ClCG04G000312 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G000312
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description30S ribosomal protein S2, chloroplastic
LocationCG_Chr04: 1098120 .. 1098502 (-)
RNA-Seq ExpressionClCG04G000312
SyntenyClCG04G000312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACACAAAAGCGCCGCTTTCTCTGTAGTGTTGTCACACAGCAGCCCGCCTAGAAGAGCCATGGCTTGGATCGTGTATCAACAGTCAATCCCCAGTCGAGGTAGAGGATAAGGTTCCATGGGAACAATTATTTATTTCTATTTCGGCTCATCTCTTTTTTTTAAGAAAAAAGCGAGGAAGTGAGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCGTGCTATCCTCCAGTCTTCTTAATCTTTGTTCTCGGACCGAATGTGATAGAATTTGCCGCTATTGAATCAGCAACTTTTGAATCAAAGCAATAG

mRNA sequence

ATGTTACACAAAAGCGCCGCTTTCTCTGTAGTGTTGTCACACAGCAGCCCGCCTAGAAGAGCCATGGCTTGGATCGTGTATCAACAGTCAATCCCCAGTCGAGAAAAAAGCGAGGAAGTGAGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCGTGCTATCCTCCAGTCTTCTTAATCTTTGTTCTCGGACCGAATGTGATAGAATTTGCCGCTATTGAATCAGCAACTTTTGAATCAAAGCAATAG

Coding sequence (CDS)

ATGTTACACAAAAGCGCCGCTTTCTCTGTAGTGTTGTCACACAGCAGCCCGCCTAGAAGAGCCATGGCTTGGATCGTGTATCAACAGTCAATCCCCAGTCGAGAAAAAAGCGAGGAAGTGAGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCGTGCTATCCTCCAGTCTTCTTAATCTTTGTTCTCGGACCGAATGTGATAGAATTTGCCGCTATTGAATCAGCAACTTTTGAATCAAAGCAATAG

Protein sequence

MLHKSAAFSVVLSHSSPPRRAMAWIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACYPPVFLIFVLGPNVIEFAAIESATFESKQ
Homology
[Close]
BLAST of ClCG04G000312 vs. NCBI nr
Match: QRN71379.1 (ribosomal protein S2 [Semiaquilegia guangxiensis])

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 46/73 (63.01%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 19 RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFG 78
          +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFG
Sbjct: 4  KELMAWTVYHHSISGRKVPSEQFFISGYLVLKKEEVGGEMTRRYWNIHLEEMMEAGVHFG 63

[Close]
BLAST of ClCG04G000312 vs. NCBI nr
Match: YP_009744483.1 (ribosomal protein S2 [Aquilegia rockii] >QIE13436.1 ribosomal protein S2 [Aquilegia rockii])

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 46/73 (63.01%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 19 RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFG 78
          +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFG
Sbjct: 4  KELMAWTVYHHSISGRKVPSEQFFISGYLVLKKEEVGGEMTRRYWNIHLEEMMEAGVHFG 63

[Close]
BLAST of ClCG04G000312 vs. NCBI nr
Match: WP_222196268.1 (30S ribosomal protein S2, partial [Modestobacter italicus])

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-15
Identity = 47/78 (60.26%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 22 MAWIVYQQSIPSR----------------------EKSEEVRGEMTRRYWNIHLEEMMEA 78
          MAWIVYQ+ I  R                      +K EEV GEMTRRYWNI+LEEMMEA
Sbjct: 1  MAWIVYQRPISGRREGSIGTIIYFRVPRLFFHKKIKKKEEVWGEMTRRYWNINLEEMMEA 60

[Close]
BLAST of ClCG04G000312 vs. NCBI nr
Match: QJF46372.1 (ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-15
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 24 WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          +  +  S+  R+KSEEV GEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 6  YFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPY 59

[Close]
BLAST of ClCG04G000312 vs. NCBI nr
Match: QIB72005.1 (30S ribosomal protein S2 [Magnolia delavayi])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 48/89 (53.93%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 7   AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRY 66
           AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRY
Sbjct: 33  AFYLVIKIIMNRNELMTWTVYQRSISGRRFRRNNYLFQGTSSLFKKKKREKVGGEMTRRY 92

Query: 67  WNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
           WNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 93  WNINLEEMMEAGVHFGHGTRKWNPRMAPY 121

[Close]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 1  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPY 34

[Close]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match: Q0G9N0 (30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps2 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 1  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPY 34

[Close]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match: Q09MI9 (30S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          M RRYWNIHLEEMMEAG+HFGHGTRKWNPRMA Y
Sbjct: 1  MARRYWNIHLEEMMEAGIHFGHGTRKWNPRMAPY 34

[Close]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match: A6MM25 (30S ribosomal protein S2, chloroplastic OS=Buxus microphylla OX=153571 GN=rps2 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 1  MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPY 34

[Close]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match: A8SE74 (30S ribosomal protein S2, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rps2 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 1  MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPY 34

[Close]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match: A0A6G6DA64 (30S ribosomal protein S2, chloroplastic OS=Aquilegia rockii OX=1291456 GN=rps2 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 46/73 (63.01%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 19 RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFG 78
          +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFG
Sbjct: 4  KELMAWTVYHHSISGRKVPSEQFFISGYLVLKKEEVGGEMTRRYWNIHLEEMMEAGVHFG 63

[Close]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match: A0A6M3W1W6 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 24 WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          +  +  S+  R+KSEEV GEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 6  YFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPY 59

[Close]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match: A0A7M3UYB2 (30S ribosomal protein S2, chloroplastic OS=Magnolia delavayi OX=85855 GN=rps2 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 48/89 (53.93%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 7   AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRY 66
           AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRY
Sbjct: 33  AFYLVIKIIMNRNELMTWTVYQRSISGRRFRRNNYLFQGTSSLLKKKKREKVGGEMTRRY 92

Query: 67  WNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
           WNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 93  WNINLEEMMEAGVHFGHGTRKWNPRMAPY 121

[Close]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match: A0A6C0UCN5 (30S ribosomal protein S2, chloroplastic OS=Magnolia delavayi OX=85855 GN=rps2 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 48/89 (53.93%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 7   AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRY 66
           AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRY
Sbjct: 33  AFYLVIKIIMNRNELMTWTVYQRSISGRRFRRNNYLFQGTSSLFKKKKREKVGGEMTRRY 92

Query: 67  WNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
           WNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 93  WNINLEEMMEAGVHFGHGTRKWNPRMAPY 121

[Close]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match: A0A411FR86 (30S ribosomal protein S2, chloroplastic OS=Barbeya oleoides OX=48391 GN=rps2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 35 EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          EK EEV GEMTRRYWNIH EEMMEAGVHFGHGTRKWNPRMA Y
Sbjct: 44 EKREEVWGEMTRRYWNIHFEEMMEAGVHFGHGTRKWNPRMASY 86

[Close]
BLAST of ClCG04G000312 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 44 MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY 78
          MT+RYWNI LEEMM AGVHFGHGTRKWNPRMA Y
Sbjct: 1  MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPY 34

The following BLAST results are available for this feature:
BLAST of ClCG04G000312 vs. NCBI nr
Match NameE-valueIdentityDescription
QRN71379.12.9e-1663.01ribosomal protein S2 [Semiaquilegia guangxiensis][more]
YP_009744483.12.9e-1663.01ribosomal protein S2 [Aquilegia rockii] >QIE13436.1 ribosomal protein S2 [Aquile... [more]
WP_222196268.12.4e-1560.2630S ribosomal protein S2, partial [Modestobacter italicus][more]
QJF46372.13.2e-1575.93ribosomal protein S2 [Cucumis melo][more]
QIB72005.14.2e-1553.9330S ribosomal protein S2 [Magnolia delavayi][more]
BLAST of ClCG04G000312 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP42.8e-1497.0630S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ... [more]
Q0G9N02.8e-1497.0630S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp... [more]
Q09MI91.4e-1391.1830S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 ... [more]
A6MM251.8e-1394.1230S ribosomal protein S2, chloroplastic OS=Buxus microphylla OX=153571 GN=rps2 P... [more]
A8SE741.8e-1394.1230S ribosomal protein S2, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rps... [more]
BLAST of ClCG04G000312 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6G6DA641.4e-1663.0130S ribosomal protein S2, chloroplastic OS=Aquilegia rockii OX=1291456 GN=rps2 P... [more]
A0A6M3W1W61.5e-1575.9330S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=... [more]
A0A7M3UYB22.0e-1553.9330S ribosomal protein S2, chloroplastic OS=Magnolia delavayi OX=85855 GN=rps2 PE... [more]
A0A6C0UCN52.0e-1553.9330S ribosomal protein S2, chloroplastic OS=Magnolia delavayi OX=85855 GN=rps2 PE... [more]
A0A411FR867.7e-1590.7030S ribosomal protein S2, chloroplastic OS=Barbeya oleoides OX=48391 GN=rps2 PE=... [more]
BLAST of ClCG04G000312 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00160.11.9e-1388.24ribosomal protein S2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10490coord: 47..78
e-value: 5.0E-8
score: 34.4
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 53..64
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 53..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000312.1ClCG04G000312.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006412 translation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0003735 structural constituent of ribosome