ClCG04G003350 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G003350
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 13019111 .. 13019808 (+)
RNA-Seq ExpressionClCG04G003350
SyntenyClCG04G003350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTCCTTCAGATGAGGGATGGATAAAAATTCATAATTTACCTATTGATCAGTTGTCTTTCGACACTTCCAAGCTTATAGGTGATCTTTGTAGTGGCTACGTTGAGACTTCAAGGAAGACCTTGGCTAGAATGAACTTGATGGAGGTGAATTTAAAGGTAAAAAAGAACAAGTATGGCTTTCTTCCAGCCATCATCCAGCTCCCCCTCACATCAACTTTATCTTTGAATGTTATTATAGATCATTTCTTTAACCAGAACTGTTCATAGGTTATGTTGCTGCCGTTCATGGTTTGATTCCTCAGGTTTCACCAACAACTTTTACACAGAAGAAGTTGCCGGAGATTAAACAACAATGGCTGGAGTTTGTTGGCTGTGCTGCCAACTCAGTTTGCCCGCTGGATAATAGCATGGTTTTAGTGAATATGGACAAAGACAGTACCCTCCCTACCTACTCTTGTCCTTTTCTATCAAACATCCCTGTCCCATCCACCAATTTATCAGCCCAAAAAGCAGCCTTATATCATGATATTATCCCTGATTTTCAGCTCACCAATGCTTCTGTCCAATTAACCATTAAATCCCACCTATCAGCTTCCATCATCACCTACTTTCCACCCATACAGCCTCCATCTTCTGGTGAAATTTCCTATCCATCTCCCTTTCTCCCACCCATACAGCCCCTCTTCAGCTGA

mRNA sequence

ATGAAGCTTCCTTCAGATGAGGGATGGATAAAAATTCATAATTTACCTATTGATCAGTTGTCTTTCGACACTTCCAAGCTTATAGGTGATCTTTGTAGTGGCTACGTTGAGACTTCAAGGAAGACCTTGGCTAGAATGAACTTGATGGAGGTGAATTTAAAGGTTTCACCAACAACTTTTACACAGAAGAAGTTGCCGGAGATTAAACAACAATGGCTGGAGTTTGTTGGCTGTGCTGCCAACTCAGTTTGCCCGCTGGATAATAGCATGGTTTTAGTGAATATGGACAAAGACAGTACCCTCCCTACCTACTCTTGTCCTTTTCTATCAAACATCCCTGTCCCATCCACCAATTTATCAGCCCAAAAAGCAGCCTTATATCATGATATTATCCCTGATTTTCAGCTCACCAATGCTTCTGTCCAATTAACCATTAAATCCCACCTATCAGCTTCCATCATCACCTACTTTCCACCCATACAGCCTCCATCTTCTGGTGAAATTTCCTATCCATCTCCCTTTCTCCCACCCATACAGCCCCTCTTCAGCTGA

Coding sequence (CDS)

ATGAAGCTTCCTTCAGATGAGGGATGGATAAAAATTCATAATTTACCTATTGATCAGTTGTCTTTCGACACTTCCAAGCTTATAGGTGATCTTTGTAGTGGCTACGTTGAGACTTCAAGGAAGACCTTGGCTAGAATGAACTTGATGGAGGTGAATTTAAAGGTTTCACCAACAACTTTTACACAGAAGAAGTTGCCGGAGATTAAACAACAATGGCTGGAGTTTGTTGGCTGTGCTGCCAACTCAGTTTGCCCGCTGGATAATAGCATGGTTTTAGTGAATATGGACAAAGACAGTACCCTCCCTACCTACTCTTGTCCTTTTCTATCAAACATCCCTGTCCCATCCACCAATTTATCAGCCCAAAAAGCAGCCTTATATCATGATATTATCCCTGATTTTCAGCTCACCAATGCTTCTGTCCAATTAACCATTAAATCCCACCTATCAGCTTCCATCATCACCTACTTTCCACCCATACAGCCTCCATCTTCTGGTGAAATTTCCTATCCATCTCCCTTTCTCCCACCCATACAGCCCCTCTTCAGCTGA

Protein sequence

MKLPSDEGWIKIHNLPIDQLSFDTSKLIGDLCSGYVETSRKTLARMNLMEVNLKVSPTTFTQKKLPEIKQQWLEFVGCAANSVCPLDNSMVLVNMDKDSTLPTYSCPFLSNIPVPSTNLSAQKAALYHDIIPDFQLTNASVQLTIKSHLSASIITYFPPIQPPSSGEISYPSPFLPPIQPLFS
Homology
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BLAST of ClCG04G003350 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-11
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 2   KLPSDEGWIKIHNLPIDQLSFDTSKLIGDLCSGYVETSRKTLARMNLMEVNLKV 56
           ++PS   WIKI NL IDQ S+DT KLIG+LC GY+ETS+KTLARM++ME +LKV
Sbjct: 239 QVPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKV 292

The following BLAST results are available for this feature:
BLAST of ClCG04G003350 vs. NCBI nr
Match NameE-valueIdentityDescription
QWT43305.16.4e-1166.67kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris][more]
BLAST of ClCG04G003350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G003350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G003350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003350.1ClCG04G003350.1mRNA