SE   YD+GN+K+TVTTSEVSRE EID I+KPQTA  QL  KDKKHNLPI 
Sbjct: 121 EEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKK FKKV+KQRSRPK +SKRDKKKGRKKK
Sbjct: 181 KKKLFKKVAKQRSRPKLRSKRDKKKGRKKK 194

[Close]

BLAST of ClCG04G003630 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70
Identity = 165/212 (77.83%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNDGEEGGE+AQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           +EEAMRR RIEARK            KRKLEKDLVL+GGVLPADR VD+QN    D+   
Sbjct: 61  KEEAMRRMRIEARK------------KRKLEKDLVLHGGVLPADRAVDDQN----DDQGN 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTA--TTQLFAKDKKHNLP 180
           EEE+PLA LSE T YD+GN+K+TVTTSEVSRE+EID I+KPQTA  T QL  KDKKHNLP
Sbjct: 121 EEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLP 180

Query: 181 IAKKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           I KKK FKKV+KQR RPK +SKRDKKKGRKKK
Sbjct: 181 ITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of ClCG04G003630 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69
Identity = 156/210 (74.29%), Postives = 180/210 (85.71%), Query Frame = 0


Query: 1   MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+  EGG + QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAMRRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDEDDE 120
           QEEA RRKRIE RK            KRK+EKDLVL+GGVLPADRPVDEQN+D +D D++
Sbjct: 61  QEEAKRRKRIEERK------------KRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDED 120

Query: 121 EEEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIA 180
           EEEKPLA +SETT YDSGNIK+TVTTSEV REEEID I+KPQ +T+QL AKDKKH+LPI 
Sbjct: 121 EEEKPLAPISETTTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPIT 180

Query: 181 KKKPFKKVSKQRSRPKPQSKRDKKKGRKKK 211
           KKKPFKKV++++SR K +SK DKKKGRKKK
Sbjct: 181 KKKPFKKVARKKSRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of ClCG04G003630 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 142.1 bits (357), Expect = 5.0e-34
Identity = 110/207 (53.14%), Postives = 137/207 (66.18%), Query Frame = 0


Query: 7   EEGGEIAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAM 66
           EE G +A P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 67  RRKRIEARKKCTEKAIRALRLKRKLEKDLVLYGGVLPADRPVDEQNEDHEDED----DEE 126
           RRKRIEARK             RKLE+ +V   G         E NED E ED    ++E
Sbjct: 68  RRKRIEARK------------NRKLEELMVAGNG---------EDNEDGEAEDEVDAEDE 127

Query: 127 EEKPLARLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDK---KHNLP 186
           E +P A  S TTMYD+G +K+TVTTSE+SREEE + I K +T +T+  +  K   K  +P
Sbjct: 128 EAEPDASTSATTMYDTGELKVTVTTSEISREEE-EPIRKEKTQSTESGSTAKASTKQPVP 187

Query: 187 IAKKKPFKKVSKQRSRPKPQSKRDKKK 206
           + K KP K+ S++RS  K   KRDKKK
Sbjct: 188 VRKTKPMKQ-SRRRSTTKTMKKRDKKK 191

The following BLAST results are available for this feature:

BLAST of ClCG04G003630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881021.1	3.1e-78	80.95	nucleolar protein 12 [Benincasa hispida]	[more]
XP_022142095.1	3.3e-72	78.57	ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 r...	[more]
XP_022926799.1	1.7e-71	76.19	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
XP_008455785.1	3.7e-71	78.57	PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]	[more]
XP_023517913.1	3.1e-70	74.76	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG04G003630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G003630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL67	1.6e-72	78.57	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1EG67	8.0e-72	76.19	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A1S3C1A3	1.8e-71	78.57	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]
A0A0A0KYB4	5.7e-70	77.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1	[more]
A0A6J1KRQ7	1.3e-69	74.29	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]

BLAST of ClCG04G003630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	5.0e-34	53.14	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..210
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 22..145 e-value: 3.6E-14 score: 53.4
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 11..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G003630.1	ClCG04G003630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding