ClCG04G002080 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G002080
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 6972017 .. 6973329 (+)
RNA-Seq ExpressionClCG04G002080
SyntenyClCG04G002080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGATGTTGAGTGTCCTTCTACTGTTGAAAAATGTTGCTATTGATGTTAACCATATGTTTGCTCATACTAATCCTATCTTCTCTGATCGTCCTGATGTATCATTTTTTGGGGATGATGTCCCTAATTAGTCTCACTGCTCCTCTACTGATGATGATCATTCTATTTCTGTGGATGTGTCTGTGACTAGTTCTGACGATGACAATGTTCCGATTGCTTTTCTCGGCAAATCACGTGCTGCTAAATCATCCCAATTCGACCCTATGGTTGTTGGTCCTTCTACTCCTTTCCTCACCGTTGAAAAATTCCTCGCAATATTCCGGCAGTCCCTATTGATGAAATTTCTTTTCATACCGAGGAAAATGTCTTGCGTTTGAAGTATGTACTCCAATGTCGCATTGCTGAAGAGAAGGTTCTCTTAGAACAAACCACTGGGTGTTTAGAACTTATGGATTACATTCATCATGCTGGACTTTTGAAGACTATTGTAAATGTTGCTCCATACAACCCTTAATTGATTCGTGAGTTCATAGCAAATCTTCATAATGGTTTTAATGACCCGAGCAACCCTAATTATCAAAATGTTCATGTGCCGAGTGTGTGCTTTTTGGTCTCTCCTCCTCTTAGTGATGACCATCCTTCTACTAAGGCGCTTGTTATGGAACTAACTGGTGGCACCTAAAAAATTTGGCCTTCTTCTAACCAGTTACCCGATGCCACTCTCAGCATGAAGTATGTTATTCTTCATAAGATTGGCATTGCAAATTGGTGTCCCTCCACTCACACCTCTAGATTGTCTCCCACCTTGGTTAGTTTGCTGTATCAGATTGGCACTCGGTCTACCTTTGATTATGGCGTATTTTTTTTAATCAGTTGGTTCCTCATGTTGCTTTCTATGCTATCACACTTCCTATTGGTTTTCCTGGTTATTTAGTGGTATTCTCCTGGCTCAATCTCCTTCCATCCTCACCTCTGCTAATGCCTCTAGCCCTGCCTCTGCAGTTCTGAACCTCAGCTTTAAGTTTTTCAAGGGTCTCATGTTCTTGACATTGTCCACAACCTTCATCCCCAGCGCCCTGTTGATATGCCTTTGCTAGATGACCTCCATGTTCTTGACGAGGGCATTCATATTCCTGTTGAGCTTGGTACTCGAATTCTTCACATTTTGAAGACAGAATCTTATGCTCTGTGTTTGATGATCCGTGAGCTTTCTAATCGTCGTGCTGAGATTGATTCTCTGGTTCGTTTACTCAGCATTGCTTTGCCTAATTTTGAGGGTACTTCAACTTCTCAACCTCCGTCTGGTTTGGCT

mRNA sequence

ATGCCGATGTTGAGTGTCCTTCTACTGTTGAAAAATGTTGCTATTGATGTTAACCATATGTTTGCTCATACTAATCCTATCTTCTCTGATCGTCCTGATGTATCATTTTTTGGGGATGATTCTCACTGCTCCTCTACTGATGATGATCATTCTATTTCTGTGGATGTGTCTGTGACTAGTTCTGACGATGACAATGTTCCGATTGCTTTTCTCGGCAAATCACCAAATCTTCATAATGGTTTTAATGACCCGAGCAACCCTAATTATCAAAATGTTCATGTGCCGAGTGTGTGCTTTTTGGTCTCTCCTCCTCTTAGTGATGACCATCCTTCTACTAAGGCGCTTCGCCCTGTTGATATGCCTTTGCTAGATGACCTCCATGTTCTTGACGAGGGCATTCATATTCCTGTTGAGCTTGGTACTCGAATTCTTCACATTTTGAAGACAGAATCTTATGCTCTGTGTTTGATGATCCGTGAGCTTTCTAATCGTCGTGCTGAGATTGATTCTCTGGTTCGTTTACTCAGCATTGCTTTGCCTAATTTTGAGGGTACTTCAACTTCTCAACCTCCGTCTGGTTTGGCT

Coding sequence (CDS)

ATGCCGATGTTGAGTGTCCTTCTACTGTTGAAAAATGTTGCTATTGATGTTAACCATATGTTTGCTCATACTAATCCTATCTTCTCTGATCGTCCTGATGTATCATTTTTTGGGGATGATTCTCACTGCTCCTCTACTGATGATGATCATTCTATTTCTGTGGATGTGTCTGTGACTAGTTCTGACGATGACAATGTTCCGATTGCTTTTCTCGGCAAATCACCAAATCTTCATAATGGTTTTAATGACCCGAGCAACCCTAATTATCAAAATGTTCATGTGCCGAGTGTGTGCTTTTTGGTCTCTCCTCCTCTTAGTGATGACCATCCTTCTACTAAGGCGCTTCGCCCTGTTGATATGCCTTTGCTAGATGACCTCCATGTTCTTGACGAGGGCATTCATATTCCTGTTGAGCTTGGTACTCGAATTCTTCACATTTTGAAGACAGAATCTTATGCTCTGTGTTTGATGATCCGTGAGCTTTCTAATCGTCGTGCTGAGATTGATTCTCTGGTTCGTTTACTCAGCATTGCTTTGCCTAATTTTGAGGGTACTTCAACTTCTCAACCTCCGTCTGGTTTGGCT

Protein sequence

MPMLSVLLLLKNVAIDVNHMFAHTNPIFSDRPDVSFFGDDSHCSSTDDDHSISVDVSVTSSDDDNVPIAFLGKSPNLHNGFNDPSNPNYQNVHVPSVCFLVSPPLSDDHPSTKALRPVDMPLLDDLHVLDEGIHIPVELGTRILHILKTESYALCLMIRELSNRRAEIDSLVRLLSIALPNFEGTSTSQPPSGLA
Homology
[Close]
BLAST of ClCG04G002080 vs. NCBI nr
Match: KAA0040543.1 (uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK05585.1 uncharacterized protein E5676_scaffold98G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-06
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 89  YQNVHVPSVCFLVSPPLSDDHPSTKALRPVDMPLLDDLHVLDEGIHIPVELGTRILHILK 148
           +Q  HVP++   V PP  D           D PLL++L   D G+ IP+ L   I H+L 
Sbjct: 79  FQGSHVPNITHQVRPPPVD-----------DFPLLNELCTSDGGLLIPLSLWNIIFHVLT 138

Query: 149 TESYALCLMIRELSNRRAEIDSLVRLLSIALPNFEGTSTS 189
           TES +L  +I+EL   R  I+ LV   S+ LP F  TSTS
Sbjct: 139 TESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTS 167

[Close]
BLAST of ClCG04G002080 vs. ExPASy TrEMBL
Match: A0A5A7TBV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00290 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 89  YQNVHVPSVCFLVSPPLSDDHPSTKALRPVDMPLLDDLHVLDEGIHIPVELGTRILHILK 148
           +Q  HVP++   V PP  D           D PLL++L   D G+ IP+ L   I H+L 
Sbjct: 79  FQGSHVPNITHQVRPPPVD-----------DFPLLNELCTSDGGLLIPLSLWNIIFHVLT 138

Query: 149 TESYALCLMIRELSNRRAEIDSLVRLLSIALPNFEGTSTS 189
           TES +L  +I+EL   R  I+ LV   S+ LP F  TSTS
Sbjct: 139 TESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTS 167

[Close]
BLAST of ClCG04G002080 vs. ExPASy TrEMBL
Match: A0A5A7URQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 0 

Query: 89  YQNVHVPSVCFLVSPPLSDDHPSTKALRPVDMPLLDDLHVLDEGIHIPVELGTRILHILK 148
           +Q  HVP +         D HP T+  R  D    D+     EG ++  EL TRI++ L 
Sbjct: 467 FQGSHVPDID-------HDVHP-TRGPRIFDTTDWDE---SAEGFYVDRELATRIINSLT 526

Query: 149 TESYALCLMIRELSNRRAEIDSLVRLLSIALPNFEGTSTSQPPSG 194
           TES AL   I  LS RR E+D+L+R L  + P+   TS  QPPSG
Sbjct: 527 TESRALTNSITLLSERRLEVDALIRHLKSSAPS---TSRQQPPSG 557

[Close]
BLAST of ClCG04G002080 vs. ExPASy TrEMBL
Match: A0A1S3CMY0 (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 0 

Query: 89  YQNVHVPSVCFLVSPPLSDDHPSTKALRPVDMPLLDDLHVLDEGIHIPVELGTRILHILK 148
           +Q  HVP +         D HP T+  R  D    D+     EG ++  EL TRI++ L 
Sbjct: 446 FQGSHVPDID-------HDVHP-TRGPRIFDTTDWDE---SAEGFYVDRELATRIINSLT 505

Query: 149 TESYALCLMIRELSNRRAEIDSLVRLLSIALPNFEGTSTSQPPSG 194
           TES AL   I  LS RR E+D+L+R L  + P+   TS  QPPSG
Sbjct: 506 TESRALTNSITLLSERRLEVDALIRHLKSSAPS---TSRQQPPSG 536

The following BLAST results are available for this feature:
BLAST of ClCG04G002080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040543.12.9e-0640.00uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK0... [more]
BLAST of ClCG04G002080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G002080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBV11.4e-0640.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URQ65.1e-0440.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CMY05.1e-0440.00uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=... [more]
BLAST of ClCG04G002080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G002080.1ClCG04G002080.1mRNA