ClCG04G001780 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G001780
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 6321125 .. 6325517 (-)
RNA-Seq ExpressionClCG04G001780
SyntenyClCG04G001780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGGCGAGCATAGAGTAAAGATCGAGCAGAAGGATGAAGAGGAAGAGGAACGGAGGCAGACTAGTAGGAAGAGAAAGTCATCCCAACCGTACACCCCTCTAGTTGATACGGTCAAGGTGACGAGTAAGGGACGACGATACATTCAACCAGGGGAACGCCCCACTGATAGGTCGCCCGTCCCTTACGATCCAGCTCATCGAGTGCCTAATGACATCATGAATGAATTCATGAGTTGGCTAACGAGCGAGGATATAGGTCCTCATAAGTCGGGCACGGGAATACTCTTCAGGAGGAATTGCACAACAGAGCAGTTGTTCGAGGAGCTTACACAAGACAATGAATGGGTCAAGAACGATGTAAGTTATCTAACTTTCAATTTAGTTTATGATATCTAACTTTTGATCTTGTGTAAGTTTATTAATCGTGTAAATTGCAGGTTCTTGATTCCATATTTATGTTCCTTCGGTGAAAGTTCCTCATTCGACCGAAGAAGTGTGCACACCAGTTCACGACTTTGCCCTATGGCATATTGGTATGTATGCACACCTTAATTTTTTGTATTTTCTTTTCTTTGAACGTAACTCTTGAAGGACTGAAGTTTCATTATTTCGTAAAGTCATCTGAATCTACATGGGGAAGACAACTTGTTCCATGCCATACATCCCACAACAAAAGAACAAGTTGCGAAAGTATGGGAGAAGGAGGACAAATACATGGATTTTGTGGTGGGGTTGGAACTGGAACACCAACCGGGATGGTAGGAGGTTGACTTCGTCTACAACCCACTCAATTACAAACAACACTGGATAATGCTTGTGATAGACTTTGAACGTTGGCCGCATCCTCCTGTATGGCTCACTCTCGTCGTATATTTAATCAAGAGACCTGGTATAGTTCTTATCGCCCTTATGTTACACTCTTCCCTCCCTAGTAGAATTCTGCAATCTACATGCCTCGAAGCCGGATCTTCAACCCACTCCTTGGAAGTTGAGTCGTAACGATTATGGCAAACTATAAAGGAGCACATTAGATTGTGGGATCTTCTGCTTGAAGTTCTTTGAGTACTTAGTTACCAGGGTAGATAGGGAGAGCTTTCAGTAGAGTAGAATGTTAGAATTTCGGCTGCAGTACGGTGCCAAATAATGAGTCGATTAGTTTTTCTACTAGGTCCTTCCATGCACTTTTTGTATATATTATTTTATAATATATGAAGCTATTGTTTATGATCAATTGTGTTTGTGAAATAAGGGCGAGTGTCATGTATTGAGTATCGTGTATCGTGTATCGAGTATCAAGTAATGAGTGTTATGTATCTTGTATCGAGTAATCAAGTATTCTCTGTCTATCGAGTATTGAATACAGTCTATTAACCCTGATATCACTTCGAGTTATCGAGTATCAGGTAGTGCATAATACATTATGTTAACACTGATATAAGTTCATCTGATGTAGTTTCAACATCAAGTTATTGAGTATCAAGTAATCCAGTATTGAGTAGTCTAATTCAACACCGAGTAATCGAGTATCGAGTAATGCAATATTTTCATTGTCAAACCCCCTCCCATGTTACCCTTTTAAACCTGAGATGAGGCATGATGATAATAGACCTTACCCTCTTGTAATATCTACTGTCTCTTCCTAGCTTTTAACATACTTCATCTTGCATACTTTTAAAGAATACTTTTATTAACACATTCATATAAGTTTATACAATACCACAGCTTAAACACAACCCCGAGTTATTAACCCTAAACACAACAAGCTATGTTATGGCAGACCTTGACTTCACGCAGCAATGGGAACTTTCTACTATGTGAAAAGAAAACATAAAAGAAAAGGATGAGCTTACAAGCCTAATGAGTGGTTAAGCAAACAACTAGTGTAGGGTACACACGACCCTTCCACAATAACAAAATATAAACAAATTCATAATGATAACAATAGTCGTAACGGAGGTTATCTACTCAAACCTCAAACACGTAGCTTATCCCGGTACTGTATTTACTCTGCTAGCACCCTCTAGCTCAACAACTAAATCCATTCCCTATGTGCACATAGACTTACCTCTAAGGGATCATAAGCTAGACTCGTCGGTCCTCTAACCATCCCATAAGAGATACTTCCCATAGGATCAGAAACTAGGTTTTCGATACCCCCCTAACCATCCCGTGAGGTTTTAACCCCGATATAGGATCAGAAAATAGATCCCCAGATCCTTTAACCACCCCGTGCGACTTTAACTTCCTTATCATTTATTCACAAATGCATATACATAGCAAATATATCTTAAGGAAAAAAACTAGTAACCACTCACAGTTAGCTCTTTAAAGTCTCCTTCCCCTACCCTGGACTCGCTCGTTATCGAAGTCGAACTTAGCTTGAACCTCTTGGTTACCTACTAGGCTTCTGGAACTAAGTAAACAGCAATTAACAGTCCTTTGAAGCCTTAAAAACCCTTAGAAATGCTTGGAACACCTCATTAGACGCAGAGATCACACACTTGGACGCAGAACAACACCTTAGGTCACCAAACTGCATTGTTGGATGCAACCTAATATTGTTGGATGCAGGGCAGTACTCTGTGGGGTAAAAAATTGCTTCTTGGATGCAAGACAGTGTCTCTTAGATGCCTAGCACCCCTTTGAACCTTCTGGAAACTCTTTCTTTCCTCTCTCAAATTCTATGGAATGAAACTTTCTCAAGTTTAGTGTCCCCTAACATCTCAACGACAAACCTATTTATAAGAGCCCTTTAGAAGCTTAGTCACAGTCTCTTTATTTCTTGGCTTAACACATAACCCTCTTGCTTGTCCTTCAAAATGTGTCTATAGCCATGCAAGATGTCCCCTAGACGCATCATCTAGCTTCCTCCCAAGCCTTACCATGCATCTCATATGGCTCAAGGTAACCACTATGTGTTTCACTTTGTCCAACACACACATCATGCATTCCACTTGCGTTTCCCTCTCCAACCATGTGTTTCAACCTAGCTTTTCATTTGTAACTCTTTATGTATGCGCCCAACTCGGCTAATACCCATGAGTCATGCGTCCAAGCTTCCTTACCCAACCTCATGGACTCCTTTTTAACTCATCTACGTGTCCATGGTGACCTTCTCGAGCCTATGCATCCAACTTTCCTCTCCTATGCGTTGTACTCTTGTTTCCTTAGGCACACTTCCTTTGCTTTCAACATGAATCATCCAACACTTAGCCATTTTCCTCCAAGACCTTAGGGTATGCGTCCATCACACCCAACCTATCTTGTAATTAGCCAAATTTTCTCCCCCTAAGGAGAATGGTGCGTCCAACCTCTTTTCTTGTCCTAGACGTTATGTGTTCTAACTTTGTATTTTGCTTTAACTTTGACCAACTCACTCCCCTACCAATCATTCAACACTATGCATCCATGGGAGTTCCTTGGCTCTTGTACTTAGTCAAATTTTAGGCCCTTCATTCATTCCATGTACCTATCTTTGGCTTGACTCAAATTTGTTCCTCACCTAGACAAGGTTTCCCACACTTAGCCAAAATTCTAAAATTTCCTTCCCCTATGTGTTCCACATCCATATTCACCCGAAGTGTTGCTTTCAACTCCTACAACTCCTCCAACACTTAGCTAGAAATCTTCCCCAACATGAACTATGCGTTCATCTCCTATACTTAGCCCAAACATGGACTATGTGTCCAACACTTTTCTTATGGCCCATATGTTCTTTTCAACAATTTTGAGTACTTCAACACTTAGTTAAATTCTCCCTTAATCACCCTACCATGCATTCACCACCTTAACCATGCGTCCAAGGCTTGATTTTTCCTCCCAAGACGTGTTTTCACACTTAGTTCTAAGCTACCAAGCCACCCTCAATTATGCTTCCAACTTGTACTCCAATCAACTAGGGGTGTTTAAATAACCAGACAACCCAAACAACCCATACTATCCAACCTGAATTATAAGGGTTGGGTTGGGTTGGGTTGGGTTAATTAATACTTAGGTTGGGTTGGATTTTCTTTTTTCTTTTTTTTTTTTTTTTTTGGTATTTTTTGGGTTAGGTTGGGTCTCGGGTTTAAATTTTGAAAAATTCGGGTTGACCAAACTCAATCCAAATTACTAATTATAATTTCATATATATTACAAGTGCTATTAGGGTTTTTTCATTTTTGAGTCACCTTACCTCACCTCTGCCGATTGCCGCTCCTCTACTTCTACCGTCAACCGTGATTGTTGCTCCTACGGTACCATGACTGCTTGTTCTGCCCGTTCCGTTCTACTTGTCGTCGTCTGTGCTCACTGCTCAGATCAATCCGTTCATCTGCCATCATGCTCAGATCCAGTCATGACTGTCGATTTGTCTGTCGTCACTTCGCCGGTTCGTGTTCGTCGATAA

mRNA sequence

ATGGTGAAGGGCGAGCATAGAGTAAAGATCGAGCAGAAGGATGAAGAGGAAGAGGAACGGAGGCAGACTAGTAGGAAGAGAAAGTCATCCCAACCGTACACCCCTCTAGTTGATACGGTCAAGGTGACGAGTAAGGGACGACGATACATTCAACCAGGGGAACGCCCCACTGATAGGTCGCCCGTCCCTTACGATCCAGCTCATCGAGTGCCTAATGACATCATGAATGAATTCATGAGTTGGCTAACGAGCGAGGATATAGGTCCTCATAAGTCGGGCACGGGAATACTCTTCAGGAGGAATTGCACAACAGAGCAGTTGTTCGAGGAGCTTACACAAGACAATGAATGGGTCAAGAACGATTTCCTCATTCGACCGAAGAAGTGTGCACACCAGTTCACGACTTTGCCCTATGGCATATTGTCACCTTACCTCACCTCTGCCGATTGCCGCTCCTCTACTTCTACCGTCAACCGTGATTGTTGCTCCTACGGTACCATGACTGCTTGTTCTGCCCGTTCCGTTCTACTTGTCGTCGTCTGTGCTCACTGCTCAGATCAATCCGTTCATCTGCCATCATGCTCAGATCCAGTCATGACTGTCGATTTGTCTGTCGTCACTTCGCCGGTTCGTGTTCGTCGATAA

Coding sequence (CDS)

ATGGTGAAGGGCGAGCATAGAGTAAAGATCGAGCAGAAGGATGAAGAGGAAGAGGAACGGAGGCAGACTAGTAGGAAGAGAAAGTCATCCCAACCGTACACCCCTCTAGTTGATACGGTCAAGGTGACGAGTAAGGGACGACGATACATTCAACCAGGGGAACGCCCCACTGATAGGTCGCCCGTCCCTTACGATCCAGCTCATCGAGTGCCTAATGACATCATGAATGAATTCATGAGTTGGCTAACGAGCGAGGATATAGGTCCTCATAAGTCGGGCACGGGAATACTCTTCAGGAGGAATTGCACAACAGAGCAGTTGTTCGAGGAGCTTACACAAGACAATGAATGGGTCAAGAACGATTTCCTCATTCGACCGAAGAAGTGTGCACACCAGTTCACGACTTTGCCCTATGGCATATTGTCACCTTACCTCACCTCTGCCGATTGCCGCTCCTCTACTTCTACCGTCAACCGTGATTGTTGCTCCTACGGTACCATGACTGCTTGTTCTGCCCGTTCCGTTCTACTTGTCGTCGTCTGTGCTCACTGCTCAGATCAATCCGTTCATCTGCCATCATGCTCAGATCCAGTCATGACTGTCGATTTGTCTGTCGTCACTTCGCCGGTTCGTGTTCGTCGATAA

Protein sequence

MVKGEHRVKIEQKDEEEEERRQTSRKRKSSQPYTPLVDTVKVTSKGRRYIQPGERPTDRSPVPYDPAHRVPNDIMNEFMSWLTSEDIGPHKSGTGILFRRNCTTEQLFEELTQDNEWVKNDFLIRPKKCAHQFTTLPYGILSPYLTSADCRSSTSTVNRDCCSYGTMTACSARSVLLVVVCAHCSDQSVHLPSCSDPVMTVDLSVVTSPVRVRR
Homology
[Close]
BLAST of ClCG04G001780 vs. NCBI nr
Match: XP_038892557.1 (uncharacterized protein LOC120081601 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-06
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 0 

Query: 19  ERRQTSRKRKSSQPYTPLVDTVKVTSKGRRYIQPGERPT-DRSPVPYDPAHRVPNDIMNE 78
           + R+ SRKRK    YTP     K      ++  PG   +  RS V Y+ AH +P++IM +
Sbjct: 279 DSRRISRKRKPVDKYTPPAQAKK--KNVAKHPLPGVATSIFRSIVIYNVAHAIPHNIMTK 338

Query: 79  FMSWLTSEDIGPHKSGTGILFRRNC---TTEQLFEELTQDNE------------WVKNDF 138
            MSW++ ++       T    R N      +Q FEEL   N             ++K+ F
Sbjct: 339 MMSWISDDN-------TNNEVRENSFKPLDKQFFEELITPNSLVECDTINTLFYFMKDKF 398

Query: 139 LIRPKKCAHQFTTLPYGILSP 144
             RP  C H+FT LP G++SP
Sbjct: 399 YTRPDMCMHKFTILPIGVMSP 410

The following BLAST results are available for this feature:
BLAST of ClCG04G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892557.15.5e-0632.62uncharacterized protein LOC120081601 [Benincasa hispida][more]
BLAST of ClCG04G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G001780.1ClCG04G001780.1mRNA