ClCG04G000540 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000540
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-type domain-containing protein
Location	CG_Chr04: 1990003 .. 1990585 (-)
RNA-Seq Expression	ClCG04G000540
Synteny	ClCG04G000540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTTCTACTCCTATTCACTGTCGTCTGTACGGCACCGGCAATGAATTACGCTATTTCGAACGTACCATCTCTGACTCTCCGGTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCCACTCCATTCCACAATGCACGCTTCTCTCTCTCTTCGCGCCAACTTCAAGATCCCTTCGCCAATTCCTCTCCTCACTCCACATTAGCCCCACCGCTTCCGAAGTTATTGCTGGGCAAATCGTTTCCTACATCGTCCAGATGTGTAATGGAAACAGAGAAAGGAATTTCTATATCATCGCGGAGGTTGATTGATGGAAGAACAATCAATGGCCGGAGTACCGGATTCGGCGGTGGAGAGGGTTTGGAGGTTGAAATGGGATGAGAAGAAGGAGGGTTTGGGAGATTGCATTATCTGTTTGGATGAATTGGGTTGTGAAAAGAGGGAGGTGATAAGGATCCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAAGGACCACAGTTCTTGCCCATTGTGTATTAAGCCCATTGCCATTGCAAGTGAAACAACTCATTTTTCATGA

mRNA sequence

ATGTCTACTTCTACTCCTATTCACTGTCGTCTGTACGGCACCGGCAATGAATTACGCTATTTCGAACGTACCATCTCTGACTCTCCGGTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCCACTCCATTCCACAATGCACGCTTCTCTCTCTCTTCGCGCCAACTTCAAGATCCCTTCGCCAATTCCTCTCCTCACTCCACATTAGCCCCACCGCTTCCGAAGTTATTGCTGGGCAAATCGTTTCCTACATCGTCCAGATGTGTAATGGAAACAGAGAAAGGAATTTCTATATCATCGCGGAGGTTGATTGATGGAAGAACAATCAATGGCCGGAGTACCGGATTCGGCGGTGGAGAGGGTTTGGAGAAGGAGGGTTTGGGAGATTGCATTATCTGTTTGGATGAATTGGGTTGTGAAAAGAGGGAGGTGATAAGGATCCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAAGGACCACAGTTCTTGCCCATTGTGTATTAAGCCCATTGCCATTGCAAGTGAAACAACTCATTTTTCATGA

Coding sequence (CDS)

ATGTCTACTTCTACTCCTATTCACTGTCGTCTGTACGGCACCGGCAATGAATTACGCTATTTCGAACGTACCATCTCTGACTCTCCGGTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCCACTCCATTCCACAATGCACGCTTCTCTCTCTCTTCGCGCCAACTTCAAGATCCCTTCGCCAATTCCTCTCCTCACTCCACATTAGCCCCACCGCTTCCGAAGTTATTGCTGGGCAAATCGTTTCCTACATCGTCCAGATGTGTAATGGAAACAGAGAAAGGAATTTCTATATCATCGCGGAGGTTGATTGATGGAAGAACAATCAATGGCCGGAGTACCGGATTCGGCGGTGGAGAGGGTTTGGAGAAGGAGGGTTTGGGAGATTGCATTATCTGTTTGGATGAATTGGGTTGTGAAAAGAGGGAGGTGATAAGGATCCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAAGGACCACAGTTCTTGCCCATTGTGTATTAAGCCCATTGCCATTGCAAGTGAAACAACTCATTTTTCATGA

Protein sequence

MSTSTPIHCRLYGTGNELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFANSSPHSTLAPPLPKLLLGKSFPTSSRCVMETEKGISISSRRLIDGRTINGRSTGFGGGEGLEKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETTHFS

Homology

[Close]

BLAST of ClCG04G000540 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-33
Identity = 91/223 (40.81%), Postives = 122/223 (54.71%), Query Frame = 0


Query: 2   STSTPIHCRLYGTGN---------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFS 61
           + STPI  RLYGTG+         +  YFER IS SPV G PPRILHETP  PFHNA F 
Sbjct: 4   AASTPIQYRLYGTGSGTGNGVLEVQTSYFERMISVSPVTGRPPRILHETPRIPFHNALFY 63

Query: 62  LSSRQLQDPFANSSPHST---LAPPLPKL-----------LLGKSFPTSSRCVMETE--K 121
           LS  QLQ+P    S   +   + P   ++           ++ ++  ++ R + E +  +
Sbjct: 64  LSLHQLQNPLFYISQFLSSLNICPAACEIMARQIASYIDRMINENRESNFRIIAEVDFSR 123

Query: 122 GISISSRRLIDGRTINGRSTGFGGG----EGLEK------------EGLGDCIICLDELG 181
            I +    +  G  +   +  F        G+EK            E LGDC ICL+EL 
Sbjct: 124 VIWMEEHSIYGGDAMAEETVVFDEAPPPRRGVEKVAVERVRELKSQEELGDCCICLEELS 183

Query: 182 CEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASET 184
           CEKREVIRIPCGHVYHESC+FKWL+ ++SCPLC KP+ +  ++
Sbjct: 184 CEKREVIRIPCGHVYHESCVFKWLRKNNSCPLCRKPLPLNDDS 226

[Close]

BLAST of ClCG04G000540 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 87/219 (39.73%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ 
Sbjct: 6   SNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNALVYLTL 65

Query: 64  RQLQDP------FANS-----SPHSTLAPPLPKLLL---GKSFPTSSRCVMET------- 123
           RQLQ P      F +S     +   ++A  +   +L    ++   +   + E        
Sbjct: 66  RQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIW 125

Query: 124 ----EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEK 183
               E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEK
Sbjct: 126 LELEEQSMGAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEK 185

[Close]

BLAST of ClCG04G000540 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-27
Identity = 84/213 (39.44%), Postives = 111/213 (52.11%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS 
Sbjct: 6   SNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSL 65

Query: 64  RQLQDPF---------ANSSPHST--LAPPLPKLLL---GKSFPTSSRCVMETE------ 123
           RQLQ P           N  P ++  +A  +   +L    ++  T+   + E +      
Sbjct: 66  RQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIW 125

Query: 124 ------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKR 178
                  G       ++D       R  G   GE L    + E LGDC ICLDEL CEKR
Sbjct: 126 LPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKR 185

[Close]

BLAST of ClCG04G000540 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-27
Identity = 84/213 (39.44%), Postives = 111/213 (52.11%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS 
Sbjct: 6   SNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSL 65

Query: 64  RQLQDPF---------ANSSPHST--LAPPLPKLLL---GKSFPTSSRCVMETE------ 123
           RQLQ P           N  P ++  +A  +   +L    ++  T+   + E +      
Sbjct: 66  RQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIW 125

Query: 124 ------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKR 178
                  G       ++D       R  G   GE L    + E LGDC ICLDEL CEKR
Sbjct: 126 LPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKR 185

[Close]

BLAST of ClCG04G000540 vs. NCBI nr
Match: KAG6603243.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-24
Identity = 86/235 (36.60%), Postives = 113/235 (48.09%), Query Frame = 0


Query: 2   STSTPIHCRLYGTGNE----------LRYFERTISDSPVAGHPPRILHETPPTPFHNARF 61
           + STPI  RLY    +          +R F R IS S   G PP+IL ET PTP ++A F
Sbjct: 4   AASTPIQYRLYTAAAQSETHKALEVRMRSFNRLISASSFPGVPPQILFETRPTPVNDALF 63

Query: 62  SLSSRQLQDPFAN-----SSPHS----------TLAPPLPKLLLGKSFPTSSRCVMETEK 121
            LS RQL DP  +     S+ H            +A  + +L  G    TS   V+E + 
Sbjct: 64  HLSLRQLHDPLFHIPRLLSTLHIHAAACEVIGWKIASQIAQLSAGNR-ETSFHIVVEVDF 123

Query: 122 GISISSRRLIDGRTINGRSTGFGGGEGL---------------------------EKEGL 181
             +I   +      + G   G G G GL                           E++ L
Sbjct: 124 IQNIWMGQ------VAGMHQGQGNGGGLVEETLVLDELPARRRQRRGVVARVEVEEEKEL 183

Query: 182 GDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT 185
           GDC ICLDE+  +KREVIR PCGHVYHESCIF+WL  H+SCPLC +P+ +  ++T
Sbjct: 184 GDCCICLDEMMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEEDST 231

[Close]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 132 CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIA 179
           C IC D+   ++  V ++PC H+YHE+CI  WL  HS+CP+C K +A
Sbjct: 253 CSICWDDFKIDE-TVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLA 298

[Close]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot
Match: Q641J8 (E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-07
Identity = 21/57 (36.84%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 125 EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS 182
           E + L  C +C+ E   E  ++ ++PC H YH  CI +WL ++S+CP+C + + +AS
Sbjct: 561 ENDALKTCSVCITEY-TEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAS 616

[Close]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot
Match: Q9H9V4 (RING finger protein 122 OS=Homo sapiens OX=9606 GN=RNF122 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 132 CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT 185
           C +CL++    K E+  +PC H +H  C+ KWL+    CP+C KPIA  SE T
Sbjct: 93  CAVCLEDFK-GKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIASPSEAT 144

[Close]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot
Match: Q9BV68 (E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-07
Identity = 24/65 (36.92%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 121 GEGLEKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIA 180
           G GLE      C +C D+    +R V ++PC H++H+ CI  WL+ H SCP+C K +   
Sbjct: 224 GSGLE------CPVCKDDYALGER-VRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQ 281

Query: 181 SETTH 186
           +  T+
Sbjct: 284 NTATN 281

[Close]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-07
Identity = 22/59 (37.29%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 122 EGLEKEGLGD--CIICLDELG-CEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI 178
           E L  + L D  C IC D++   ++++  ++PCGH++ ++C+ KWL++H +CPLC K +
Sbjct: 95  EPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153

[Close]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 87/219 (39.73%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ 
Sbjct: 6   SNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNALVYLTL 65

Query: 64  RQLQDP------FANS-----SPHSTLAPPLPKLLL---GKSFPTSSRCVMET------- 123
           RQLQ P      F +S     +   ++A  +   +L    ++   +   + E        
Sbjct: 66  RQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIW 125

Query: 124 ----EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEK 183
               E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEK
Sbjct: 126 LELEEQSMGAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEK 185

[Close]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 87/219 (39.73%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ 
Sbjct: 6   SNPIQYRLYGSGTGGNGILEVRISFFEQMISLSPVTGRPHQILHQTPRIPYHNALVYLTL 65

Query: 64  RQLQDP------FANS-----SPHSTLAPPLPKLLL---GKSFPTSSRCVMET------- 123
           RQLQ P      F +S     +   ++A  +   +L    ++   +   + E        
Sbjct: 66  RQLQSPLFYITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIW 125

Query: 124 ----EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEK 183
               E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEK
Sbjct: 126 LELEEQSMGAGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDELSCEK 185

[Close]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 84/213 (39.44%), Postives = 111/213 (52.11%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS 
Sbjct: 6   SNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSL 65

Query: 64  RQLQDPF---------ANSSPHST--LAPPLPKLLL---GKSFPTSSRCVMETE------ 123
           RQLQ P           N  P ++  +A  +   +L    ++  T+   + E +      
Sbjct: 66  RQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIW 125

Query: 124 ------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKR 178
                  G       ++D       R  G   GE L    + E LGDC ICLDEL CEKR
Sbjct: 126 LPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKR 185

[Close]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 84/213 (39.44%), Postives = 111/213 (52.11%), Query Frame = 0


Query: 4   STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSS 63
           S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS 
Sbjct: 6   SNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSL 65

Query: 64  RQLQDPF---------ANSSPHST--LAPPLPKLLL---GKSFPTSSRCVMETE------ 123
           RQLQ P           N  P ++  +A  +   +L    ++  T+   + E +      
Sbjct: 66  RQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIW 125

Query: 124 ------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKR 178
                  G       ++D       R  G   GE L    + E LGDC ICLDEL CEKR
Sbjct: 126 LPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKR 185

[Close]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL
Match: A0A6J1EKL4 (E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111435522 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-22
Identity = 78/209 (37.32%), Postives = 103/209 (49.28%), Query Frame = 0


Query: 18  LRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP-------FANSSPHST 77
           +R F R IS S   G PP+IL ET PTP ++A F LS RQL DP        +    H+ 
Sbjct: 1   MRSFNRLISASSFPGVPPQILFETRPTPVNDALFHLSLRQLHDPLFHIPRLLSTLDIHAA 60

Query: 78  --------LAPPLPKLLLGKSFPTSSRCVMETEKGISISSRRLIDGRTINGRSTGFGGGE 137
                   +A  + +L  G    TS   V+E +   +I   +      + G   G G G 
Sbjct: 61  ACEVIGWKIASQIAQLSAGNR-ETSFHIVVEVDFIQNIWMGQ------VAGMRQGQGNGG 120

Query: 138 GL---------------------------EKEGLGDCIICLDELGCEKREVIRIPCGHVY 185
           GL                           E++ LGDC ICLDE+  +KREVIR PCGHVY
Sbjct: 121 GLVEETVVLDELPARRRQRRGVVARVEVEEEKELGDCCICLDEMMNKKREVIRTPCGHVY 180

[Close]

BLAST of ClCG04G000540 vs. TAIR 10
Match: AT1G18770.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 132 CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLC 174
           CIICL+E   E R V+ +PCGH + + C+ KW + + SCPLC
Sbjct: 59  CIICLEEFS-EGRRVVTLPCGHDFDDECVLKWFETNHSCPLC 99

[Close]

BLAST of ClCG04G000540 vs. TAIR 10
Match: AT5G41430.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-08
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 124 LEKEGLGD--CIICLDELGCEKREVIRI-PCGHVYHESCIFKWLKDHSSCPLC 174
           +EKEG  +  C ICL+EL  +  E+IRI  C HV+H SCI  WLK + SCP C
Sbjct: 107 IEKEGFDEIGCSICLEELE-DGHEIIRIKKCRHVFHRSCIDSWLKQNRSCPNC 158

[Close]

BLAST of ClCG04G000540 vs. TAIR 10
Match: AT5G05530.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-08
Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 129 LGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI 178
           + +C ICL+EL  ++  +    C HV+H+ C+++W++  SSCPLC  PI
Sbjct: 145 VNECTICLEELCHDEESIETHDCCHVFHKLCLWRWIRTKSSCPLCRHPI 193

[Close]

BLAST of ClCG04G000540 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-08
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 131 DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS 182
           +C +C D  ELG E ++   +PC H+YH  CI  WL  H+SCP+C + +  AS
Sbjct: 189 NCPVCKDEFELGSEAKQ---MPCNHIYHSDCIVPWLVQHNSCPVCRQELPSAS 238

[Close]

BLAST of ClCG04G000540 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-08
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 131 DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS 182
           +C +C D  ELG E ++   +PC H+YH  CI  WL  H+SCP+C + +  AS
Sbjct: 189 NCPVCKDEFELGSEAKQ---MPCNHIYHSDCIVPWLVQHNSCPVCRQELPSAS 238

The following BLAST results are available for this feature:

BLAST of ClCG04G000540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883574.1	2.1e-33	40.81	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]
XP_016899530.1	1.1e-29	39.73	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 ...	[more]
XP_004144954.1	1.0e-27	39.44	uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical ...	[more]
XP_011659694.1	1.0e-27	39.44	E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical pro...	[more]
KAG6603243.1	8.7e-24	36.60	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]

BLAST of ClCG04G000540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VHI7	1.6e-07	46.81	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
Q641J8	2.7e-07	36.84	E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV...	[more]
Q9H9V4	3.5e-07	43.40	RING finger protein 122 OS=Homo sapiens OX=9606 GN=RNF122 PE=1 SV=2	[more]
Q9BV68	4.5e-07	36.92	E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2	[more]
Q9Y7K6	4.5e-07	37.29	Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of ClCG04G000540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1S5	5.2e-30	39.73	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	5.2e-30	39.73	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A0A0K696	4.8e-28	39.44	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P...	[more]
A0A0A0K2W2	4.8e-28	39.44	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 P...	[more]
A0A6J1EKL4	3.0e-22	37.32	E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of ClCG04G000540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18770.1	1.1e-08	50.00	RING/U-box superfamily protein	[more]
AT5G41430.1	2.5e-08	52.83	RING/U-box superfamily protein	[more]
AT5G05530.1	2.5e-08	40.82	RING/U-box superfamily protein	[more]
AT2G40830.2	4.2e-08	43.40	RING-H2 finger C1A	[more]
AT2G40830.1	4.2e-08	43.40	RING-H2 finger C1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 132..173 e-value: 3.3E-7 score: 39.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 131..173 e-value: 5.9E-12 score: 45.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 132..173 score: 12.356501
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 112..178 e-value: 3.3E-16 score: 60.7
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 49..173
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 49..173
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 131..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000540.1	ClCG04G000540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0008152	metabolic process