ClCG04G003220 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G003220
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	AA_kinase domain-containing protein
Location	CG_Chr04: 11802598 .. 11802947 (+)
RNA-Seq Expression	ClCG04G003220
Synteny	ClCG04G003220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTGATGCGCTTAACAGATGTCACTAACAAGAGAGCCCTGTTACTCTATGCCTTGTGCATTGGTCTCTCAGTTGATGTCGGGCAGGTCATACGTGCATCGATCTGACAGATTTCTAAAGGGTCAACCACTGGTGGTCTTGGACACCCATCCTTGATCATCGAGCTCCGTAGAAGGACTGGGGTTGAAATAGGTCGAAGGGAGGAGAGAGTAGGCCCTAAGTCAACCCTTGATAGGACTTTTGTTGCCACCTTCTAAGGTCACCTAGACCAAGGGCGGCGCATGAGGATGACGTAGGCGATGGTTCGCATGGGGACCATGAGGCGACAATCATAGATGAGCACTAG

mRNA sequence

ATGCCTGTGATGCGCTTAACAGATGTCACTAACAAGAGAGCCCTGTTACTCTATGCCTTGTGCATTGGTCTCTCAGTTGATGTCGGGCAGATTTCTAAAGGGTCAACCACTGGTGGTCTTGGACACCCATCCTTGATCATCGAGCTCCGTAGAAGGACTGGGGTTGAAATAGGTCGAAGGGAGGAGAGAGTAGGCCCTAAGTCACCTAGACCAAGGGCGGCGCATGAGGATGACGTAGGCGATGGTTCGCATGGGGACCATGAGGCGACAATCATAGATGAGCACTAG

Coding sequence (CDS)

ATGCCTGTGATGCGCTTAACAGATGTCACTAACAAGAGAGCCCTGTTACTCTATGCCTTGTGCATTGGTCTCTCAGTTGATGTCGGGCAGATTTCTAAAGGGTCAACCACTGGTGGTCTTGGACACCCATCCTTGATCATCGAGCTCCGTAGAAGGACTGGGGTTGAAATAGGTCGAAGGGAGGAGAGAGTAGGCCCTAAGTCACCTAGACCAAGGGCGGCGCATGAGGATGACGTAGGCGATGGTTCGCATGGGGACCATGAGGCGACAATCATAGATGAGCACTAG

Protein sequence

MPVMRLTDVTNKRALLLYALCIGLSVDVGQISKGSTTGGLGHPSLIIELRRRTGVEIGRREERVGPKSPRPRAAHEDDVGDGSHGDHEATIIDEH

Homology

[Close]

BLAST of ClCG04G003220 vs. NCBI nr
Match: KAA0047231.1 (uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQI--------SKGSTTGGLGHPSLIIELRRR 60
           M V R +DVTN RALLL+ L  GLS+DV +I         +  TT GL HPSLI EL R+
Sbjct: 1   MSVTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQ 60

Query: 61  TGVEIGRREERV---------------GPKSPRPRAAHEDDVGDGSH 85
            GVE G  +E +               G   P P   H + +GD  H
Sbjct: 61  AGVEFGIDKEMIFSRAFLNRSFVSAFQGHVKPEP---HRELIGDNVH 104

[Close]

BLAST of ClCG04G003220 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 239 EGVVWNEKEELVDPK 253

[Close]

BLAST of ClCG04G003220 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 177 EGVVWNEKEELVDPK 191

[Close]

BLAST of ClCG04G003220 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 239 EGVVWNEKEELVDPK 253

[Close]

BLAST of ClCG04G003220 vs. NCBI nr
Match: TYK21755.1 (uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-04
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MPVMRLTDVTNKRALLLYALCIGLSVDVGQI--------SKGSTTGGLGHPSLIIELRRR 60
          M V + ++VTN RALLL+ L  GLS+DV +I         +  TT GL HPSLI EL R+
Sbjct: 1  MSVTQFSNVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELCRQ 60

Query: 61 TGVEIGRREERV 65
           GVE G  +E +
Sbjct: 61 AGVEFGIDKEMI 72

[Close]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL
Match: A0A5A7U0V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00220 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQI--------SKGSTTGGLGHPSLIIELRRR 60
           M V R +DVTN RALLL+ L  GLS+DV +I         +  TT GL HPSLI EL R+
Sbjct: 1   MSVTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQ 60

Query: 61  TGVEIGRREERV---------------GPKSPRPRAAHEDDVGDGSH 85
            GVE G  +E +               G   P P   H + +GD  H
Sbjct: 61  AGVEFGIDKEMIFSRAFLNRSFVSAFQGHVKPEP---HRELIGDNVH 104

[Close]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 239 EGVVWNEKEELVDPK 253

[Close]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL
Match: A0A0A0KER1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 239 EGVVWNEKEELVDPK 253

[Close]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL
Match: A0A1S3C7Y0 (uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +PV   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 177 EGVVWNEKEELVDPK 191

[Close]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL
Match: A0A0A0KNI1 (AA_kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G468460 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.5e-05
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   MPVMRLTDVTNKRALLLYALCIGLSVDVGQ--------ISKGSTTGGLGHPSLIIELRRR 60
           +P+   + VT +RA+LLYA+    SVDVG+        I K   TGGLGH SLI  L R 
Sbjct: 150 LPMAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 209

Query: 61  TGVEIGRREERVGPK 68
            GV    +EE V PK
Sbjct: 210 EGVVWNEKEELVDPK 224

The following BLAST results are available for this feature:

BLAST of ClCG04G003220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047231.1	4.6e-05	40.19	uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa]	[more]
KAA0033353.1	6.0e-05	46.67	putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]...	[more]
XP_008458668.1	6.0e-05	46.67	PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo]	[more]
KGN46897.1	6.0e-05	46.67	hypothetical protein Csa_020731 [Cucumis sativus]	[more]
TYK21755.1	3.0e-04	47.22	uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG04G003220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G003220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0V9	2.2e-05	40.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BBY3	2.9e-05	46.67	Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw...	[more]
A0A0A0KER1	2.9e-05	46.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1	[more]
A0A1S3C7Y0	2.9e-05	46.67	uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=...	[more]
A0A0A0KNI1	6.5e-05	45.33	AA_kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G468460 P...	[more]

BLAST of ClCG04G003220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G003220.1	ClCG04G003220.1	mRNA