ClCG04G001970 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G001970
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionVacuolar fusion protein MON1 homolog
LocationCG_Chr04: 6831710 .. 6832019 (+)
RNA-Seq ExpressionClCG04G001970
SyntenyClCG04G001970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAACCAACTCTTGTTGGAGACAAGTCATTAACAATATTCATAGTTCTTGTCAGTTTGATTGGCACGCAAATTGTAGGGGTAATCTAAGTCTTAGAAGCCCGTGGAAGAGTATTTCTAGCTCTTGGAAGAAGGTGGATTCTCTTTTGACTCTTAAAGTTGGTAATGGGAGACGAACATCTATCTAGAAAGACCCTTTGGCTCAATGGGGTCCATTTGAAAGATAGATTTCCAAATTTATATGGTCTTGTTGCAGATTCAGATGCTGCAATTTTCTCCTATTGGGATACAATCACACTATCTTAG

mRNA sequence

ATGAATGAAACCAACTCTTGTTGGAGACAAGTCATTAACAATATTCATAGTTCTTGTCAGTTTGATTGGCACGCAAATTGTAGGGGTAATCTAAGTCTTAGAAGCCCGTGGAAGAGTATTTCTAGCTCTTGGAAGAAGTTGGTAATGGGAGACGAACATCTATCTAGAAAGACCCTTTGGCTCAATGGGGTCCATTTGAAAGATAGATTTCCAAATTTATATGGTCTTGTTGCAGATTCAGATGCTGCAATTTTCTCCTATTGGGATACAATCACACTATCTTAG

Coding sequence (CDS)

ATGAATGAAACCAACTCTTGTTGGAGACAAGTCATTAACAATATTCATAGTTCTTGTCAGTTTGATTGGCACGCAAATTGTAGGGGTAATCTAAGTCTTAGAAGCCCGTGGAAGAGTATTTCTAGCTCTTGGAAGAAGTTGGTAATGGGAGACGAACATCTATCTAGAAAGACCCTTTGGCTCAATGGGGTCCATTTGAAAGATAGATTTCCAAATTTATATGGTCTTGTTGCAGATTCAGATGCTGCAATTTTCTCCTATTGGGATACAATCACACTATCTTAG

Protein sequence

MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVMGDEHLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS
Homology
[Close]
BLAST of ClCG04G001970 vs. NCBI nr
Match: KAA0032570.1 (protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08
Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           ++E +S W +V+ +IH S  F WH + + + SLRSPW SIS   +K+ +        GD 
Sbjct: 235 LDEPSSLWCKVVRSIHDSDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDR 294

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
            L     W+N + L  +FP LY +      ++ +YWD+ + S
Sbjct: 295 ILFWLDPWMNSIALWIKFPRLYRIALPPKGSVTNYWDSSSSS 336

[Close]
BLAST of ClCG04G001970 vs. NCBI nr
Match: TYK22579.1 (hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           M E  + WRQVI +IH S  FDWH   +   SLRSPW SIS  WKK+ +        G  
Sbjct: 1   MKEDTAMWRQVIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRR 60

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
                  W   + LK +   L+ +      ++ ++WD+ T S
Sbjct: 61  VAFWADSWAREIPLKTQNSKLFKIALLPIGSVAAHWDSDTNS 102

[Close]
BLAST of ClCG04G001970 vs. NCBI nr
Match: TYK07163.1 (hypothetical protein E5676_scaffold606G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-05
Identity = 31/84 (36.90%), Postives = 41/84 (48.81%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKL------VMGDEHL 60
           M E  S WRQV+ NIH    FDWH   +   SL+ PW  IS +W+K+       +G+  L
Sbjct: 190 MEEEESLWRQVVRNIHGKELFDWHTVGKSRNSLKGPWICISRAWRKVEPLSNFKLGNGPL 249

Query: 61  SRKTL----WLNGVHLKDRFPNLY 75
           S  T     W     L+ RF  L+
Sbjct: 250 SNITFWNDTWAEDAPLRSRFQKLF 273

[Close]
BLAST of ClCG04G001970 vs. NCBI nr
Match: TYK28319.1 (uncharacterized protein E5676_scaffold600G001450 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 32/102 (31.37%), Postives = 47/102 (46.08%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           M+E    WR+V+ NIH    F WH + + N  LRS W SIS  W+K+          G  
Sbjct: 342 MSEQKVFWRKVVENIHGIHPFLWHTSGKENSCLRSSWISISREWRKIEALATFRIGNGSR 401

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
                  WL+ + L ++ P L  +      +I  +WD+ T S
Sbjct: 402 VYFWTDPWLDNIPLNNKSPRLSHIALLPKGSISKHWDSQTSS 443

[Close]
BLAST of ClCG04G001970 vs. NCBI nr
Match: KAA0057306.1 (uncharacterized protein E6C27_scaffold280G001490 [Cucumis melo var. makuwa] >TYK13430.1 uncharacterized protein E5676_scaffold496G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 1  MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKL 48
          +NE NS W QV+ +IH   +F WH     + SL SPW SIS SWK++
Sbjct: 28 INEENSLWVQVVKSIHGGSEFSWHTKGSVSCSLHSPWISISRSWKQV 74

[Close]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match: A0A5A7SP09 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00570 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           ++E +S W +V+ +IH S  F WH + + + SLRSPW SIS   +K+ +        GD 
Sbjct: 235 LDEPSSLWCKVVRSIHDSDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDR 294

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
            L     W+N + L  +FP LY +      ++ +YWD+ + S
Sbjct: 295 ILFWLDPWMNSIALWIKFPRLYRIALPPKGSVTNYWDSSSSS 336

[Close]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match: A0A5D3DH32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00340 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           M E  + WRQVI +IH S  FDWH   +   SLRSPW SIS  WKK+ +        G  
Sbjct: 1   MKEDTAMWRQVIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRR 60

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
                  W   + LK +   L+ +      ++ ++WD+ T S
Sbjct: 61  VAFWADSWAREIPLKTQNSKLFKIALLPIGSVAAHWDSDTNS 102

[Close]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match: A0A5D3C5E6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00380 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 31/84 (36.90%), Postives = 41/84 (48.81%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKL------VMGDEHL 60
           M E  S WRQV+ NIH    FDWH   +   SL+ PW  IS +W+K+       +G+  L
Sbjct: 190 MEEEESLWRQVVRNIHGKELFDWHTVGKSRNSLKGPWICISRAWRKVEPLSNFKLGNGPL 249

Query: 61  SRKTL----WLNGVHLKDRFPNLY 75
           S  T     W     L+ RF  L+
Sbjct: 250 SNITFWNDTWAEDAPLRSRFQKLF 273

[Close]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match: A0A5D3DY86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001450 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 32/102 (31.37%), Postives = 47/102 (46.08%), Query Frame = 0 

Query: 1   MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKLVM--------GDE 60
           M+E    WR+V+ NIH    F WH + + N  LRS W SIS  W+K+          G  
Sbjct: 342 MSEQKVFWRKVVENIHGIHPFLWHTSGKENSCLRSSWISISREWRKIEALATFRIGNGSR 401

Query: 61  HLSRKTLWLNGVHLKDRFPNLYGLVADSDAAIFSYWDTITLS 95
                  WL+ + L ++ P L  +      +I  +WD+ T S
Sbjct: 402 VYFWTDPWLDNIPLNNKSPRLSHIALLPKGSISKHWDSQTSS 443

[Close]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match: A0A5A7UT27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00500 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 1  MNETNSCWRQVINNIHSSCQFDWHANCRGNLSLRSPWKSISSSWKKL 48
          +NE NS W QV+ +IH   +F WH     + SL SPW SIS SWK++
Sbjct: 28 INEENSLWVQVVKSIHGGSEFSWHTKGSVSCSLHSPWISISRSWKQV 74

The following BLAST results are available for this feature:
BLAST of ClCG04G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032570.19.8e-0833.33protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo v... [more]
TYK22579.13.7e-0734.31hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa][more]
TYK07163.13.5e-0536.90hypothetical protein E5676_scaffold606G00380 [Cucumis melo var. makuwa][more]
TYK28319.14.6e-0531.37uncharacterized protein E5676_scaffold600G001450 [Cucumis melo var. makuwa][more]
KAA0057306.13.9e-0448.94uncharacterized protein E6C27_scaffold280G001490 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of ClCG04G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SP094.8e-0833.33Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DH321.8e-0734.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C5E61.7e-0536.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DY862.2e-0531.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UT271.9e-0448.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG04G001970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G001970.1ClCG04G001970.1mRNA