ClCG04G000430 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000430
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Acetate kinase
Location	CG_Chr04: 1728058 .. 1728399 (+)
RNA-Seq Expression	ClCG04G000430
Synteny	ClCG04G000430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCATTCTGTTTATGGAGAAGATTGCCAGGAGATTCTGAATATTGAGAATAATGATTATGTGCAAACGTTGGGACTGTTTGCAGTGGTGGAGTATTCACATGAGGAACCACCAATATCATTACGGGTATCAATAAAACTAACTTTCATTTCTGTGCTAAGGGCATATCTTTGTTCATTGGAGAATAAGGATAAAGAAAAATATATCCTTATAGTGAAGGTGGAACAATCGGATCCAACACACCCAAAATTTGAAACTGAATATGAGGCGACTGTGGTTCATAATAAAGTTAAACGCTCTTGGGATAACTTAGCCTTTCTACCTCACCCTACAGAATGA

mRNA sequence

ATGAGTCATTCTGTTTATGGAGAAGATTGCCAGGAGATTCTGAATATTGAGAATAATGATTATGTGCAAACGTTGGGACTGTTTGCAGTGGTGGAGTATTCACATGAGGAACCACCAATATCATTACGGGTATCAATAAAACTAACTTTCATTTCTGTGCTAAGGGCATATCTTTGTTCATTGGAGAATAAGGATAAAGAAAAATATATCCTTATAGTGAAGGTGGAACAATCGGATCCAACACACCCAAAATTTGAAACTGAATATGAGGCGACTGTGGTTCATAATAAAGTTAAACGCTCTTGGGATAACTTAGCCTTTCTACCTCACCCTACAGAATGA

Coding sequence (CDS)

ATGAGTCATTCTGTTTATGGAGAAGATTGCCAGGAGATTCTGAATATTGAGAATAATGATTATGTGCAAACGTTGGGACTGTTTGCAGTGGTGGAGTATTCACATGAGGAACCACCAATATCATTACGGGTATCAATAAAACTAACTTTCATTTCTGTGCTAAGGGCATATCTTTGTTCATTGGAGAATAAGGATAAAGAAAAATATATCCTTATAGTGAAGGTGGAACAATCGGATCCAACACACCCAAAATTTGAAACTGAATATGAGGCGACTGTGGTTCATAATAAAGTTAAACGCTCTTGGGATAACTTAGCCTTTCTACCTCACCCTACAGAATGA

Protein sequence

MSHSVYGEDCQEILNIENNDYVQTLGLFAVVEYSHEEPPISLRVSIKLTFISVLRAYLCSLENKDKEKYILIVKVEQSDPTHPKFETEYEATVVHNKVKRSWDNLAFLPHPTE

Homology

[Close]

BLAST of ClCG04G000430 vs. NCBI nr
Match: KAE8649343.1 (hypothetical protein Csa_014384 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 8   EDCQEILNIENNDYVQTLGLFAVVEYSHEEPPISLRVSIKLTFISVLRAYLCSLENKDKE 67
           EDC++I N+E N Y+Q +G FAV EY+H          IK  FISV  A +CS+ +  +E
Sbjct: 14  EDCKQISNVEYNSYLQAMGRFAVEEYTH------YNKGIKRKFISVGFAVVCSV-SVGEE 73

Query: 68  KYILIVKVEQ--SDPTHPKFETEYEATVVHNKVKRSWDNLAF 108
           KY L+VKV++    P+ PKFE  Y ATV+H KV  SW  L F
Sbjct: 74  KYHLLVKVDEFILAPSVPKFEKVYVATVLHKKVNHSWALLRF 108

[Close]

BLAST of ClCG04G000430 vs. NCBI nr
Match: KGN53820.1 (hypothetical protein Csa_014847 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 8   EDCQEILNIENNDYVQTLGLFAVVEYSHEEPPISLRVSIKLTFISVLRAYLCSLENKDKE 67
           EDC++I N+E N+Y+Q +G FAV E++H          I+  FISV  A +CS+     +
Sbjct: 15  EDCKQISNVEYNEYLQAMGKFAVEEHTHN------MSGIERKFISVGFAVVCSVP-VGGD 74

Query: 68  KYILIVKVEQ--SDPTHPKFETEYEATVVHNKVKRSWDNLAF 108
           KY L+VKV++    P+ PK+E  Y ATV+HNKV  SW  L F
Sbjct: 75  KYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRF 109

[Close]

BLAST of ClCG04G000430 vs. ExPASy TrEMBL
Match: A0A0A0KW14 (Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 8   EDCQEILNIENNDYVQTLGLFAVVEYSHEEPPISLRVSIKLTFISVLRAYLCSLENKDKE 67
           EDC++I N+E N+Y+Q +G FAV E++H          I+  FISV  A +CS+     +
Sbjct: 15  EDCKQISNVEYNEYLQAMGKFAVEEHTHN------MSGIERKFISVGFAVVCSVP-VGGD 74

Query: 68  KYILIVKVEQ--SDPTHPKFETEYEATVVHNKVKRSWDNLAF 108
           KY L+VKV++    P+ PK+E  Y ATV+HNKV  SW  L F
Sbjct: 75  KYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRF 109

The following BLAST results are available for this feature:

BLAST of ClCG04G000430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649343.1	1.8e-11	47.06	hypothetical protein Csa_014384 [Cucumis sativus]	[more]
KGN53820.1	2.5e-10	44.12	hypothetical protein Csa_014847 [Cucumis sativus]	[more]

BLAST of ClCG04G000430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G000430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW14	1.2e-10	44.12	Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1	[more]

BLAST of ClCG04G000430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 6..109 e-value: 1.1E-6 score: 30.7
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 13..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000430.1	ClCG04G000430.1	mRNA