ClCG04G000365 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000365
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RAB GTPase homolog A4D
Location	CG_Chr04: 1226010 .. 1226700 (-)
RNA-Seq Expression	ClCG04G000365
Synteny	ClCG04G000365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCTGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGGTTTGTGCCCTTTCTTTTTATTTTCTTTTTGTGGGGTTCATTGGTTTTTGTTTTCTTTCTCATGGAGACCACTTCATTGTTCAAGGGGTTTGGATCTGTGATAGCTTGTGAAATTGGTAAAATCCAAATGTGCTTTTGAGTTTTTGTGATAATTATTAGGTTTAATAAAATGAATGAATGTATGATAGAAGATAGAATTAGACAGCAAGGAGTTTGGAATCCTCTAATGGAATTATGACTTGTTTGTTCTTGCCTGTTCTCTGTACTTTTAAATCCACAGAGGATGCAGATACCCTATTGGTGTTTGAATGCAGTTGTTGTGATTGGAATTGTGTTGGGGTAAAAGTTTTAACTGAACTTTTTTAAATTGGCCTAGTCTACTCTCAATTGTAGTGTTTGGATTGGAAGGAATGTCAGTAGTGGTGAAAAACCAAGCCTTGGGAGGATATCATCTGAAGAAGTAA

mRNA sequence

ATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCTGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGTCTACTCTCAATTGTAGTGTTTGGATTGGAAGGAATGTCAGTAGTGGTGAAAAACCAAGCCTTGGGAGGATATCATCTGAAGAAGTAA

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCTGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGTCTACTCTCAATTGTAGTGTTTGGATTGGAAGGAATGTCAGTAGTGGTGAAAAACCAAGCCTTGGGAGGATATCATCTGAAGAAGTAA

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESLLSIVVFGLEGMSVVVKNQALGGYHLKK

Homology

[Close]

BLAST of ClCG04G000365 vs. NCBI nr
Match: TYK00128.1 (ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQESL 78
          QKTVKAQIWDTAGQES+
Sbjct: 61 QKTVKAQIWDTAGQESV 77

[Close]

BLAST of ClCG04G000365 vs. NCBI nr
Match: XP_004150166.1 (ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Csa_014745 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. NCBI nr
Match: XP_008460801.1 (PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. NCBI nr
Match: XP_038881448.1 (ras-related protein RABA4d [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. NCBI nr
Match: KAG6595661.1 (Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot
Match: Q9LH50 (Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot
Match: Q9FE79 (Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-29
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQE 76
          +KT+KAQIWDTAGQE
Sbjct: 61 RKTIKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot
Match: Q40520 (Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-29
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFS+DSKATIGVEFQT+TLVI 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61 QKTVKAQIWDTAGQE 76
           K+VKAQIWDTAGQE
Sbjct: 61 HKSVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot
Match: Q40191 (Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-29
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSK+TIGVEFQT+TLVID KTV
Sbjct: 7  YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot
Match: Q40522 (Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSKATIGVEFQT+TL I 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQ 60

Query: 61 QKTVKAQIWDTAGQE 76
           K+VKAQIWDTAGQE
Sbjct: 61 HKSVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL
Match: A0A5D3BLY9 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00110 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQESL 78
          QKTVKAQIWDTAGQES+
Sbjct: 61 QKTVKAQIWDTAGQESV 77

[Close]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL
Match: A0A5A7UD85 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00440 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL
Match: A0A0A0KW90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL
Match: A0A1S3CDP9 (ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL
Match: A0A6J1HTU8 (ras-related protein RABA4d OS=Cucurbita maxima OX=3661 GN=LOC111466102 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 147.1 bits (370), Expect = 7.7e-36
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. TAIR 10
Match: AT5G47960.1 (RAB GTPase homolog A4C )

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-30
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQE 76
          +KT+KAQIWDTAGQE
Sbjct: 61 RKTIKAQIWDTAGQE 75

[Close]

BLAST of ClCG04G000365 vs. TAIR 10
Match: AT5G65270.1 (RAB GTPase homolog A4A )

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-29
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFS+DSKATIGVEFQT+TLVID K+V
Sbjct: 7  YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]

BLAST of ClCG04G000365 vs. TAIR 10
Match: AT4G39990.1 (RAB GTPase homolog A4B )

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-27
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7  YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]

BLAST of ClCG04G000365 vs. TAIR 10
Match: AT1G01200.1 (RAB GTPase homolog A3 )

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 10 QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIW 69
          +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIW
Sbjct: 23 EKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKSTIGVEFQTRTITLRGKLVKAQIW 82

Query: 70 DTAGQE 76
          DTAGQE
Sbjct: 83 DTAGQE 88

The following BLAST results are available for this feature:

BLAST of ClCG04G000365 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00128.1	2.6e-33	98.70	ras-related protein RABA4d [Cucumis melo var. makuwa]	[more]
XP_004150166.1	9.8e-33	100.00	ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Cs...	[more]
XP_008460801.1	9.8e-33	100.00	PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related p...	[more]
XP_038881448.1	9.8e-33	100.00	ras-related protein RABA4d [Benincasa hispida]	[more]
KAG6595661.1	2.2e-32	98.67	Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of ClCG04G000365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LH50	1.1e-34	97.33	Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1	[more]
Q9FE79	4.0e-29	82.67	Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1	[more]
Q40520	4.0e-29	84.00	Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1	[more]
Q40191	6.8e-29	87.32	Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1	[more]
Q40522	3.4e-28	81.33	Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1	[more]

BLAST of ClCG04G000365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLY9	1.2e-33	98.70	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UD85	4.7e-33	100.00	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A0A0KW90	4.7e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1	[more]
A0A1S3CDP9	4.7e-33	100.00	ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1	[more]
A0A6J1HTU8	1.1e-32	98.67	ras-related protein RABA4d OS=Cucurbita maxima OX=3661 GN=LOC111466102 PE=4 SV=1	[more]

BLAST of ClCG04G000365 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12160.1	7.7e-36	97.33	RAB GTPase homolog A4D	[more]
AT5G47960.1	2.8e-30	82.67	RAB GTPase homolog A4C	[more]
AT5G65270.1	5.3e-29	84.51	RAB GTPase homolog A4A	[more]
AT4G39990.1	2.9e-27	80.28	RAB GTPase homolog A4B	[more]
AT1G01200.1	1.5e-23	77.27	RAB GTPase homolog A3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 39..55 score: 34.43 coord: 16..37 score: 50.9 coord: 57..79 score: 47.36
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..104 e-value: 9.8E-10 score: 11.9
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..79
None	No IPR available	PANTHER	PTHR47978:SF27	BNAA05G26830D PROTEIN	coord: 1..79
None	No IPR available	PROSITE	PS51419	RAB	coord: 11..104 score: 14.21654
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..81 e-value: 2.0E-16 score: 58.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..92 e-value: 3.9E-26 score: 93.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..92
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 17..80 e-value: 8.6E-23 score: 80.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000365.1	ClCG04G000365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0080092	regulation of pollen tube growth
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0005768	endosome
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0090404	pollen tube tip
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019900	kinase binding
molecular_function	GO:0046983	protein dimerization activity