ClCG04G003470 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G003470
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
LocationCG_Chr04: 13360585 .. 13366452 (-)
RNA-Seq ExpressionClCG04G003470
SyntenyClCG04G003470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCATGTTTTCTGGAGTGCCTCTATTTACTTTGTCGGGTAGGAAAGGTAATTGCGCCACTTTTGAATGTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAATAGAATTCTCAAACTACCGCATGATTCTCTATTTAAACTCTATTTTTCTAAGCGACGTACAATAATAACTTGTATTTCTACGAGTTATCAACTCGCCCCCTGGGCGTCCAGAACATGTCAAAATAACCTCAAATGATTCCTCCTTCCGCCACAGCCCAAGCCACATTGCACGCATGGCCACTCCAAAACTCACCCAACAGCCTTAATCACACTACTCTTAGTTCTAGCGTCCAAAGTAATATTTCTGGCAACAACTAGAGTTTTCTTTCTCTTACAAAGTTGTAGATAAATGTCTTGGCTAGCTTACCTCAAAATTTTTGCTTCTAATTCTTTCTCTATTACCAGATATCTTCAAATCTTCTCAATCTGCTCCGATTTACTTGATAGCCGAAGCAAGTTTGAGTTTTTGATGAAATCCAAGTTCTTCCTCACGAAGTTTCCTTCTGGCAGCCCTCTTGGTGAAACTAGACTCAATTTAGGATAATTTGGTCGAAGAAAATTACATTTCGCCCAAGTGGTTTGCCCACACCAACCTCTTCTCCCGAACCCTTATTTATACTTTCCATAAATGTGCATGCAAACTCCTAGCCCGACACCTCATGCTTGCATGCATGCCCATGCCACACTTAGCCTCAATTTGACACCTAAGCTGGCTTGTTTATCACTTAAGCATAGGCTTTCCTTACCCAAGAACGAATGGTGGACGCATCCATGTGCAAGGCCTCCTCCACGCATCCTTTTGAGGTTAGTTGGCTACTTTTCTCACCTTTGCACGCAGCCTCTCTGGCCGGGTTAGCTTGAATGCATAGCATGGGGGCATAGCACCATGTGCCAGCCACATAGACCCTCTTGGACGCATAGCTCCTCAACGCATCATCCTCACTTACCTCAACTGTCACACTCCCTCCCAGGTACCCTCCTAACCCAGGAGAGCGTGTGATGACAACAGACACCGACCCTCACACGATATCCACTGCCAACTCTAACACATAACCATCAGCTGATAAACAGTTACACAATAATTAAACAACATAAATAAAACCAGGGTTAAGTTATCACAACAGCCATGCTTCCTCAAGATTACACAATAACATTGTTTCTAAACAACATCCTTAACCCTCTCTATGTACAACACTTATATAAGTTCAAATATTTACAAGTTTCAACAACACAGACACTGAAAACGGGCCCAGATGAGAATCTTGTGTAGGCTAAGCACCCTGGCACGCTCGCTACCTGAAAAACAGAGAAATAAGGAAAACATGAGCTAAATTGCCCAGTGAGTGACTAATTTTAAGTTTTCCTTAAACAACGAATGCAAAACATAGATTCCAGCCATAACTAACAAATTAATGTGTGTAAACTAGTTTATTTAAAACTTTTCCTTAGTTGGGGCGGAGCTAAGCTCAACACTACTCAACGTCGAATTAACCTTTGTTGGGCCGTCACCCGAGTACCTTCTCTAAGTCCTTCAGTACAGGGCCCCTTAACAAATTCCCGGCTACTCTCATGCCTTCTCCGAGTCCTTCAGCATGGGGCCATTTCCATACATAATTTACCCATATGCCTTCTTCAAGTCCTTCAGCATTGGGGTCATTTCCATACATAAGTTCCCCTTATGCTTTCTCCGAGTCCTTCGACATTGGGAGTCATTTAAACAAAGTTATAACATAACATAAATTCATGAGTTTAAGACATTCTATTCATCACAACACTATTCGCATGCTTAAATGCTTTCCTTGATCATAAATTGCATGCTTTACTCAAACTCATAGCAAAGCCAGTGTATATTTCAGATACATCTCATTATATAGCACATGACATTCACGTAAAGCTCATGAGATGTATTATATGAACAAGTTTCCATACATCTTTTTTAACGAGAAACTATGCTTAAAATAAACACTTTTAGAATCGAATGTCACTCACAACTTGTCCTAGGTCTTGAGCGGATTATACACCTTCCCTAGCTCTTCTTGGCCTGTAATAACACATTTCTCGTGTTAGACTTCCCTAAAGTTCCCTTTTACAAACCATTAAATTTACACATTTATACTTATTTAATGATTCACCACCGAGACTAATCTTCATCCAAATAATCATTATTAAGCAAGATTTCACACAACTAGCGAGACTACTAACGAGACTGAATTACGGGTAAACTGTACTAGCGATACCATGATGAGCGAGACCAGCGAGACTCACCTGAGTAGCAATACTTAGCAATACCCAGTGAGAATTGTGAGATGCAAAGCCTCCAGCGTTACCAATGACACCCGTTCTCGCTATTCACGCTTAAATTTTTAGTGTCGCTGCGGTTCTAGCGACACCCAACTACCTTAGTTTCTGCCTTTCCTTTTATTCTCACTTCTATCTATAAGAATCACATTTCCAGCCAAATTTAGAACTTCTTTCCTTCTACAAACTTATAAAAGAATAGGTTTTCTAGCTTACCTCAAGATTTCAGAGCTTAACTCCTCTTCCTTCGATAGATATCCCCAATTGACTTTGAGTTGCTCCAAAATTGCTCAGTAAATCCGTGACAGTCACTTCCATCTAAAATTTTACATATTTCTCTTCTCATTCAGCTTAAACATCCTTCATAGGAGTTGTTAAGAATTGAGTTAACTTACTAACCTTAAAATTTTAGCCCTAAATTCGATCTCTTCAGCTCACTTTTCTCCAAACACCAAACCACGCTCAGATTACGCGACAGCAATCAAACCTTCTGTTCTAGCTTCAATTTCTCCATGAACCGATCAGAATTCTACTCAAATTTGCTCTAAACACCTTCTTCTACCTCTCTTTGTCACTCAGCTGTGAAATGAAGTTGGTTGGAGCTTTTGAATATGCTTAAAAATGATCGGAAACTCATCTTTACTATTTAAATGAACTACCGACTTATTTCCACTTTCTCCCTTATTTTAATCAACTTAATTTTCCACTTAACAAAGTAACGTAACGTCCTTTAGCATGCTTGGTTGCTGGCTTGAATGCCTAACCAGCTTGGACGCATAACAACCTTGGATGCATTCCCCAAGCAAAGCTTCCTCCAACGCATGCTAAGCTAGCATCGGCCATCGCATGCTACATGCCCAGCAGCCTCACCAACACACTGCACCAGCCTCATTAATGCATAGCAGCCTCCAACGCATGGCTACCTCCAACGCCCACAGCAACAACATACCGCAACCTTCAACGCAAAAGCTCTCAGCCATCACTTTTCAATCATCCAACTTCTAGCTTGCCATCTTCCAAAGTTATGTGTGGGGCTTACATCAACCAACACGAAGCTTGTTGCACGCCTTGCCTACTTGCCCACATACGCACACTTGGGGCTCAGCTACCCAACATCGCCAACCTACCCCACCTTCTTGCTGGCCACACACACCACCCATGCCAAAGGCTTTCAGCCACCTACCTCTCAACTACTCGCCAAGCCACTTGCTAGTCAGCTTCCAAAGATGAAAGTAGGGCTTGCATTGAAGCTACTAACACACTTCCATTTAGCTCCAAACCTAGCCAAGACATAGTGAAAAGTAACCCTTGAGGATTTGGATTTAACAACCTCATTGACGAACAAAACCTTTAGATCTCAAACTCAAACACCCCAAATCAAGATGATCTCAACCCCTAACAATGGCTAGATGACAGATTACTTAGACGATCAACAAAACCACGGATCAGACAAAGCTTACAGCTCCCGTCGAACCTTGATCTTCGAATCAATCCACCAGCAAGATCGATCATGTCAAGCTTGATCGATTCTGAAGATGCACTCTAAATGCCATAGAATTGCAAAAGAACATAGCACAAGGCTAAAAGAAAGCTCAAAGGCTCTTTTTACTATATTTTCCAAATCACTTCCCAGTCTCTTTGTTTGAACAATTACATGACATTATATAGGCCTCAAAATATAGCTCTAGATTTTTTATGAGGCATTCAAAGAGTTGTAACACTCATAATTAATTACTATTATAAGCCATGATCTAATTGTAACATAAAAATACATCCTCAGAACTGAAAAATACATTTAATAAATACAATAAATCCGAGATTATATTTTCTTATTCATATTCCATGCATTTGTAAGCATCTAAGAGTAAATGACATCCCATTTGAAGAAGCTTGAAGTCTTTGTTCATTAAATGAAGCTTGATTATTCATAAATTTCACTTGACTTCACATAATTGCAAGTTCTTCTCATTGTGAATATTGATAGCATATTTTGTGCATTCTTCGATGTGCTTGCTTTCTGAGGTTGGGGTGGAATCTTGGGCTCATCTGTTCTTTGAGTGCCCCTTTGGGTTTGCAGTGTGGTTTGATGTGTTGAGTCTTATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCAT

mRNA sequence

ATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCATGTTTTCTGGAGTGCCTCTATTTACTTTGTCGGTCTTATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCAT

Coding sequence (CDS)

ATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCATGTTTTCTGGAGTGCCTCTATTTACTTTGTCGGTCTTATGGGTTCGTCCTATCGGGTGACGGGGTGGGTTGTGGAGCTAGAGTGGGTTTGTAGGATGGGGTGTGGTAGTGGGGCTAGGAGGAAATTATGGCAT

Protein sequence

MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFVGLMGSSYRVTGWVVELEWVCRMGCGSGARRKLWH
Homology
[Close]
BLAST of ClCG04G003470 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 1   MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
           M SS+R+  W VEL W+C  G G G RRKLWH+ W A+IYF+
Sbjct: 895 MSSSHRIGYWGVELSWICNQGIGKGVRRKLWHLLWCATIYFI 936

[Close]
BLAST of ClCG04G003470 vs. NCBI nr
Match: TYK26641.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1   MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
           M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 655 MASSHRIGHWGVELSWICHRGIGKGVRRKLWRVLWCATIYFI 696

[Close]
BLAST of ClCG04G003470 vs. NCBI nr
Match: TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1403 MASSHRIGHWGVELSWICHQGIGKGVRRKLWRVLWWATIYFI 1444

[Close]
BLAST of ClCG04G003470 vs. NCBI nr
Match: KAA0046247.1 (uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1404 MASSHRIGHWGVELSWICHQGIGKGVRRKLWRVLWWATIYFI 1445

[Close]
BLAST of ClCG04G003470 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1044 MESSHRIGHWGVELSWICHRGIGKGVRRKLWRVLWCATIYFI 1085

[Close]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match: A0A5D3DSA8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002870 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1   MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
           M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 655 MASSHRIGHWGVELSWICHRGIGKGVRRKLWRVLWCATIYFI 696

[Close]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.5e-07
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1404 MASSHRIGHWGVELSWICHQGIGKGVRRKLWRVLWWATIYFI 1445

[Close]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match: A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.5e-07
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1403 MASSHRIGHWGVELSWICHQGIGKGVRRKLWRVLWWATIYFI 1444

[Close]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match: A0A5A7SK23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1  MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
          M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 34 MASSHRIGHWGVELSWICHQGIGKGVRRKLWCVLWCATIYFI 75

[Close]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1    MGSSYRVTGWVVELEWVCRMGCGSGARRKLWHVFWSASIYFV 43
            M SS+R+  W VEL W+C  G G G RRKLW V W A+IYF+
Sbjct: 1044 MESSHRIGHWGVELSWICHRGIGKGVRRKLWRVLWCATIYFI 1085

The following BLAST results are available for this feature:
BLAST of ClCG04G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737043.13.9e-0757.14uncharacterized protein LOC116402131 [Cucumis sativus][more]
TYK26641.11.5e-0657.14putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa][more]
TYK18951.12.0e-0657.14uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa][more]
KAA0046247.12.0e-0657.14uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa][more]
KAA0046851.12.6e-0657.14uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa][more]
BLAST of ClCG04G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSA87.3e-0757.14Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ... [more]
A0A5A7TWG59.5e-0757.14Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3D5X69.5e-0757.14Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7SK231.2e-0657.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TZS01.2e-0657.14Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of ClCG04G003470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003470.1ClCG04G003470.1mRNA