ClCG04G000947 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000947
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag/pol protein
Location	CG_Chr04: 3127830 .. 3128195 (+)
RNA-Seq Expression	ClCG04G000947
Synteny	ClCG04G000947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

mRNA sequence

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

Coding sequence (CDS)

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

Protein sequence

MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILRASII

Homology

[Close]

BLAST of ClCG04G000947 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 131 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 190

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

[Close]

BLAST of ClCG04G000947 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1    MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

[Close]

BLAST of ClCG04G000947 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1    MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 940  MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 999

Query: 61   VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 1000 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

[Close]

BLAST of ClCG04G000947 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of ClCG04G000947 vs. NCBI nr
Match: TYK17670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of ClCG04G000947 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 2    LVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYV 61
            L FG  D IL GYTD+D   D D+RKS+ G +FTF+GG + WQS  Q C+A ST EA Y+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESI 116
            AA E  KE++WL++FL +L +         +YCD+   +  SK    H   + I
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHI 1276

[Close]

BLAST of ClCG04G000947 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 11   LIGYTDSDFQIDKDSRKSTLGSVF-TFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKE 70
            +IGY DSD+   +  RKST G +F  F+  ++ W + +Q  +A S+ EA Y+A  EA +E
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   VVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESI 116
             +WL+  LT + I   +  PI +Y DN G ++ +  P  H   + I
Sbjct: 1308 ALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHI 1351

[Close]

BLAST of ClCG04G000947 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 11  LIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEV 70
           L+GY+D+D+  D +SR+ST G +F  NGG V W+S KQ  +A S+ E  Y+A  EAT+E 
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1    MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

[Close]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1    MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 940  MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 999

Query: 61   VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 1000 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

[Close]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 131 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 190

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           VAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

[Close]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL
Match: A0A5D3D214 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14220G00010 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG VANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of ClCG04G000947 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-11
Identity = 33/102 (32.35%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 14  YTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWL 73
           ++D+ FQ  KD+R+ST G        ++ W+S KQ  ++ S+ EA Y A   AT E++WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 74  RKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESI 116
            +F  +L++   +S P  L+CDN+  +  +     H   + I
Sbjct: 505 AQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHI 544

The following BLAST results are available for this feature:

BLAST of ClCG04G000947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042496.1	4.0e-46	79.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	4.0e-46	79.49	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	4.0e-46	79.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043328.1	2.0e-45	78.63	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK17670.1	2.0e-45	78.63	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG04G000947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.7e-20	43.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-12	35.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.2e-10	50.79	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of ClCG04G000947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.9e-46	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	1.9e-46	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	1.9e-46	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5D3D214	9.7e-46	78.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14220G00...	[more]
A0A5A7TKJ4	9.7e-46	78.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023...	[more]

BLAST of ClCG04G000947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.6e-11	32.35	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 35..98
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 35..98
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..109 e-value: 2.92454E-41 score: 131.436

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000947.1	ClCG04G000947.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding