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ClCG04G000710 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGGTCTTAGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGGTAATTAAGGATATTGTGATTATCGATTCAGACAGCCAATGTTGTAGATTCTGACAAATCCAAGGTTGCAGATCTAGACAGATCCTCCAAGGTTGCAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT SSRSVKIGAARQIKLPVLKLLIFFEQLEIDYILTSTKSNKDPNRSKTAYLAEASQSKFDPFTNSNKYEKDNKRICGHLLSHMNDALFN Homology
BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0045097.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYJ96231.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0
BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of ClCG04G000710 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0
BLAST of ClCG04G000710 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]) HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07 Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0
BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3BCA1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00190 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0
BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0
BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07 Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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