ClCG04G000710 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G000710
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr04: 2396278 .. 2396646 (+)
RNA-Seq ExpressionClCG04G000710
SyntenyClCG04G000710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGGTCTTAGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGGTAATTAAGGATATTGTGATTATCGATTCAGACAGCCAATGTTGTAGATTCTGACAAATCCAAGGTTGCAGATCTAGACAGATCCTCCAAGGTTGCAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT

mRNA sequence

TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT

Coding sequence (CDS)

TCTTCTCGATCTGTCAAAATTGGAGCAGCTAGACAGATTAAACTACCTGTGCTGAAGCTCTTGATTTTCTTCGAGCAACTAGAGATCGACTATATCCTCACCTCCACCAAATCTAATAAAGATCCAAACAGATCCAAAACTGCATATCTAGCAGAAGCTAGTCAGTCCAAGTTTGATCCTTTCACTAATTCAAACAAGTATGAGAAAGACAACAAAAGAATATGTGGACATCTTCTCAGCCACATGAATGATGCATTATTCAAT

Protein sequence

SSRSVKIGAARQIKLPVLKLLIFFEQLEIDYILTSTKSNKDPNRSKTAYLAEASQSKFDPFTNSNKYEKDNKRICGHLLSHMNDALFN
Homology
BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0045097.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYJ96231.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYILTSTKSNKDP------------NRSKTAYLAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+LT+  S+ DP            +   +  +A A Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLSSSDPPATTSTSSDPESSTGPSTTIAVADQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM+D++FN
Sbjct: 90  YAKDNKTVRGHLLNHMSDSMFN 111

BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL----------TSTKSNKDPNRSKTAY---LAEASQSKFDPFTNSN 78
           KLLIFFEQLE+DYIL          T+T ++ DP  S+  Y   LA   Q K D   +  
Sbjct: 30  KLLIFFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPE 89

Query: 79  KYEKDNKRICGHLLSHMNDALFN 89
           KY KDNK +  HLL+HM+D +F+
Sbjct: 90  KYAKDNKTVRAHLLNHMSDPMFD 112

BLAST of ClCG04G000710 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL----------TSTKSNKDPNRSKTAY---LAEASQSKFDPFTNSN 78
           KLLIFFEQLE+DYIL          T+T ++ DP  S+  Y   LA   Q K D   +  
Sbjct: 30  KLLIFFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPE 89

Query: 79  KYEKDNKRICGHLLSHMNDALFN 89
           KY KDNK +  HLL+HM+D +F+
Sbjct: 90  KYAKDNKTVRAHLLNHMSDPMFD 112

BLAST of ClCG04G000710 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYILTSTKSNKDPNRSKTAY------------LAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+LT+   + DP  + + Y            +A A Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPESSTGSPTTVAVADQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM++ +F+
Sbjct: 90  YAKDNKTVRGHLLNHMSEPMFD 111

BLAST of ClCG04G000710 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL------------TSTKSNKDPNRSKTAYLAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+L            TST SN + +      +A   Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM+D +F+
Sbjct: 90  YAKDNKTVRGHLLNHMSDPMFD 111

BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3BCA1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00190 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYILTSTKSNKDP------------NRSKTAYLAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+LT+  S+ DP            +   +  +A A Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLSSSDPPATTSTSSDPESSTGPSTTIAVADQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM+D++FN
Sbjct: 90  YAKDNKTVRGHLLNHMSDSMFN 111

BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL----------TSTKSNKDPNRSKTAY---LAEASQSKFDPFTNSN 78
           KLLIFFEQLE+DYIL          T+T ++ DP  S+  Y   LA   Q K D   +  
Sbjct: 30  KLLIFFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPE 89

Query: 79  KYEKDNKRICGHLLSHMNDALFN 89
           KY KDNK +  HLL+HM+D +F+
Sbjct: 90  KYAKDNKTVRAHLLNHMSDPMFD 112

BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL----------TSTKSNKDPNRSKTAY---LAEASQSKFDPFTNSN 78
           KLLIFFEQLE+DYIL          T+T ++ DP  S+  Y   LA   Q K D   +  
Sbjct: 30  KLLIFFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPE 89

Query: 79  KYEKDNKRICGHLLSHMNDALFN 89
           KY KDNK +  HLL+HM+D +F+
Sbjct: 90  KYAKDNKTVRAHLLNHMSDPMFD 112

BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYILTSTKSNKDPNRSKTAY------------LAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+LT+   + DP  + + Y            +A A Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPESSTGSPTTVAVADQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM++ +F+
Sbjct: 90  YAKDNKTVRGHLLNHMSEPMFD 111

BLAST of ClCG04G000710 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 19  KLLIFFEQLEIDYIL------------TSTKSNKDPNRSKTAYLAEASQSKFDPFTNSNK 78
           KLLIFFEQLE+DY+L            TST SN + +      +A   Q K D   +  K
Sbjct: 30  KLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEK 89

Query: 79  YEKDNKRICGHLLSHMNDALFN 89
           Y KDNK + GHLL+HM+D +F+
Sbjct: 90  YAKDNKTVRGHLLNHMSDPMFD 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045097.13.2e-0845.12ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYJ96231.1 ty1-cop... [more]
KAA0040554.13.5e-0745.78ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05597.13.5e-0745.78ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041580.14.6e-0742.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-cop... [more]
XP_008456453.16.0e-0743.90PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCA11.5e-0845.12Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C1A61.7e-0745.78Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TAR91.7e-0745.78Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D7X72.2e-0742.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UFB42.9e-0743.90Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000710.1ClCG04G000710.1mRNA