ClCG04G001440 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G001440
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription elongation factor B polypeptide 3
Location	CG_Chr04: 4896749 .. 4897475 (+)
RNA-Seq Expression	ClCG04G001440
Synteny	ClCG04G001440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAGTTTGGTAAGAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAGTAAAATAACTACCTCCTTTTTTAATAATCTTTCCATTAACGAAGCTATAGATAGTTTGAAGTTTCTTGGAGATGTTGGGGATTCTGATTTCAATCTTCTAAACCGTATTTTGCCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGTTGTGGAAAAACTTCTATGAAAAAAAAAACGATTCTGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAGTGTATGAAGCAAAGATGGAAGAGTTAGAAAAGAAGGCCAAGAAAATTGAGGCTCGATATATACAAAACCGTCGAAAGGAAAAAGCTCAAAAAGAAAGCCGTCAAATAATATTTTGTGGGGGTTCTTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAACCGAATGAGTTTGGATGCAATACCAACGAGACCAAGATTTTGAAGAAGTCCAAGAGAGAAGAACAAATTTGTGAAGTTCCATTTACGATCAATAATAAGAAGAAACAAAGCTTTGGAGGGACAACCAAACCTAGACAAGATACTAAGTCAAGCAAGACTAAGCCAAGCAAGATATGGAAGAAGGCAAAGAGAGAAGCGTTGGGGTGTATAGAGACGAAGAACCTAATAGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MCEEVSKITTSFFNNLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK

Homology

[Close]

BLAST of ClCG04G001440 vs. NCBI nr
Match: XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-75
Identity = 168/242 (69.42%), Postives = 190/242 (78.51%), Query Frame = 0


Query: 1   MCEEVSKITTSFFNNLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKG 60
           MCEEVSKI +SF ++ SINEAIDSL+FLGDVGD+D ++L RILPHCT+DQLMHIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEA 120
           RDLTPVTDKLWKNFYEK   KNDSD VI++MK+KKESFKWKQ+YEAKME LEKKA +IEA
Sbjct: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNRRKEKAQKESRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQI 180
           RY QN +KE A+K+SR+IIFC   SS  NKKRR EG      CNT E+KILKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKS-ECNTTESKILKKPNREAQM 180

Query: 181 CEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVM 239
           C+V          S GGTTKP       +TK SKI KKAKREAL CIETKN+IAFRRN M
Sbjct: 181 CQV----------SSGGTTKP-----GHRTKQSKILKKAKREALQCIETKNVIAFRRNAM 226

[Close]

BLAST of ClCG04G001440 vs. NCBI nr
Match: XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 9.3e-71
Identity = 162/242 (66.94%), Postives = 184/242 (76.03%), Query Frame = 0


Query: 1   MCEEVSKITTSFFNNLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKG 60
           MCEEVSKI +SF ++ SINEAID+L+FL DVGD+D ++L RILPHCT+DQL+HIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEA 120
           RDLT VTDKLWKNFY K   KND D  IERMK+KKESFKWKQ+YEAKME LEKKA +IEA
Sbjct: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNRRKEKAQKESRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQI 180
           RY QN +KE A+K+SR+IIFC   SS  NKK R EG      CNT E+KILKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKS-ECNTTESKILKKPNREAQM 180

Query: 181 CEVPFTINNKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVM 239
           C+V          S GGTTKP       +TK SKI KKAKREAL CIETKN+IAFRRN M
Sbjct: 181 CQV----------SSGGTTKP-----GHRTKQSKILKKAKREALQCIETKNVIAFRRNAM 226

[Close]

BLAST of ClCG04G001440 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-48
Identity = 124/224 (55.36%), Postives = 149/224 (66.52%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  D N L  ILPHCT+DQLMHIEN SKGRDLTPVT+KLWK FYEK
Sbjct: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFYEK 64

Query: 78  KNDSD---FVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQ 137
           K   D    V+ERMKH KESF+WKQ+YE KM+ELE+KA +IE RYIQN R EK +K+SRQ
Sbjct: 65  KFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K + +IC+V    NNK+  S+GG 
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVQTKICQVSSATNNKR--SYGGG 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           T             SKI KKA++E    IETKNLIAFRRN +QK
Sbjct: 185 T-------------SKILKKARKETRQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG04G001440 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 4.2e-47
Identity = 117/224 (52.23%), Postives = 151/224 (67.41%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG +D N L  ILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  ---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQ 137
              K+D + V++RMKH KESF+WKQ+YE K++ELE KA ++E RYI+N + EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K   ++C+V  + NN K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVHTKVCQVS-SANNNKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
                         SKI KKA++E L  IETKNLIAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG04G001440 vs. NCBI nr
Match: KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-46
Identity = 120/224 (53.57%), Postives = 149/224 (66.52%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG++D N L RILPHCT++QLM IEN SKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64

Query: 78  KNDSDF---VIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQ 137
           K   D    V+E MKH KESFKWKQ+YE K++ELE+KA +IE RYIQN + EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K   +IC+V  + NN K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVHTKICQVS-SANNNKRSYVGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
                         SKI KKA++E L  IETKN IAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNAIAFRRNAVQK 192

[Close]

BLAST of ClCG04G001440 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 117/224 (52.23%), Postives = 151/224 (67.41%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG +D N L  ILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  ---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQ 137
              K+D + V++RMKH KESF+WKQ+YE K++ELE KA ++E RYI+N + EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKK K   ++C+V  + NN K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKPKVHTKVCQVS-SANNNKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
                         SKI KKA++E L  IETKNLIAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG04G001440 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46
Identity = 119/224 (53.12%), Postives = 149/224 (66.52%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG +D N L  ILPHCT++QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KNDSDF---VIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKESRQ 137
           K   D    V+E MKH KESFKWKQ+YE K++ELE+KA +IE RYIQN + EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQSFGGT 197
           +  C            E  P+        +K+LKKSK   + C+V  + +N K+   GGT
Sbjct: 125 VKIC------------EISPS--------SKVLKKSKVHTKFCQVS-SAHNDKRSYLGGT 184

Query: 198 TKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
                         SKI KKA++E L  IETKN+IAFRRN +QK
Sbjct: 185 --------------SKILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of ClCG04G001440 vs. ExPASy TrEMBL
Match: A0A0A0KJR8 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD+D   L  IL HCT DQL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K+D D V+     K E+FKW  +Y AKM+ELE +AKKIE R IQ+ +KEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKPNEFGCNTNETKILKKSKREEQICEVPFTINNKKKQS 191
           SRQI+FCG   S ++ K     +   F  NT ++  LKK+KRE  + +V  T +NK+  S
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS-TSSNKEWNS 185

[Close]

BLAST of ClCG04G001440 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+++FLGDVG++D +LL RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+ K+ +F+W Q+YEAKM+++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE 174
           SRQI  C    P + KR F G    +     + KILKK+K E
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of ClCG04G001440 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L +N+AID+++FLGDVG++D +LL RILPHCT+DQLMH+E SS+GRDLTPVTDKLWK F
Sbjct: 12  DLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKF 71

Query: 75  YEK---KNDSDFVIERMKHKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQKE 134
           YE+   K  +  VIERM+ K+ +F+W Q+YEAKM+++EK   K   R  Q+  KE A+K+
Sbjct: 72  YERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQ 131

Query: 135 SRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETKILKKSKRE 174
           SRQI  C    P + KR F G    +     + KILKK+K E
Sbjct: 132 SRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIE 173

[Close]

BLAST of ClCG04G001440 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-21
Identity = 75/234 (32.05%), Postives = 127/234 (54.27%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L + +AID++K++G VG  DF LL +IL HCT++QL HIE+++   DL+P+TDK WK F
Sbjct: 15  DLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGF 74

Query: 75  YEK---KNDSDFVIERMK-HKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQK 134
           Y+K   + D   +IE ++ +K   FKW+ +YE K+  +++K K++  R  +  + E  +K
Sbjct: 75  YKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERK 134

Query: 135 ESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETK--ILKKSK----REEQICEVPFTIN 194
           +SRQ   C  + P   KR F G  +  G N    K  I+KK+K    + +++  +     
Sbjct: 135 QSRQTKVCSKAPP--SKRPFWGN-SASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 194

Query: 195 NKKKQSFGGTTKPRQDTKSSKTKPSKIWKKAKREALGCIETKNLIAFRRNVMQK 239
           N  ++SF  +T  +    ++    S+      R         NL   ++N +QK
Sbjct: 195 NTIQKSFSISTPKKTGLSANSPSTSRSIPYGGR---------NLTETKKNTIQK 236

[Close]

BLAST of ClCG04G001440 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-21
Identity = 69/206 (33.50%), Postives = 117/206 (56.80%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDSDFNLLNRILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNF 74
           +L + +AID++K++G VG  DF LL +IL HCT++QL HIE+++   DL+P+TDK WK F
Sbjct: 15  DLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGF 74

Query: 75  YEK---KNDSDFVIERMK-HKKESFKWKQVYEAKMEELEKKAKKIEARYIQNRRKEKAQK 134
           Y+K   + D   +IE ++ +K   FKW+ +YE K+  +++K K++  R  +  + E  +K
Sbjct: 75  YKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERK 134

Query: 135 ESRQIIFCGGSSPINKKRRFEGKPNEFGCNTNETK--ILKKSK----REEQICEVPFTIN 194
           +SRQ   C  + P   KR F G  +  G N    K  I+KK+K    + +++  +     
Sbjct: 135 QSRQTKVCSKAPP--SKRPFWGN-SASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 194

Query: 195 NKKKQSFGGTTKPRQDTKSSKTKPSK 211
           N  ++SF  +   R    ++    S+
Sbjct: 195 NTIQKSFSISAPKRTGLSANAPSTSR 217

The following BLAST results are available for this feature:

BLAST of ClCG04G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885873.1	1.6e-75	69.42	uncharacterized protein LOC120076176 [Benincasa hispida]	[more]
XP_038885879.1	9.3e-71	66.94	uncharacterized protein LOC120076185 [Benincasa hispida]	[more]
KAG6582214.1	2.9e-48	55.36	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979571.1	4.2e-47	52.23	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582092.1	2.1e-46	53.57	hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG04G001440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G001440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR58	2.0e-47	52.23	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1ITM2	3.8e-46	53.13	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A0A0KJR8	1.9e-37	53.89	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51...	[more]
A0A5D3BGR1	1.6e-36	53.09	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	1.6e-36	53.09	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of ClCG04G001440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	5.5e-21	32.05	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	9.4e-21	33.50	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..125
None	No IPR available	GENE3D	6.10.250.3180		coord: 24..128 e-value: 8.2E-20 score: 72.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..211
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 14..173
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..135 e-value: 1.7E-20 score: 73.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G001440.1	ClCG04G001440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0047631	ADP-ribose diphosphatase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0035529	NADH pyrophosphatase activity