ClCG04G003070 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G003070
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionS-locus lectin protein kinase family protein, putative
LocationCG_Chr04: 11332178 .. 11332788 (-)
RNA-Seq ExpressionClCG04G003070
SyntenyClCG04G003070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTACGTCAACGTGAAGAGGTCGTTGTTCCCGTCGTGAGGGAATTTTACGTGAACATTGTTGAAGGAAGGTCAACATCATGAGTTTGCGGGCACACGACATCCTTTGATTCTGCCACAATAAATCGCCTCTTCCACCTGCCTAATATCTATAGAGACAAATATGTGACTTATTTGCGGGGGCGGGTGGACATTGACGAGATTATCCAGACCCTCTTTGGGGACGGAGTAGGATGGGTGATAAGTGGAGGGTTCTAGTTAGGATTAATAGGACTTCCGTTAGCCAAGCTAACCAGGTTTGGCATGCATTTTTGTGTGCCAGGCTAATCCCTATCACCCATCTGTCTAATGTGACAAAGGATAGTGCTATTATGCTCTATGCCTTGGCCATGGGCTTCTCGATTGATGTTGGTAAAGTAATTTATTACTGGATCCAACATATTCATCGAGCCTCGACCATCGATGGTCTAGGACATCCGTCTTTGATCACCGAACTCTGTTAGTTAGCTGGGGTAGAGATTGGTCTCGAGGAGGAGAGGACACCAACCAAGGCTATCATTGCTAGGGCATCCTCGACCCCATGGCCACGTAAAGGCGGTGAACGTTGA

mRNA sequence

ATGTTTGTACGTCAACGTGAAGAGGTCGTTGTTCCCGTCGTGAGGGAATTTTACGTGAACATTGTTGAAGGAAGAGACAAATATGTGACTTATTTGCGGGGGCGGGTGGACATTGACGAGATTATCCAGACCCTCTTTGGGGACGGAGTAGGATGGGTGATAAGTGGAGGGACTTCCGTTAGCCAAGCTAACCAGGTTTGGCATGCATTTTTGTGTGCCAGGCTAATCCCTATCACCCATCTGTCTAATGTGACAAAGGATAGTGCTATTATGCTCTATGCCTTGGCCATGGGCTTCTCGATTGATGTTGGTAAAGTAATTTATTACTGGATCCAACATATTCATCGAGCCTCGACCATCGATGGTCTAGGACATCCGTCTTTGATCACCGAACTCTCTGGGGTAGAGATTGGTCTCGAGGAGGAGAGGACACCAACCAAGGCTATCATTGCTAGGGCATCCTCGACCCCATGGCCACGTAAAGGCGGTGAACGTTGA

Coding sequence (CDS)

ATGTTTGTACGTCAACGTGAAGAGGTCGTTGTTCCCGTCGTGAGGGAATTTTACGTGAACATTGTTGAAGGAAGAGACAAATATGTGACTTATTTGCGGGGGCGGGTGGACATTGACGAGATTATCCAGACCCTCTTTGGGGACGGAGTAGGATGGGTGATAAGTGGAGGGACTTCCGTTAGCCAAGCTAACCAGGTTTGGCATGCATTTTTGTGTGCCAGGCTAATCCCTATCACCCATCTGTCTAATGTGACAAAGGATAGTGCTATTATGCTCTATGCCTTGGCCATGGGCTTCTCGATTGATGTTGGTAAAGTAATTTATTACTGGATCCAACATATTCATCGAGCCTCGACCATCGATGGTCTAGGACATCCGTCTTTGATCACCGAACTCTCTGGGGTAGAGATTGGTCTCGAGGAGGAGAGGACACCAACCAAGGCTATCATTGCTAGGGCATCCTCGACCCCATGGCCACGTAAAGGCGGTGAACGTTGA

Protein sequence

MFVRQREEVVVPVVREFYVNIVEGRDKYVTYLRGRVDIDEIIQTLFGDGVGWVISGGTSVSQANQVWHAFLCARLIPITHLSNVTKDSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITELSGVEIGLEEERTPTKAIIARASSTPWPRKGGER
Homology
[Close]
BLAST of ClCG04G003070 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 72/187 (38.50%), Postives = 102/187 (54.55%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  VV +VREFY N+VEG                            RD+Y  Y  
Sbjct: 70  FVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYAS 129

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  W+I+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 130 EHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 189

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 151
           + AI+LYA+A   S+DVGKVI+  + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 190 ERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 249

[Close]
BLAST of ClCG04G003070 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 72/187 (38.50%), Postives = 102/187 (54.55%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  VV +VREFY N+VEG                            RD+Y  Y  
Sbjct: 8   FVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYAS 67

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  W+I+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 68  EHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 127

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 151
           + AI+LYA+A   S+DVGKVI+  + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 128 ERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 187

[Close]
BLAST of ClCG04G003070 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 72/190 (37.89%), Postives = 103/190 (54.21%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  V+ +VREFY N+VEG                            RD+Y  Y  
Sbjct: 70  FVKQPEPAVLSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYDIYAS 129

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  WVI+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 130 EHVDVHQIIRELCQPGAEWVINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 189

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 154
           + AI+LYA+A   S+DVGKVI   + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 190 ERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 249

[Close]
BLAST of ClCG04G003070 vs. NCBI nr
Match: EOY01634.1 (Uncharacterized protein TCM_011481 [Theobroma cacao])

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-14
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 0 

Query: 16  EFYVNIVEGRDKYVTYLRGRVDIDEIIQTLFGDGVGWVISGGTSVS-QAN------QVWH 75
           EFY N++E  + +  YL      D +I  L G G  W +S G  VS +AN      +VW+
Sbjct: 47  EFYANVLEHENGFTFYL------DGVITFLCGPGTQWKVSKGIPVSFKANALNKFFKVWY 106

Query: 76  AFLCARLIPITHLSNVTKDSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSL 133
            FL ARL+P+ H+S +TKD A++LYA+  G +I+VGK+I+  I H+   S  +G+ +PSL
Sbjct: 107 HFLTARLLPVKHVSVITKDRAVLLYAMVTGKTINVGKLIFENILHV-AGSAKEGIWYPSL 163

[Close]
BLAST of ClCG04G003070 vs. NCBI nr
Match: EOY08849.1 (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEGRDKYVTYLRG---RVDIDEIIQTLFGDGVGWVISGGT 61
           F  Q +  VVPVVREFY N+VE  D  V ++RG   +   DE +   F   V        
Sbjct: 65  FCHQPDATVVPVVREFYANVVEHVDG-VAFVRGAQWKTSHDEPVS--FKRSV-------- 124

Query: 62  SVSQANQVWHAFLCARLIPITHLSNVTKDSAIMLYALAMGFSIDVGKVIYYWIQHIHRAS 121
            + +  QVW  F+ ARL+  TH+S+VTKD A+++YA+    SIDVGKVI + I H  R  
Sbjct: 125 -MKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSIDVGKVISHAILHTGRTK 184

Query: 122 TIDGLGHPSLITEL 133
             DG+G PSLIT L
Sbjct: 185 R-DGIGFPSLITAL 185

[Close]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.4e-24
Identity = 72/187 (38.50%), Postives = 102/187 (54.55%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  VV +VREFY N+VEG                            RD+Y  Y  
Sbjct: 70  FVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYAS 129

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  W+I+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 130 EHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 189

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 151
           + AI+LYA+A   S+DVGKVI+  + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 190 ERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 249

[Close]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match: A0A1S3C7Y0 (uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.4e-24
Identity = 72/187 (38.50%), Postives = 102/187 (54.55%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  VV +VREFY N+VEG                            RD+Y  Y  
Sbjct: 8   FVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYAS 67

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  W+I+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 68  EHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 127

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 151
           + AI+LYA+A   S+DVGKVI+  + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 128 ERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 187

[Close]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match: A0A0A0KER1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.4e-23
Identity = 72/190 (37.89%), Postives = 103/190 (54.21%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEG----------------------------RDKYVTYLR 61
           FV+Q E  V+ +VREFY N+VEG                            RD+Y  Y  
Sbjct: 70  FVKQPEPAVLSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYDIYAS 129

Query: 62  GRVDIDEIIQTLFGDGVGWVISGG-------TSVSQANQVWHAFLCARLIPITHLSNVTK 121
             VD+ +II+ L   G  WVI+ G       ++++ +NQVWH F+CA+L+P+ H S+VTK
Sbjct: 130 EHVDVHQIIRELCQPGAEWVINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTK 189

Query: 122 DSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSLITEL---SGVEIGLEEER 154
           + AI+LYA+A   S+DVGKVI   + +I ++    GLGH SLIT L    GV    +EE 
Sbjct: 190 ERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEEL 249

[Close]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match: A0A061EH53 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011481 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 0 

Query: 16  EFYVNIVEGRDKYVTYLRGRVDIDEIIQTLFGDGVGWVISGGTSVS-QAN------QVWH 75
           EFY N++E  + +  YL      D +I  L G G  W +S G  VS +AN      +VW+
Sbjct: 47  EFYANVLEHENGFTFYL------DGVITFLCGPGTQWKVSKGIPVSFKANALNKFFKVWY 106

Query: 76  AFLCARLIPITHLSNVTKDSAIMLYALAMGFSIDVGKVIYYWIQHIHRASTIDGLGHPSL 133
            FL ARL+P+ H+S +TKD A++LYA+  G +I+VGK+I+  I H+   S  +G+ +PSL
Sbjct: 107 HFLTARLLPVKHVSVITKDRAVLLYAMVTGKTINVGKLIFENILHV-AGSAKEGIWYPSL 163

[Close]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match: A0A061F2U9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.0e-14
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 2   FVRQREEVVVPVVREFYVNIVEGRDKYVTYLRG---RVDIDEIIQTLFGDGVGWVISGGT 61
           F  Q +  VVPVVREFY N+VE  D  V ++RG   +   DE +   F   V        
Sbjct: 65  FCHQPDATVVPVVREFYANVVEHVDG-VAFVRGAQWKTSHDEPVS--FKRSV-------- 124

Query: 62  SVSQANQVWHAFLCARLIPITHLSNVTKDSAIMLYALAMGFSIDVGKVIYYWIQHIHRAS 121
            + +  QVW  F+ ARL+  TH+S+VTKD A+++YA+    SIDVGKVI + I H  R  
Sbjct: 125 -MKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSIDVGKVISHAILHTGRTK 184

Query: 122 TIDGLGHPSLITEL 133
             DG+G PSLIT L
Sbjct: 185 R-DGIGFPSLITAL 185

The following BLAST results are available for this feature:
BLAST of ClCG04G003070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033353.11.3e-2338.50putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.11.3e-2338.50PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
KGN46897.11.1e-2237.89hypothetical protein Csa_020731 [Cucumis sativus][more]
EOY01634.13.2e-1441.94Uncharacterized protein TCM_011481 [Theobroma cacao][more]
EOY08849.11.2e-1344.03Uncharacterized protein TCM_024087 [Theobroma cacao][more]
BLAST of ClCG04G003070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BBY36.4e-2438.50Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw... [more]
A0A1S3C7Y06.4e-2438.50uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=... [more]
A0A0A0KER15.4e-2337.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1[more]
A0A061EH531.6e-1441.94Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011481 PE=4 SV=1[more]
A0A061F2U96.0e-1444.03Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024087 PE=4 SV=1[more]
BLAST of ClCG04G003070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003070.1ClCG04G003070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0016301 kinase activity